cluster # 12319

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Oryza sativa
cluster # 12319 cluster # 12319 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12319#0 length = 2166 sequences # 7

consensus_12319#1 length = 1097 sequences # 2
consensus_12319#2 length = 111 sequences # 1

consensusID : consensus_12319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2166
fasta sequence

                              [CTCGACGAAGCGAGGAAGGGATAGAATCCCCCCAAATCCCCCAACGCGAGCTCCAAACCCTAGCGCCGCAAAGGCGGGCGACGGTTTCCCTCT-CCTCGATCCGCCGCGCGGGGCTCCGGTGTTGAAGCCCGCACCCTCCCCGCGGCGGCGGTTGCGGCGCGGGCGAGAGGGAGGGGGAGAGAGGGGCGCCTCTCCTCTCTCGGCGGGAGGGTTTCTCGATCTGGAAGGCTCACACCTGGCGGCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGAGGGGGCGGCTCCGGCGATGGCGATCCTGGCGTGGTAGCGCCCGCCCCCACAATTCGGAGGCCTTCCCCCGGTTGGTGTGGTGGAGGGAGGGAGAGGGCGGGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGCTTCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAGGGCGGCGGAGACACGAAAGTGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTAAAGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTGTTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAAAAAAAATAGAAAGAAAAACAAAAAAAATAAAAAGATAAATTCAGAAGAAAAAAAAAAAAAACTGAGTGGGCATTATGGCTGTATATTACAAGTTCAAGAGTGCCAGAGATTATGACTCGATTCCGATCGAGGGGCAATTCATCTCGGTTGCCAACCTGAAGGAGCGGATTTTTGAGTCCAAGCATCTTGGGAGAGGCACAGATTTTGACCTCATGATTTCAAATGCGCAGACCGACGAAGAATATGCTGATGAAGCTACTATGATACCAAAGAACACATCGGTGTTGATTCGTCGGATACCAGGAAGACCAAGGAAGCCTATTGTAACAGAACCAGAAGAGACAAAAGCCATGGAAGGTAGGGTAGAAGAAACCATGCCTTCTGGTAGTGCTTTTCTTGCTGATGCATCTATGAAATATCCTGAAGAATCTGAGTGGGATGACGAGTTTGGCAATGATTTATATGTTTCTGATTCAGTCCCTTCACAGCTCGGTAGCCAGGCGGTTGATGCATCTGAAAATAAAGTTGATGAAGATAGTAAAATAAAAGCACTTATTGATACATCTGCACTCGACTATAGTCAAATTCCTGATGGGTATGGTGGTGGAAGAGGCTATGGAAGAGGGATGGGTGGAAGAATGATGGGTGGTCGTGGTTTTGGACGTGGTGGTCTGGAACGTAGGACACCTCCTGCAGGCTATGCCTGTCATAGATGTAAAGTGCCTGGTCATTTCATTCAACATTGCCCAACAAATGGTGATGCTAGATTTGACATGAAAAGGATGAAACCTCCAACTGGCATTCCAAAATCTATGTTGATGGCAACCCCAGATGGCTCATATGCACTACCAAGTGGGGCTGGTGCTGTCTTGAAGCCAAATGAAGCTGCTTTTGAGAAGGAGATAGAGGGATTACCCACAACCCGCTCACTTGGTGATCTTCCACCAGAGTTACGTTGCCCATTGTGTAAAGAAGTAATGAAGGATGCTGTTCTAACTAGTAAATGCTGCTTTAGGAGTTTCTGTGATAAATGCATTAGGGACTACATTATAAACAAGTCAATGTGTGTCTGTGGTGCCACAAGCATATTAGCAGACGATCTTCTCCCCAATAAAACTCTAAGAGAAACCATCAGCCGGATATTAGAGGCACCACCAACTAGCAGTACAGAAAATGTGGGAAGCATGGTGCAAGTACAGGATATGGAGTCAGCTATTCCTGTACAGCCCAAGGTTAGGTCTCCAGCTGTTTCTGCTGCTTCAAAGGAAGAACCAAAAAGAACACCTGCACCTGTAGAAGAGTCTCCAGATGTTGAGAGCCATAGCGAAGTGAAAACTACAAATGTTGATATGAGTTCTTCAGATAAGAAGGTCCCCGCATTACCAGATGTTGTTGAAGGAACCATGGAGTCTAAAATTCTGAAAGAAAAAACACCAGAAGCAACACCTGTTGTGAAAGAGTCACAGGAAAAAATGCCTGTTGTGGGCGAACAAGTCGTAAAAGCGG]

[+] EMBL AK105212             [CTCGACGAAGCGAGGAAGGGATAGAATCCCCCCAAATCCCCCAACGCGAGCTCCAAACCCTAGCGCCGCAAAGGCGGGCGACGGTTTCCCTCT CCTCGATCCGCCGCGCGGGGCTCCGGTGTTGAAGCCCGCACCCTCCCCGCGGCGGCGGTTGCGGCGCGGGCGAGAGGGAGGGGGAGAGAGGGGCGCCTCTCCTCTCTCGGCGGGAGGGTTTCTCGATCTGGAAGGCTCACACCTGGCGGCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGAGGGGGCGGCTCCGGCGATGGCGATCCTGGCGTGGTAGCGCCCGCCCCCACAATTCGGAGGCCTTCCCCCGGTTGGTGTGGTGGAGGGAGGGAGAGGGCGGGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGCTTCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAGGGCGGCGGAGACACGAAAGTGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTAAAGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTGTTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAAAAAAAATAGAAAGAAAAACAAAAAAAATAAAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI796053             [           GAGGAAGGGATAGAATCCCCCCAAGTCCCCC ACGCGAGCTCCAAACCCTAGCGCCGCAAAGGC GGCGACGGTTTCCCTCTGCCTCGATCCGCCGCGCGGGGCTCCGGTTTTGAAGCCCGCACCCTCCCC CGTC GC GTTTCGGC CGGGCGAGAGGGAGGGGGAGAGAGGGGCGCCTCTCCTCTCTC GCGGGAGGGTTTCTCGATCTGGAAGGCTCACACCTGGCGGCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGA GGGGCGGCTCCGGCGATGGCGATCCTGGC TGGTAGCGCCCGCCCCCACAATTCGGAGGACTTCCCCCGGTTGGTGTGGTGGAGGGAGGGAGA GGCGGGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGCTTCTTTGGC GCTGCGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB653520             [                ggcacgAGGATCCCCCCAAATCCCCCAACGCGAGCTCCAAACCCTAGCGCCGCAAAGGCGGGCGACGGTTTCCCTCT CCTCGATCCGCCGCGCGGGGCTCCGGTGTTGAAGCCCGCACCCTCCCCGCGGCGGCGGTTGCGGCGCGGGCGAGAGGGAGGGGGAGAGAGGGGCGCCTCTCCTCTCTCGGCGGGAGGGTTTCTCGATCTGGAAGGCTCACACCTGGCGGCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGAGGGGGCGGCTCCGGCGATGGCGATCCTGGCGTGGTAGCGCCCGCCCCCACAATTCGGAGGCCTTCCCCCGGTTGGTGTGGTGGAGGGAGGGAGAGGGCGGGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGCTTCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAGGGCGGCGGAGACACGAAAGTGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTAAAGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTGTTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAAAAAAAATAGAAAGAAAAACAAAAAAAATAAAAAGATAAATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C74359               [                             CCCCAAATCCCCCAACGCGAGCNCCAAACCCTAGCGCCGCAAAGGGGTGCGACGGTTTCCCTCT CCTCGATCCGCCGCGCGGTGCTCCGGTGTTGAAGCCCGCACCCTCCCCGCGGCGGCGGTTGCNGCGCGGGCNAGAGGGAGGGGGAGAGAGGGGCGCCTCTACTCTCTCGGCGGGAGGGTTTCTCGATCTGGAAGGCTCANACCTGGCGGCTCCTCGGTGCNCCGCGCCCGGATCTGCAGCn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU078375             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTAAAGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTGTTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAAAAAAAATAGAAAGAAAAAC AAAAAAATAAAAAGATAAATTCAGAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK106568             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTGTTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAAAAAAAATAGAAAGAAAAACAAAAAAAATAAAAAGATAAATTCAGAAGAAAAGAAAAAAAAACTGAGTGGGCATTATGGCTGTATATTACAAGTTCAAGAGTGCCAGAGATTATGACTCGATTCCGATCGAGGGGCAATTCATCTCGGTTGCCAACCTGAAGGAGCGGATTTTTGAGTCCAAGCATCTTGGGAGAGGCACAGATTTTGACCTCATGATTTCAAATGCGCAGACCGACGAAGAATATGCTGATGAAGCTACTATGATACCAAAGAACACATCGGTGTTGATTCGTCGGATACCAGGAAGACCAAGGAAGCCTATTGTAACAGAACCAGAAGAGACAAAAGCCATGGAAGGTAGGGTAGAAGAAACCATGCCTTCTGGTAGTGCTTTTCTTGCTGATGCATCTATGAAATATCCTGAAGAATCTGAGTGGGATGACGAGTTTGGCAATGATTTATATGTTTCTGATTCAGTCCCTTCACAGCTCGGTAGCCAGGCGGTTGATGCATCTGAAAATAAAGTTGATGAAGATAGTAAAATAAAAGCACTTATTGATACATCTGCACTCGACTATAGTCAAATTCCTGATGGGTATGGTGGTGGAAGAGGCTATGGAAGAGGGATGGGTGGAAGAATGATGGGTGGTCGTGGTTTTGGACGTGGTGGTCTGGAACGTAGGACACCTCCTGCAGGCTATGCCTGTCATAGATGTAAAGTGCCTGGTCATTTCATTCAACATTGCCCAACAAATGGTGATGCTAGATTTGACATGAAAAGGATGAAACCTCCAACTGGCATTCCAAAATCTATGTTGATGGCAACCCCAGATGGCTCATATGCACTACCAAGTGGGGCTGGTGCTGTCTTGAAGCCAAATGAAGCTGCTTTTGAGAAGGAGATAGAGGGATTACCCACAACCCGCTCACTTGGTGATCTTCCACCAGAGTTACGTTGCCCATTGTGTAAAGAAGTAATGAAGGATGCTGTTCTAACTAGTAAATGCTGCTTTAGGAGTTTCTGTGATAAATGCATTAGGGACTACATTATAAACAAGTCAATGTGTGTCTGTGGTGCCACAAGCATATTAGCAGACGATCTTCTCCCCAATAAAACTCTAAGAGAAACCATCAGCCGGATATTAGAGGCACCACCAACTAGCAGTACAGAAAATGTGGGAAGCATGGTGCAAGTACAGGATATGGAGTCAGCTATTCCTGTACAGCCCAAGGTTAGGTCTCCAGCTGTTTCTGCTGCTTCAAAGGAAGAACCAAAAAGAACACCTGCACCTGTAGAAGAGTCTCCAGATGTTGAGAGCCATAGCGAAGTGAAAACTACAAATGTTGATATGAGTTCTTCAGATAAGAAGGTCCCCGCATTACCAGATGTTGTTGAAGGAACCATGGAGTCTAAAATTCTGAAAGAAAAAACACCAGAAGCAACACCTGTTGTGAAAGAGTCACAGGAAAAAATGCCTGTTGTGGGCG                  ]
[+] EMBL AU225724             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gccgctGCATGGTGCAAGTACAGGATATGGAGTCAGCTATTCCTGTACAGCCCAAGGTTAGGTCTCCAGCTGTTTCTGCTGCTTCAAAGGAAGAACCAAAAAGAACACCTGCACCTGTAGAAGAGTCTCCAGATGTTGAGAGCCATAGCGAAGTGAAAACTACAAATGTTGATATGAGTTCTTCAGATAAGAAGGTCCCCGCATTACCAGATGTTGTTGAAGGAACCATGGAGTCTAAAATTCTGAAAGAAAAAACACCAGAAGCAACACCTGTTGTGAAAGAGTCACAGGAAAAAATGCCTGTTGTGGGCGAACAAGTCGTAAAAGCGG]




>consensus_12319#0
CTCGACGAAGCGAGGAAGGGATAGAATCCCCCCAAATCCCCCAACGCGAGCTCCAAACCC
TAGCGCCGCAAAGGCGGGCGACGGTTTCCCTCTCCTCGATCCGCCGCGCGGGGCTCCGGT
GTTGAAGCCCGCACCCTCCCCGCGGCGGCGGTTGCGGCGCGGGCGAGAGGGAGGGGGAGA
GAGGGGCGCCTCTCCTCTCTCGGCGGGAGGGTTTCTCGATCTGGAAGGCTCACACCTGGC
GGCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGAGGGGGCGGCTCCGGCGAT
GGCGATCCTGGCGTGGTAGCGCCCGCCCCCACAATTCGGAGGCCTTCCCCCGGTTGGTGT
GGTGGAGGGAGGGAGAGGGCGGGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGC
TTCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAGGGCGGCGGAGACACGAAAG
TGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTA
AAGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTG
TTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAA
AAAAAATAGAAAGAAAAACAAAAAAAATAAAAAGATAAATTCAGAAGAAAAAAAAAAAAA
ACTGAGTGGGCATTATGGCTGTATATTACAAGTTCAAGAGTGCCAGAGATTATGACTCGA
TTCCGATCGAGGGGCAATTCATCTCGGTTGCCAACCTGAAGGAGCGGATTTTTGAGTCCA
AGCATCTTGGGAGAGGCACAGATTTTGACCTCATGATTTCAAATGCGCAGACCGACGAAG
AATATGCTGATGAAGCTACTATGATACCAAAGAACACATCGGTGTTGATTCGTCGGATAC
CAGGAAGACCAAGGAAGCCTATTGTAACAGAACCAGAAGAGACAAAAGCCATGGAAGGTA
GGGTAGAAGAAACCATGCCTTCTGGTAGTGCTTTTCTTGCTGATGCATCTATGAAATATC
CTGAAGAATCTGAGTGGGATGACGAGTTTGGCAATGATTTATATGTTTCTGATTCAGTCC
CTTCACAGCTCGGTAGCCAGGCGGTTGATGCATCTGAAAATAAAGTTGATGAAGATAGTA
AAATAAAAGCACTTATTGATACATCTGCACTCGACTATAGTCAAATTCCTGATGGGTATG
GTGGTGGAAGAGGCTATGGAAGAGGGATGGGTGGAAGAATGATGGGTGGTCGTGGTTTTG
GACGTGGTGGTCTGGAACGTAGGACACCTCCTGCAGGCTATGCCTGTCATAGATGTAAAG
TGCCTGGTCATTTCATTCAACATTGCCCAACAAATGGTGATGCTAGATTTGACATGAAAA
GGATGAAACCTCCAACTGGCATTCCAAAATCTATGTTGATGGCAACCCCAGATGGCTCAT
ATGCACTACCAAGTGGGGCTGGTGCTGTCTTGAAGCCAAATGAAGCTGCTTTTGAGAAGG
AGATAGAGGGATTACCCACAACCCGCTCACTTGGTGATCTTCCACCAGAGTTACGTTGCC
CATTGTGTAAAGAAGTAATGAAGGATGCTGTTCTAACTAGTAAATGCTGCTTTAGGAGTT
TCTGTGATAAATGCATTAGGGACTACATTATAAACAAGTCAATGTGTGTCTGTGGTGCCA
CAAGCATATTAGCAGACGATCTTCTCCCCAATAAAACTCTAAGAGAAACCATCAGCCGGA
TATTAGAGGCACCACCAACTAGCAGTACAGAAAATGTGGGAAGCATGGTGCAAGTACAGG
ATATGGAGTCAGCTATTCCTGTACAGCCCAAGGTTAGGTCTCCAGCTGTTTCTGCTGCTT
CAAAGGAAGAACCAAAAAGAACACCTGCACCTGTAGAAGAGTCTCCAGATGTTGAGAGCC
ATAGCGAAGTGAAAACTACAAATGTTGATATGAGTTCTTCAGATAAGAAGGTCCCCGCAT
TACCAGATGTTGTTGAAGGAACCATGGAGTCTAAAATTCTGAAAGAAAAAACACCAGAAG
CAACACCTGTTGTGAAAGAGTCACAGGAAAAAATGCCTGTTGTGGGCGAACAAGTCGTAA
AAGCGG

consensusID : consensus_12319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1097
fasta sequence

                              [CAATCCCAATCCCTTTCCCCACTCCCCCCCTCCCTCTCGAGTCTCGACGAAGCGAGGAAGGGATAGAATCCCCCCAAATCCCCCAACGCGAGCTCCAAACCCTAGCGCCGCAAAGGCGGGCGACGGTTTCCCTCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGAGGGGGCGGCTCCGGCGATGGCGATCCTGGCGTGGTAGCGCCCGCCCCCACAATTCGGAGGCCTTCCCCCGGTTGGTGTGGTGGAGGGAGGGAGAGGGCGGGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGCTTCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAGGGCGGCGGAGACACGAAAGTGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTAAAGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTGTTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAAAAAAAATAGAAAGAAAAACAAAAAAAATAAAAAGATAAATTCAGAAGAAAAGAAAAAAAAACTGAGTGGGCATTATGGCTGTATATTACAAGTTCAAGAGTGCCAGAGATTATGACTCGATTCCGATCGAGGGGCAATTCATCTCGGTTGCCAACCTGAAGGAGCGGATTTTTGAGTCCAAGCATCTTGGGAGAGGCACAGATTTTGACCTCATGATTTCAAATGCGCAGACCGACGAAGGTTGGTTCTTCTTAGCGTCGGGCCCTTTGTGTGATTTCTTGTATGAGTGAATGTAAGCAAGTTGATAAGGCCAGATAGTATTGCGAATTTGTGATAGACCTAGGTTTTATTGTTGTTTCATTTGTATGGTAAATCTGTGACTTTCTGATTTGTGCAGTCAAGAGTTCTGCATTGATTCAGTTGTATAACACGAAAATTGATGCTCTATCTAGTATCAATAGCTATTATCATTTTTTTTTACCATAGACGCTTTGAATTTTTTGCTGTCATAAGCCTGCTAGGAAATGATTTACAGGATTGTTGTGG]

[+] EMBL AK099410             [CAATCCCAATCCCTTTCCCCACTCCCCCCCTCCCTCTCGAGTCTCGACGAAGCGAGGAAGGGATAGAATCCCCCCAAATCCCCCAACGCGAGCTCCAAACCCTAGCGCCGCAAAGGCGGGCGACGGTTTCCCTCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGAGGGGGCGGCTCCGGCGATGGCGATCCTGGCGTGGTAGCGCCCGCCCCCACAATTCGGAGGCCTTCCCCCGGTTGGTGTGGTGGAGGGAGGGAGAGGGCGGGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGCTTCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAGGGCGGCGGAGACACGAAAGTGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTAAAGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTGTTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAAAAAAAATAGAAAGAAAAACAAAAAAAATAAAAAGATAAATTCAGAAGAAAAGAAAAAAAAACTGAGTGGGCATTATGGCTGTATATTACAAGTTCAAGAGTGCCAGAGATTATGACTCGATTCCGATCGAGGGGCAATTCATCTCGGTTGCCAACCTGAAGGAGCGGATTTTTGAGTCCAAGCATCTTGGGAGAGGCACAGATTTTGACCTCATGATTTCAAATGCGCAGACCGACGAAGGTTGGTTCTTCTTAGCGTCGGGCCCTTTGTGTGATTTCTTGTATGAGTGAATGTAAGCAAGTTGATAAGGCCAGATAGTATTGCGAATTTGTGATAGACCTAGGTTTTATTGTTGTTTCATTTGTATGGTAAATCTGTGACTTTCTGATTTGTGCAGTCAAGAGTTCTGCATTGATTCAGTTGTATAACACGAAAATTGATGCTCTATCTAGTATCAATAGCTATTATCATTT                                                                         ]
[+] EMBL CA763806             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCGGTTGCCAACCTGAAGGAGCGGATTTTTGAGTCCAAGCATCTTGGGAGAGGCACAGATTTTGACCTCATGATTTCAAATGCGCAGACCGACGAAGGTTGGTTCTTCTTAGCGTCGGGCCCTTTGTGTGATTTCTTGTATGAGTGAATGTAAGCAAGTTGATAAGGCCAGATAGTATTGCGAATTTGTGATAGACCTAGGTTTTATTGTTGTTTCATTTGTATGGTAAATCTGTGACTTTCTGATTTGTGCAGTCAAGAGTTCTGCATTGATTCAGTTGTATAACACGAAAATTGATGCTCTATCTAGTATCAATAGCTATTATCATTTTTTTTTACCATAGACGCTTTGAATTTTTTGCTGTCATAAGCCTGCTAGGAAATGATTTACAGGATTGTTGTGG]




>consensus_12319#1
CAATCCCAATCCCTTTCCCCACTCCCCCCCTCCCTCTCGAGTCTCGACGAAGCGAGGAAG
GGATAGAATCCCCCCAAATCCCCCAACGCGAGCTCCAAACCCTAGCGCCGCAAAGGCGGG
CGACGGTTTCCCTCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGAGGGGGCG
GCTCCGGCGATGGCGATCCTGGCGTGGTAGCGCCCGCCCCCACAATTCGGAGGCCTTCCC
CCGGTTGGTGTGGTGGAGGGAGGGAGAGGGCGGGTTTCTCTTCGTGCGGGCTCTTTACCT
CCGGTGGTGGCTTCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAGGGCGGCGG
AGACACGAAAGTGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTT
GTTCCGGTTTAAAGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTT
ATTTACTGCTGTTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGA
AAAGCCAACAAAAAAAATAGAAAGAAAAACAAAAAAAATAAAAAGATAAATTCAGAAGAA
AAGAAAAAAAAACTGAGTGGGCATTATGGCTGTATATTACAAGTTCAAGAGTGCCAGAGA
TTATGACTCGATTCCGATCGAGGGGCAATTCATCTCGGTTGCCAACCTGAAGGAGCGGAT
TTTTGAGTCCAAGCATCTTGGGAGAGGCACAGATTTTGACCTCATGATTTCAAATGCGCA
GACCGACGAAGGTTGGTTCTTCTTAGCGTCGGGCCCTTTGTGTGATTTCTTGTATGAGTG
AATGTAAGCAAGTTGATAAGGCCAGATAGTATTGCGAATTTGTGATAGACCTAGGTTTTA
TTGTTGTTTCATTTGTATGGTAAATCTGTGACTTTCTGATTTGTGCAGTCAAGAGTTCTG
CATTGATTCAGTTGTATAACACGAAAATTGATGCTCTATCTAGTATCAATAGCTATTATC
ATTTTTTTTTACCATAGACGCTTTGAATTTTTTGCTGTCATAAGCCTGCTAGGAAATGAT
TTACAGGATTGTTGTGG

consensusID : consensus_12319#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 111
fasta sequence

                              [GCCAGATAGTATTGCGAATTTGTGATAGACCTAGGTTTTATTGTTGTTTCATTTGTATGGTAAATCTGTGACTTTCTGATTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU057936             [GCCAGATAGTATTGCGAATTTGTGATAGACCTAGGTTTTATTGTTGTTTCATTTGTATGGTAAATCTGTGACTTTCTGATTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12319#2
GCCAGATAGTATTGCGAATTTGTGATAGACCTAGGTTTTATTGTTGTTTCATTTGTATGG
TAAATCTGTGACTTTCTGATTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      CTCGACGAAGCGAGGAAGGGATAGAATCCCCCCAAATCCCCCAACGCGAGCTCCAAACCC 60
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      TAGCGCCGCAAAGGCGGGCGACGGTTTCCCTCTCCTCGATCCGCCGCGCGGGGCTCCGGT 120
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GTTGAAGCCCGCACCCTCCCCGCGGCGGCGGTTGCGGCGCGGGCGAGAGGGAGGGGGAGA 180
                                                                                   

consensus_12319#1      ------------------------------------------------CAATCCCAATCC 12
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GAGGGGCGCCTCTCCTCTCTCGGCGGGAGGGTTTCTCGATCTGGAAGGCTCACACCTGGC 240
                                                                                   

consensus_12319#1      CTTTCCCCACTCCCCCCCTCCCTCTCGAGTCTCGACGAAGCGAGGAAGGGATAGAATCCC 72
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GGCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGAGGGGGCGGCTCCGGCGAT 300
                                                                                   

consensus_12319#1      CCCAAATCCCCCAACGCGAGCTCCAAACCCTAGCGCCGCAAAGGCGGGCGACGGTTTCCC 132
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GGCGATCCTGGCGTGGTAGCGCCCGCCCCCACAATTCGGAGGCCTTCCCCCGGTTGGTGT 360
                                                                                   

consensus_12319#1      TCTCCTCGGTGCCCCGCGCCCGGATCTGCAGCGATCTGGGAGGGGGCGGCTCCGGCGATG 192
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GGTGGAGGGAGGGAGAGGGCGGGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGC 420
                                                                                   

consensus_12319#1      GCGATCCTGGCGTGGTAGCGCCCGCCCCCACAATTCGGAGGCCTTCCCCCGGTTGGTGTG 252
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      TTCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAGGGCGGCGGAGACACGAAAG 480
                                                                                   

consensus_12319#1      GTGGAGGGAGGGAGAGGGCGGGTTTCTCTTCGTGCGGGCTCTTTACCTCCGGTGGTGGCT 312
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      TGCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTA 540
                                                                                   

consensus_12319#1      TCTTTGGCGGCTGCGTTTTAGGAGAGCGGCCGCCCGGCAGGGCGGCGGAGACACGAAAGT 372
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      AAGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTG 600
                                                                                   

consensus_12319#1      GCTGCTTGCTTGTACACTTGTTCATGTGTCTATCTGTTTTCTCGATTTGTTCCGGTTTAA 432
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      TTCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAA 660
                                                                                   

consensus_12319#1      AGCATCAGTTTTCCGCTCAATTTAAGGGCGAAGGCAAAATTTTTTGTTATTTACTGCTGT 492
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      AAAAAATAGAAAGAAAAACAAAAAAAATAAAAAGATAAATTCAGAAGAAAAAAAAAAAAA 720
                                                                                   

consensus_12319#1      TCTCTATCGAATAATCTGCTCTATTACAGAAGAAGAGGGGGGGGGGGAAAAGCCAACAAA 552
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      ACTGAGTGGGCATTATGGCTGTATATTACAAGTTCAAGAGTGCCAGAGATTATGACTCGA 780
                                                                                   

consensus_12319#1      AAAAATAGAAAGAAAAACAAAAAAAATAAAAAGATAAATTCAGAAGAAAAGAAAAAAAAA 612
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      TTCCGATCGAGGGGCAATTCATCTCGGTTGCCAACCTGAAGGAGCGGATTTTTGAGTCCA 840
                                                                                   

consensus_12319#1      CTGAGTGGGCATTATGGCTGTATATTACAAGTTCAAGAGTGCCAGAGATTATGACTCGAT 672
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      AGCATCTTGGGAGAGGCACAGATTTTGACCTCATGATTTCAAATGCGCAGACCGACGAAG 900
                                                                                   

consensus_12319#1      TCCGATCGAGGGGCAATTCATCTCGGTTGCCAACCTGAAGGAGCGGATTTTTGAGTCCAA 732
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      AATATGCTGATGAAGCTACTATGATACCAAAGAACACATCGGTGTTGATTCGTCGGATAC 960
                                                                                   

consensus_12319#1      GCATCTTGGGAGAGGCACAGATTTTGACCTCATGATTTCAAATGCGCAGACCGACGAAGG 792
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      CAGGAAGACCAAGGAAGCCTATTGTAACAGAACCAGAAGAGACAAAAGCCATGGAAGGTA 1020
                                                                                   

consensus_12319#1      TTGGTTCTTCTTAGCGTCGGGCCCTTTGTGTGATTTCTTGTATGAGTGAATGTAAGCAAG 852
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GGGTAGAAGAAACCATGCCTTCTGGTAGTGCTTTTCTTGCTGATGCATCTATGAAATATC 1080
                                                                                   

consensus_12319#1      TTGATAAGGCCAGATAGTATTGCGAATTTGTGATAGACCTAGGTTTTATTGTTGTTTCAT 912
consensus_12319#2      --------GCCAGATAGTATTGCGAATTTGTGATAGACCTAGGTTTTATTGTTGTTTCAT 52
consensus_12319#0      CTGAAGAATCTGAGTGGGATGACGAGTTTGGCAATGATTTA---TATGTTTCTGATTCAG 1137
                                *    * * **  *** ****  *  **  **   * * **  ** **** 

consensus_12319#1      TTGTATGGTAAATCTGTGACTTTCTGATTTGTGCAGTCAAGAGTTCTGCATTGATTCAGT 972
consensus_12319#2      TTGTATGGTAAATCTGTGACTTTCTGATTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAA- 111
consensus_12319#0      TCCCTTCACAGCTCGGTAGCCAGGCGGTTGATGCATCTGAAAATAAAGTTGATGAAGATA 1197
                       *    *   *  ** **  *     * **  ****    * *               *  

consensus_12319#1      TGTATAACACGAAAATTGATGCTCTATCTAGTATCAATAGCTATTATCATTTTTTTTTAC 1032
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GTAAAATAAAAGCACTTATTGATACATCTGCACTCGACTATAGTCAAATTCCTGATGGGT 1257
                                                                                   

consensus_12319#1      CATAGACGCTTTGAATTTTTTGCTGTCATAAGCCTGCTAGGAAATGATTTACAGGATTGT 1092
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      ATGGTGGTGGAAGAGGCTATGGAAGAGGGATGGGTGGAAGAATGATGGGTGGTCGTGGTT 1317
                                                                                   

consensus_12319#1      TGTGG------------------------------------------------------- 1097
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      TTGGACGTGGTGGTCTGGAACGTAGGACACCTCCTGCAGGCTATGCCTGTCATAGATGTA 1377
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      AAGTGCCTGGTCATTTCATTCAACATTGCCCAACAAATGGTGATGCTAGATTTGACATGA 1437
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      AAAGGATGAAACCTCCAACTGGCATTCCAAAATCTATGTTGATGGCAACCCCAGATGGCT 1497
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      CATATGCACTACCAAGTGGGGCTGGTGCTGTCTTGAAGCCAAATGAAGCTGCTTTTGAGA 1557
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      AGGAGATAGAGGGATTACCCACAACCCGCTCACTTGGTGATCTTCCACCAGAGTTACGTT 1617
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GCCCATTGTGTAAAGAAGTAATGAAGGATGCTGTTCTAACTAGTAAATGCTGCTTTAGGA 1677
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GTTTCTGTGATAAATGCATTAGGGACTACATTATAAACAAGTCAATGTGTGTCTGTGGTG 1737
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      CCACAAGCATATTAGCAGACGATCTTCTCCCCAATAAAACTCTAAGAGAAACCATCAGCC 1797
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GGATATTAGAGGCACCACCAACTAGCAGTACAGAAAATGTGGGAAGCATGGTGCAAGTAC 1857
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      AGGATATGGAGTCAGCTATTCCTGTACAGCCCAAGGTTAGGTCTCCAGCTGTTTCTGCTG 1917
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      CTTCAAAGGAAGAACCAAAAAGAACACCTGCACCTGTAGAAGAGTCTCCAGATGTTGAGA 1977
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      GCCATAGCGAAGTGAAAACTACAAATGTTGATATGAGTTCTTCAGATAAGAAGGTCCCCG 2037
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      CATTACCAGATGTTGTTGAAGGAACCATGGAGTCTAAAATTCTGAAAGAAAAAACACCAG 2097
                                                                                   

consensus_12319#1      ------------------------------------------------------------
consensus_12319#2      ------------------------------------------------------------
consensus_12319#0      AAGCAACACCTGTTGTGAAAGAGTCACAGGAAAAAATGCCTGTTGTGGGCGAACAAGTCG 2157
                                                                                   

consensus_12319#1      ---------
consensus_12319#2      ---------
consensus_12319#0      TAAAAGCGG 2166