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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2286 fasta sequence
[TTCTTCCTCCCTGTGCTTTTCCCCTTTCCTTTCTCTGATTTCTCTCAAATGAATTACTGTTACCAGTTGGTGTGATTCTCCAGCCGAAACTTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTGGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCGTTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCTTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAGATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTCAGTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATAGCCTTTGGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGT]
[+] EMBL AK099376 [TTCTTCCTCCCTGTGCTTTTCCCCTTTCCTTTCTCTGATTTCTCTCAAATGAATTACTGTTACCAGTTGGTGTGATTCTCCAGCCGAAACTTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTGGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCGTTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCTTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAGATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTCAGTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATAGCCTTTGGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGA ]
[+] EMBL AK064372 [ AGTTGGTGTGATTCTCCAGCCGAAACTTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTGGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCGTTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCTTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAGATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTCAGTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATAGCCTTTGGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGT]
[+] EMBL CA767214 [ ATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCCACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGGTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATGCCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAANGNTTTTCAGCCAAGCAACTNCCAGCTGTCGTTCAGCCGAATTTGAGAGGAAATAATAATTGTACTGNCTGNTCGGTTGGCGTCTCGGTGACAGGANAAGGCATGNTCCTTATG AAAGGTCAGTCCTGATCACGAATAAGTGGCGCANCATTGCAATTCGTGCNCTGGANAAGGATGATCCAC ]
[+] EMBL CF307302 [ TGATTGTCACTACCTTTGCAGGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTA ]
[+] EMBL CF323786 [ ACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACGCCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATAAGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTTGGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATACCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCC ]
consensusID : consensus_12368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1374 fasta sequence
[TTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTAGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCATTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCCTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTTGATGCTATGAGTTGATTGTCACTACCTTTGCAGGCAAGCTGTTGGGCTACTTTTTATCCCTTTTTTTTCAGACATGGCTAGGTTTATCTTATATCTGATCATTGAAAGCTCTCATC]
[+] EMBL AK107353 [TTCACCAACCAAGCAGGAATGGCGCTCCTGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGCACCGAGTACCTCCGCCGCTTCCTAGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCATTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCATGTGTCATATGCATTGCCTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTTGATGCTATGAGTTGATTGTCACTACCTTTGCAGGCAAGCTGTTGGGCTACTTTTTATCCCTTTTTTTTCAGACATGGCTAGGTTTATCTTATATCTGATCATTGAAAGCTCTCATC]
consensusID : consensus_12368#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 722 fasta sequence
[AAGGGGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATGCCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAAATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTTA-GTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATCGCCTTTGGCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGTTCTCAAAAAAA]
[+] EMBL CB096425 [AAGGGGCAGACATATCCACTTTGCCTGGCCACTATATCCTTTTCTGGGAGCTGACCAATGCCTGTGATAGCAATGTTGCCATTGACATCGACCAAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCAAAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTCTTAGCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATACAAAACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAAATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTTA GTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCCTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTNCACATCGCCTTTGGCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTNCGANGTTTAT ]
[+] EMBL BI798472 [ TTCTTACCCATGGTGCGTTTGATGCTCTGATGGACTTCTTTGTGTCTAGAGGGACATCAGCGAGTCAATAC AAACTCCGACACCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGAAGGTTTTTCAGCCAAGCAACTCCCAGCTGTCGTTCAGCCGAATTTGAGAGGAAATAATAATTGTACTGCCTGTTCGGTTGGCGTCTCGGTGACAGGAGAGGGCATGTTCCTTATGAAAAGTTCAGTCCTGATCACGAATAAGTGGCGCAGCATTGCAATTCGTGCACTGGAGAAGGATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTTACGTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATC CCTTT GCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGTTCTCAAAAAAA]
[-] EMBL AI978342 [ ATGATCCACTCATCTCCATCTTGGCACGTCCTTTTTTA GTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATCGCCTTTGGCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGTTC ]
[+] EMBL AI978343 [ ACTCATCTCCATCTTGGCACGTCCTTTTTTA GTCTGGAATTTGGTCTCAGGAGTATCATTTCGTGTTTTCTTGTAAATTCAGAAAGAACTTCTGTACTGCTCCTTCCACATCGCCTTTGGCCTTCGGCCGGCGTAACTGTAGACACAACCCTTGCTCCGAGGTTTATAAGTTACCTCCGAATTTACTGATTGACTGTGTTCTCAAgtc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12368#0 TTCTTCCTCCCTGTGCTTTTCCCCTTTCCTTTCTCTGATTTCTCTCAAATGAATTACTGT 60
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 TACCAGTTGGTGTGATTCTCCAGCCGAAACTTCACCAACCAAGCAGGAATGGCGCTCCTG 120
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 CTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCACC 180
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 GCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCGGC 240
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 ACCGAGTACCTCCGCCGCTTCCTGGGCGGCGCCGCCGGCGACGACGACGACGTGCGAGAC 300
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 GCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACCGC 360
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 GTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCCTC 420
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 AGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGGAG 480
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 CTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGCAC 540
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 ACCGATCATGGTGAAGACGACGACGGCGGTGGTGGCGAGGGAATGTACCTCATGTTCGCC 600
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 TTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCTACTAC 660
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 CACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCCCCCTG 720
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 GAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTGGCCTA 780
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 CTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGCCGCTGGGTTGGTTCGGGGG 840
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 ATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGGCAGCTC 900
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 AGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTTCAAGGA 960
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 TCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGG 1020
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 ATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATG 1080
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 TCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCGTTGGTCTCACCAATC 1140
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 TATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCAT 1200
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 GTGTCATATGCATTGCTTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAA 1260
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 AATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTT 1320
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 GTTGACCTTGTGGATGTCAAAGTTGGTCGATGCTATGAGTTGATTGTCACTACCTTTGCA 1380
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 ------------------------------------------------------------
consensus_12368#0 GGTCTTTACAGGTACCGGGTGGGTGACCTGTTTACTGTGAGTGGCTTCTACAATGCGACG 1440
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 --------------------------------TTCACCAACCAAGCAGGAATGGCGCTCC 28
consensus_12368#0 CCATTGTTTCACTTCTCAGGACGGCATGATGTCATCCTAAGCATAGATTACGAGAAGATA 1500
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 TGCTGCCGGAGTTCGACCCGGCGGACGTCCGCGCCGGCCGCGACCTCATCCACCGCCTCA 88
consensus_12368#0 AGTGAGGAGGACCTTCTCAATGCCATTGCAGAAACAGATAAGTTCCACCTCAGGCCTCTT 1560
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 CCGCCGACGCCGCCGGCATCCAGCGGGGCGTCCTCCGCGAGATCCTCTCCCGGAACTCCG 148
consensus_12368#0 GGCTACATGCTTGTTGGTAGCACTGCATATGCAGACATATCCACTTTGCCTGGCCACTAT 1620
consensus_12368#2 -------------------------AAGGGGCAGACATATCCACTTTGCCTGGCCACTAT 35
consensus_12368#1 GCACCGAGTACCTCCGCCGCTTCCTAGGCGGCGCCGCCGGCGACGACGACGACGTGCGAG 208
** * ** * * * *
consensus_12368#0 ATCCTTTTCTGGGA-GCTGACCAATACCTG-TGATAGCAATGTTGCCATTGACATCGACC 1678
consensus_12368#2 ATCCTTTTCTGGGA-GCTGACCAATGCCTG-TGATAGCAATGTTGCCATTGACATCGACC 93
consensus_12368#1 ACGCATTCAAGAGGCGCGTCCCCGTGTCCGGCTACGAGGATGTCAAGCCGTACGTCGACC 268
* * ** * * ** ** * * * * **** ** ******
consensus_12368#0 AAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCA 1738
consensus_12368#2 AAACTGCCATGGAGAAGTGTTGCTTGGCAGTGGAAGACCACTTCGATGAAATGTACCGCA 153
consensus_12368#1 GCGTCGCGTCCGGCGGCGAGCCCTCCTCTGCCCTCCTCTGCTCCGACCCCATCACCTGCC 328
** * ** * * * ** *** ** * **
consensus_12368#0 AAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTC--TTAGCCATGGTGC 1796
consensus_12368#2 AAATTAGGCACCGTGGCTCAATCAGTGCGCTCGAGATAAGGATTC--TTAGCCATGGTGC 211
consensus_12368#1 TCAGCAGGAGCTCCGGCACGTCCGGCGGGCAGCAGAAGCTGTTGCCGTCCACCGCGGAGG 388
* *** * *** * * * * ** *** * * * * ** ** *
consensus_12368#0 -GTTTGATGCTCTGATGGACTTCTTTG-TGTCTAGAGGGACATCAGCGAGTCAATACAAA 1854
consensus_12368#2 -GTTTGATGCTCTGATGGACTTCTTTG-TGTCTAGAGGGACATCAGCGAGTCAATACAAA 269
consensus_12368#1 AGCTCGACAGGAAGGTATTCTTCTATGCTGTCCAGGCGCTCGTGAGGAACATGAGCTTGC 448
* * ** * * ***** ** **** ** * * * ** * *
consensus_12368#0 ACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGA 1914
consensus_12368#2 ACTCCGACAGCCATTCGGTCGAAAGAGGCGATGATGGTATTGGAGGAAAGGGTTGTAGGA 329
consensus_12368#1 ACACCGATCATGGTGAAGACGACGACGGCGGTGGTGGC---GAGGGAATGTACCTCATGT 505
** **** * * *** **** ** *** * **** * * *
consensus_12368#0 AGGTTTTTCA-----GCCAAGCAACTCCCAGCTG--TCGTTCAGCCGAATTTGAGAGGAG 1967
consensus_12368#2 AGGTTTTTCA-----GCCAAGCAACTCCCAGCTG--TCGTTCAGCCGAATTTGAGAGGAA 382
consensus_12368#1 TCGCCTTCCACGGTGACCGGACATTGTCTGGCCTGCCCATCCAGTCTGCTCTAACTACCT 565
* ** ** ** ** * ** * * *** * * * *
consensus_12368#0 ATAATAATTGTACTGCCTGTTCGGTTGGCGTC-TCGGTGAC----AGGAGAGGGCATGTT 2022
consensus_12368#2 ATAATAATTGTACTGCCTGTTCGGTTGGCGTC-TCGGTGAC----AGGAGAGGGCATGTT 437
consensus_12368#1 ACTACCACAGCAGACAGTTTCAGGAATGCGACATTGGCGGGTTTGATAAGTGCACAAGCC 625
* * * * * * * ** *** * * ** * * ** * ** *
consensus_12368#0 CCTTATGAAAAGT--TCAGTCCTGATCACGAATAAGTGGCGCA---------GCATTGCA 2071
consensus_12368#2 CCTTATGAAAAGT--TCAGTCCTGATCACGAATAAGTGGCGCA---------GCATTGCA 486
consensus_12368#1 CCCTGGAGGCAATCCTCTGCCCCTATGGCGAGCAGAGCATGTACTGCCAGTTGCTCTGTG 685
** * * * ** * ** ** *** * * * ** **
consensus_12368#0 ATTCG-TGCACTGGAGAAGGATGATCCAC-TCATCTCCATCTTGGCACGTCCTTTTTCAG 2129
consensus_12368#2 ATTCG-TGCACTGGAGAAGGATGATCCAC-TCATCTCCATCTTGGCACGTCCTTTTTTAG 544
consensus_12368#1 GCCTACTTCACCGATGCAGAGTGGACCGTGTTGGTGCCAGCTTTGC-CGCTGGGTTGGTT 744
* *** * * ** ** ** * *** *** ** ** **
consensus_12368#0 TCTGGAATTTGGTCTCAGGAGTATCATTTCGTG----TTTTCTTGTAAATTCAGAAAGAA 2185
consensus_12368#2 TCTGGAATTTGGTCTCAGGAGTATCATTTCGTG----TTTTCTTGTAAATTCAGAAAGAA 600
consensus_12368#1 CGGGGGATCAAGTTCTTGGAAAATCACTGGGAGGAGATGTGCTTCAACATCCGGAGCGGG 804
** ** ** *** **** * * * * * *** * ** * ** *
consensus_12368#0 CTTCTGTACTGCTCCTTC-CACATAGCCTTTGG----------GCGT--AACTGTAGACA 2232
consensus_12368#2 CTTCTGTACTGCTCCTTC-CACATCGCCTTTGGCCTTCGGCCGGCGT--AACTGTAGACA 657
consensus_12368#1 CAGCTCAGCGACTGGATCACGCATACTCCTCTGCGTGATGCGGTCACTGGACAGTATCTT 864
* ** * ** ** * *** * * * * ** ***
consensus_12368#0 CAACCCTTGCTCCGAGGTTTAT------AAGTTACCTCCGAATTTACTGATTGACTGTGT 2286
consensus_12368#2 CAACCCTTGCTCCGAGGTTTAT------AAGTTACCTCCGAATTTACTGATTGACTGTGT 711
consensus_12368#1 CAAGGATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGG 924
*** * ** ** **** * ** * ***** * * * ** **
consensus_12368#0 ------------------------------------------------------------
consensus_12368#2 TCTCAAAAAAA------------------------------------------------- 722
consensus_12368#1 GATGGGATAGTCAGGAGGCTATGGCCTAGGGCACGGTATATCCGGACCATTGTGACTGGT 984
consensus_12368#0 ------------------------------------------------------------
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 TCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGGCTACCATTGGTCTCA 1044
consensus_12368#0 ------------------------------------------------------------
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 CCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCA 1104
consensus_12368#0 ------------------------------------------------------------
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 TCCCATGTGTCATATGCATTGCCTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATG 1164
consensus_12368#0 ------------------------------------------------------------
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 GATGAAAATGGTGAAAAGGTACAAGGAACTACCAGGCTTGATGACAATTTGGGTGAGGTA 1224
consensus_12368#0 ------------------------------------------------------------
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 AAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTTGATGCTATGAGTTGATTGTCACTACC 1284
consensus_12368#0 ------------------------------------------------------------
consensus_12368#2 ------------------------------------------------------------
consensus_12368#1 TTTGCAGGCAAGCTGTTGGGCTACTTTTTATCCCTTTTTTTTCAGACATGGCTAGGTTTA 1344
consensus_12368#0 ------------------------------
consensus_12368#2 ------------------------------
consensus_12368#1 TCTTATATCTGATCATTGAAAGCTCTCATC 1374
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||