cluster # 12617

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Oryza sativa
cluster # 12617 cluster # 12617 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12617#0 length = 1779 sequences # 8
consensus_12617#1 length = 659 sequences # 1

consensus_12617#2 length = 336 sequences # 1
consensus_12617#3 length = 331 sequences # 1

consensusID : consensus_12617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1779
fasta sequence

                              [GCCTCCTCTTGATAC-AGCTCGACCCTGATAGATCTCATAGATCATAGCTGAGAGGGGATCGAGTGGCTTGATCTTGGAAGTGAGCAGCTATAGCTAGATAGGTTTTGCTTGTGCAGGGAGGTGTGTGTTGTGTGTGGGTGACTGCCGGAGACGATGGTTCTGTCGAACCCGGCGATGCTGCCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAACCGGGCCGCCTCCTCGCCGTGCCCCGTCTCCATCATCGCCGACGTCGACATCTACAAGTTCGATCCGTGGGACCTCCCATCCAAGGAGAATTACGGGGACAGGGAGTGGTACTTCTTCAGCCCGAGGGACCGCAAGTACCCGAACGGGATCCGGCCGAACCGCGCCGCGGGCTCCGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCCACAGCAGCGGCGGCGCGGCGACCAACGAGAGCGTCGGCGTCAAGAAGGCGCTCGTCTTCTACAAGGGCCGCCCGCCCAAGGGCACCAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGCCGCAGACGCCCACGCCGCCAACACCTACCGCCCCATGAAGTTCCGCAACACCTCCATGAGGCTGGATGACTGGGTGCTGTGCCGGATCTACAAGAAGAGCAGCCACGCGTCGCCGCTGGCCGTGCCGCCGCTCTCCGACCACGAGCAGGACGAGCCGTGCGCCCTGGAGGAGAACGCGCCGCTGTACGCGCCGTCGTCGTCGAGCGCCGCATCCATGATCTTGCAGGGCGCTGCCGCCGGCGCCTTCCCGTCGCTGCACGCCGCCGCCGCCGCTACGCAGAGGACGGCGATGCAGAAGATCCCTTCCATTTCCGACCTGCTCAACGAGTACTCGCTGTCGCAGCTCTTCGACGACGGCGGCGCCGCCGCCGCCGCCCCCCTGCAGGAGATGGCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGCCACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGACCCGTCCTCCTCTGCGGCCGCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTCACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCTGCTGCCGCGGCGGCCAAGAAGCCGAACGGTTCATGCGTTGGTGCAACTTTCCAAATAGGCAGCGCCTTGCAGGGATCGTCACTGGGACTGAGCCACCAGATGCTGCTCCACTCTAACATGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACAGCCTGATTAAACACTGAACATAATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAAGCA-AATAGGTCCAAAACGATAGATTTAAATAGTAAATATATTGGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGACTAGCTAGGTCGTCCGATCATGCATAGCTATATAGTTTGTGGTGTGTATACA-TTTTTTCT-CATGGTACTATACTACTGTGTACTCAAGCTAGCTCAGTACTAAAGATTAATTAAGCTAGATAGGGGTTGATAAGACTTTGAGATAGACCCACTAGAAGTCTGGAACATGAGATCAAGGAGAATGATGTCAAGATCATAAAGCCGGATTTATAGCTCATATTCATGTAAATCAATCAATAAGTGATTCTTTAATGGCAGCCACTCATTTTTT]

[+] EMBL CB639163             [GCCTCCTCTTGATACAAGCTCGACCCTGATAGATCTCATAGATCATAGCTGAGAGGGGATCGAGTGGCTTGATCTTGGAAGTGAGCAGCTATAGCTAGATAGGTTTTGCTTGTGCAGGGAGGTGTGTGTTGTGTGTGGGTGACTGCCGGAGACGATGGTTCTGTCGAACCCGGCGATTCTTCCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAACCGGGCCGCCTCCTCGCCGTGCCCCGTCTCCATCATCGCCGACGTCGACATCTACAAGTTCGATCCGTGGGACCTCCCATCCAAGGAGAATTACGGGGACAGGGAGTGGTACTTCTTCAGCCCGAGGGACCGCAAGTACCCGAACGGGATCCGGCCGAACCGCGCCGCGGGCTCCGGCTACTGGAAGGCCACCGGCACCGACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB647994             [    CCTCTTGATAC AGCTCGACCCTGATAGATCTCATAGATCATAGCTGAGAGGGGATCGAGTGGCTTGATCTTGGAAGTGAGCAGCTATAGCTAGATAGGTTTTGCTTGTGCAGGGAGGTGTGTGTTGTGTGTGGGTGACTGCCGGAGACGATGGTTCTGTCGAACCCGGCGATGCTGCCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAACCGGGCCGCCTCCTCGCCGTGCCCCGTCTCCATCATCGCCGACGTCGACATCTACAAGTTCGATCCGTGGGACCTCCCATCCAAGGAGAATTACGGGGACAGGGAGTGGTACTTCTTCAGCCCGAGGGACCGCAAGTACCCGAACGGGATCCGGCCGAACCGCGCCGCGGGCTCCGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCCACAGCAGCGGCGGCGCGGCGACCAACGAGAGCGTCGGCGTCAAGAAGGCGCTCGTCTTCTACAAGGGCCGCCCGCCCAAGGGCACCAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGCCGCAGACGCCCACGCCGCCAACACCTACCGCCCCATGAAGTTCCGCAACACCTCCATGAGGCTGGATGACTGGGTGCTGTGCCGGATCTACAAGAAGAGCAGCCACGCGTCGCCGCTGGCCGTGCCGCCGCTCTCCGACCACGAGCAGGACGAGCCGTGCGCCCTGGAGGAGAACGCGCCGCTGTACGCGCCGTCGTCGTCGAGCGCCGCATCCATGATCTTGCAGGGCGCTGCCGCCGGCGCCTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB649165             [              a AGCTCGACCCTGATAGATCTCATAGATCATAGCTGAGAGGGGATCGAGTGGCTTGATCTTGGAAGTGAGCAGCTATAGCTAGATAGGTTTTGCTTGTGCAGGGAGGTGTGTGTTGTGTGTGGGTGACTGCCGGAGACGATGGTTCTGTCGAACCCGGCGATGCTGCCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAACCGGGCCGCCTCCTCGCCGTGCCCCGTCTCCATCATCGCCGACGTCGACATCTACAAGTTCGATCCGTGGGACCTCCCATCCAAGGAGAATTACGGGGACAGGGAGTGGTACTTCTTCAGCCCGAGGGACCGCAAGTACCCGAACGGGATCCGGCCGAACCGCGCCGCGGGCTCCGGCTACTGGAAGGCCACCGGCACCGACAAGCCCATCCACAGCAGCGGCGGCGCGGCGACCAACGAGAGCGTCGGCGTCAAGAAGGCGCTCGTCTTCTACAAGGGCCGCCCGCCCAAGGGCACCAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGCCGCAGACGCCCACGCCGCCAACACCTACCGCCCCATGAAGTTCCGCAACACCTCCATGAGGCTGGATGACTGGGTGCTGTGCCGGATCTACAAGAAGAGCAGCCACGCGTCGCCGCTGGCCGTGCCGCCGCTCTCCGACCACGAGCAGGACGAGCCGTGCGCCCTGGAGGAGAACGCGCCGCTGTACGCGCCGTCGTCGTCGAGCGCCGCATCCATGATCTTGCAGGGCGCTGCCGCCGGCGCCTTCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AA751497             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cggcacgagTGAGGCTGGATGACTGGGTGCTGTGCCGGATCTACAAGAAGAGCAGCCACGCGTCGCCGCTGGCCGTGCCGCCGCTCTCCGACCACGAGCAGGACGAGCCGTGCGCCCTGGAGGAGAACGCGCCGCTGTACGCGCCGTCGTCGTCGAGCGCCGCATCCATGATCTTGCAGGGCGCTGCCGCCGGCGCCTTCCCGTCGCTGCACGCCGCCGCCGCCGCTACGCAGAGGACGGCGATGCAGAAGATCCCTTCCATTTCCGACCTGCTCAACGAGTACTCGCTGTCGCAGCTCTTCGACGACGGCGGCGCCGCCGCCGCCGCCCCCCTGCAGGAGATGGCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGCCACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGACCCGTCCTCCTCTGCGGCCGCCTCGACGTC GCAGGCGCCGTCGTCGAGCCGCCGGCCGTCACCGGGAAGCGCAAGANATCATCGGACGGAGGCGANCCGACNATCCANGCGCTGCCTCCTGCTGCCGCGGNGGGCAANAA CCGAACGGTTCATGCGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB665513             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TACGCGCCGTCGTCGTCGAGCGCCGCATCCATGATCTTGCAGGGCGCTGCCGCCGGCGCCTTCCCGTCGCTGCACGCCGCCGCCGCCGCTACGCAGAGGACGGCGATGCAGAAGATCCCTTCCATTTCCGACCTGCTCAACGAGTACTCGCTGTCGCAGCTCTTCGACGACGGCGGCGCCGCCGCCGCCGCCCCCCTGCAGGAGATGGCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGCCACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGACCCGTCCTCCTCTGCGGCCGCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTCACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCTGCTGCCGCGGCGGCCAAGAAGCCGAACGGTTCATGCGTTGGTGCAACTTTCCAAATAGGCAGCGCCTTGCAGGGATCGTCACTGGGACTGAGCCACCAGATGCTGCTCCACTCTAACATGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACAGCCTGATTAAACACTGAACATAATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAAGCA AATAGGTCCAAAACGATAGATTTAAATAGTAAATATATTGGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGACTAGCTAGGTCGTCCGATCATGCATAGCTATATAGTTTGTGGTGTGTATACA TTTTTTC                                                                                                                                                                                                                     ]
[-] EMBL CB647995             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGACCCGTCCTCCTCTGCGGCCGCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTCACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCTGCTGCCGCGGCGGCCAAGAAGCCGAACGGTTCATGCGTTGGTGCAACTTTCCAAATAGGCAGCGCCTTGCAGGGATCGTCACTGGGACTGAGCCACCAGATGCTGCTCCACTCTAACATGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACAGCCTGATTAAACACTGAACATAATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAAGCA AATAGGTCCAAAACGATAGATTTAAATAGTAAATATATTGGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGACTAGCTAGGTCGTCCGATCATGCATAGCTATATAGTTTGTGGTGTGTATACA TTTTTTCT CATGGTACTATACTACTGTGTACTCAAGCTAGCTCAGTACTAAAGATTAATTAAGCTAGATAGGGGTTGATAAGACTTTGAGATAGACCCACTAGAAGTCTGGAACATGAGATCAAGGAGAATGATGTCAAGATCATAAAGCCGGATTTATAGCTCATATTCATGTAAATCAATCAATAAGTGATTCTTTAATGGCAGCCACTCATTTTTT]
[-] EMBL CB639132             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAGAAGCCGAACGGTTCATGCGTTGGTGCAACTTTCCAAATAGGCAGCCCCTTGCAGGGATCGTCACTGGGACTGAGCCACCAGATGCTGCTCCACTTTAACATGGGGATGAACTGATAGCTCGTTTTTCGTACATAATACCCCAGCCTGATTAAACACTGAACATAATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTTTATTTCAAAAAAA AATAGGTCCAAAACGATAGATTTAAATAGTAAATATATTGGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGACAAGCTAGGTCGTCCGATCATGCAAAGCTAAATAGTTTGTGGTGTGTAAACA TTTTTTCTCCATGGTACTAAACTACTGTGTACTCAAGCTAGCTCAGTACTAAAGATT                                                                                                                                                                   ]
[+] EMBL BI812548             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACTGAGCCACCAGATGCTGCTCCACTCTAACATGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACAGCCTGATTAAAC CTGAACATAATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAAGCACAATAGGTCCCAAACGATAGATTTAAATAGTAAATATATTGGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGACTAGCTAGGTCGTCCGATCATGCATAGCTATATAGTTTGTGGTGTGTATACACTTTTTTCT CATGGTACTATACTACTGTGTACTCAAGCTAGCTCAGTACTAAAGATTAATTAAGCTAGATAGGGGTTGATAAGACTTTGAGATAGACCCACTAGAAGTCTGGAACATGAGATCAAGGAGAATGATGTCAAGATCATAAAGTCGGATTTATTGCTCATATTCATGTAAATCAATC ATAAGTGATTCTTTAATGGCAaaaaaaaaa     ]




>consensus_12617#0
GCCTCCTCTTGATACAGCTCGACCCTGATAGATCTCATAGATCATAGCTGAGAGGGGATC
GAGTGGCTTGATCTTGGAAGTGAGCAGCTATAGCTAGATAGGTTTTGCTTGTGCAGGGAG
GTGTGTGTTGTGTGTGGGTGACTGCCGGAGACGATGGTTCTGTCGAACCCGGCGATGCTG
CCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAAC
CGGGCCGCCTCCTCGCCGTGCCCCGTCTCCATCATCGCCGACGTCGACATCTACAAGTTC
GATCCGTGGGACCTCCCATCCAAGGAGAATTACGGGGACAGGGAGTGGTACTTCTTCAGC
CCGAGGGACCGCAAGTACCCGAACGGGATCCGGCCGAACCGCGCCGCGGGCTCCGGCTAC
TGGAAGGCCACCGGCACCGACAAGCCCATCCACAGCAGCGGCGGCGCGGCGACCAACGAG
AGCGTCGGCGTCAAGAAGGCGCTCGTCTTCTACAAGGGCCGCCCGCCCAAGGGCACCAAG
ACCAACTGGATCATGCACGAGTACCGCCTCGCCGCCGCAGACGCCCACGCCGCCAACACC
TACCGCCCCATGAAGTTCCGCAACACCTCCATGAGGCTGGATGACTGGGTGCTGTGCCGG
ATCTACAAGAAGAGCAGCCACGCGTCGCCGCTGGCCGTGCCGCCGCTCTCCGACCACGAG
CAGGACGAGCCGTGCGCCCTGGAGGAGAACGCGCCGCTGTACGCGCCGTCGTCGTCGAGC
GCCGCATCCATGATCTTGCAGGGCGCTGCCGCCGGCGCCTTCCCGTCGCTGCACGCCGCC
GCCGCCGCTACGCAGAGGACGGCGATGCAGAAGATCCCTTCCATTTCCGACCTGCTCAAC
GAGTACTCGCTGTCGCAGCTCTTCGACGACGGCGGCGCCGCCGCCGCCGCCCCCCTGCAG
GAGATGGCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGC
CACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGAC
CCGTCCTCCTCTGCGGCCGCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTC
ACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCT
GCTGCCGCGGCGGCCAAGAAGCCGAACGGTTCATGCGTTGGTGCAACTTTCCAAATAGGC
AGCGCCTTGCAGGGATCGTCACTGGGACTGAGCCACCAGATGCTGCTCCACTCTAACATG
GGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACAGCCTGATTAAACACTGAACA
TAATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAAGCAAATAGGT
CCAAAACGATAGATTTAAATAGTAAATATATTGGGAAAGAAATTGTACTTAATTTGTACT
TGTGTGGACTAGCTAGGTCGTCCGATCATGCATAGCTATATAGTTTGTGGTGTGTATACA
TTTTTTCTCATGGTACTATACTACTGTGTACTCAAGCTAGCTCAGTACTAAAGATTAATT
AAGCTAGATAGGGGTTGATAAGACTTTGAGATAGACCCACTAGAAGTCTGGAACATGAGA
TCAAGGAGAATGATGTCAAGATCATAAAGCCGGATTTATAGCTCATATTCATGTAAATCA
ATCAATAAGTGATTCTTTAATGGCAGCCACTCATTTTTT

consensusID : consensus_12617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [GGAGATGCCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGCCACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGACCCGTCCTCCTCTGCGGCCCCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTCACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCTGCTGCCGCGGCGGCCAAGAAGCCGACCGGTTCATGCGTTGGTGCAACTTTCCAAATAGGCAGCCCCTTGCAGGGATCGTCCCTGGGACTGAGCCACCAGATGATGCTCCACTCTAACATGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACTAGCCTGATTAAACCCTGACCATAATTGCACATGGGGAATTGATGATTCGATCATTGAGGTCTATTTCGAAAGCAAATAGGTCCAACACGATAGATTTAAATAGTATAATATATTGTGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGCCTAGATAGGTCGTCCGATCATGCATACCTATATAGTTTGTGGAGTGTATACATTTTTTCTCATGGTCGTACAAAAAAGGCATAGAACAGCTTGCGGGGGGGCCGCGG]

[-] EMBL CB665514             [GGAGATGCCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGCCACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGACCCGTCCTCCTCTGCGGCCCCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTCACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCTGCTGCCGCGGCGGCCAAGAAGCCGACCGGTTCATGCGTTGGTGCAACTTTCCAAATAGGCAGCCCCTTGCAGGGATCGTCCCTGGGACTGAGCCACCAGATGATGCTCCACTCTAACATGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACTAGCCTGATTAAACCCTGACCATAATTGCACATGGGGAATTGATGATTCGATCATTGAGGTCTATTTCGAAAGCAAATAGGTCCAACACGATAGATTTAAATAGTATAATATATTGTGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGCCTAGATAGGTCGTCCGATCATGCATACCTATATAGTTTGTGGAGTGTATACATTTTTTCTCATGGTCGTACAAAAAAGGCATAGAACAGCTTGCGGGGGGGCCGCGG]




>consensus_12617#1
GGAGATGCCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGG
CCACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGA
CCCGTCCTCCTCTGCGGCCCCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGT
CACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCC
TGCTGCCGCGGCGGCCAAGAAGCCGACCGGTTCATGCGTTGGTGCAACTTTCCAAATAGG
CAGCCCCTTGCAGGGATCGTCCCTGGGACTGAGCCACCAGATGATGCTCCACTCTAACAT
GGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACTAGCCTGATTAAACCCTGAC
CATAATTGCACATGGGGAATTGATGATTCGATCATTGAGGTCTATTTCGAAAGCAAATAG
GTCCAACACGATAGATTTAAATAGTATAATATATTGTGGAAAGAAATTGTACTTAATTTG
TACTTGTGTGGCCTAGATAGGTCGTCCGATCATGCATACCTATATAGTTTGTGGAGTGTA
TACATTTTTTCTCATGGTCGTACAAAAAAGGCATAGAACAGCTTGCGGGGGGGCCGCGG

consensusID : consensus_12617#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [AANAGGTAAACTCTGGTACACTGTAAATTCTGCTACCTTGTGTGGACTAGCTAGGTCGTCCGATCACTGCACTAGCTATATAGTTTGTGGTGTGTATACACTTTTTTCTCCACTGGTACTATACTACTGTGTACTCACAGCTAGCTCAGTACCTAAAGATTAATTAAGCTAGATAGGGGTTGATAAGACTTTGAGATAGACCCACTAGAAGTCTGGAACATGAGATCAAGGAGAATGATGTCAAGATCATAAAGTCGGATTTATTGCTCATATTCATGTAAATCAATCAATAAGTGATTCTTTAATGCCNCCCACTCATTTTTTTCAAAAAAAAAA]

[+] EMBL BQ906679             [AANAGGTAAACTCTGGTACACTGTAAATTCTGCTACCTTGTGTGGACTAGCTAGGTCGTCCGATCACTGCACTAGCTATATAGTTTGTGGTGTGTATACACTTTTTTCTCCACTGGTACTATACTACTGTGTACTCACAGCTAGCTCAGTACCTAAAGATTAATTAAGCTAGATAGGGGTTGATAAGACTTTGAGATAGACCCACTAGAAGTCTGGAACATGAGATCAAGGAGAATGATGTCAAGATCATAAAGTCGGATTTATTGCTCATATTCATGTAAATCAATCAATAAGTGATTCTTTAATGCCNCCCACTCATTTTTTTCAAAAAAAAAA]




>consensus_12617#2
AANAGGTAAACTCTGGTACACTGTAAATTCTGCTACCTTGTGTGGACTAGCTAGGTCGTC
CGATCACTGCACTAGCTATATAGTTTGTGGTGTGTATACACTTTTTTCTCCACTGGTACT
ATACTACTGTGTACTCACAGCTAGCTCAGTACCTAAAGATTAATTAAGCTAGATAGGGGT
TGATAAGACTTTGAGATAGACCCACTAGAAGTCTGGAACATGAGATCAAGGAGAATGATG
TCAAGATCATAAAGTCGGATTTATTGCTCATATTCATGTAAATCAATCAATAAGTGATTC
TTTAATGCCNCCCACTCATTTTTTTCAAAAAAAAAA

consensusID : consensus_12617#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [GACGAGACAAGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACAGCCTGATTAAACACTGAACATAATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAAGCAAATAGGTCCAAAACGATAGATTTAAATAGTAAATATATTGGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGACTAGCTAGGTCGTCCGATCATGCATAGCTATATAGTTTGTGGTGTGTATACATTTTTTCTCATGGTACTATACTACTGTGTACTCAAGCTAGCTCAGTACTAAAGATTAATTAAGCTAAAAAAAAAAAAAAA]

[+] EMBL CA764608             [GACGAGACAAGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACAGCCTGATTAAACACTGAACATAATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAAGCAAATAGGTCCAAAACGATAGATTTAAATAGTAAATATATTGGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGACTAGCTAGGTCGTCCGATCATGCATAGCTATATAGTTTGTGGTGTGTATACATTTTTTCTCATGGTACTATACTACTGTGTACTCAAGCTAGCTCAGTACTAAAGATTAATTAAGCTAAAAAAAAAAAAAAA]




>consensus_12617#3
GACGAGACAAGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACAGCCTGATTA
AACACTGAACATAATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAA
AGCAAATAGGTCCAAAACGATAGATTTAAATAGTAAATATATTGGGAAAGAAATTGTACT
TAATTTGTACTTGTGTGGACTAGCTAGGTCGTCCGATCATGCATAGCTATATAGTTTGTG
GTGTGTATACATTTTTTCTCATGGTACTATACTACTGTGTACTCAAGCTAGCTCAGTACT
AAAGATTAATTAAGCTAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      GCCTCCTCTTGATACAGCTCGACCCTGATAGATCTCATAGATCATAGCTGAGAGGGGATC 60
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      GAGTGGCTTGATCTTGGAAGTGAGCAGCTATAGCTAGATAGGTTTTGCTTGTGCAGGGAG 120
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      GTGTGTGTTGTGTGTGGGTGACTGCCGGAGACGATGGTTCTGTCGAACCCGGCGATGCTG 180
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      CCGCCGGGGTTCCGGTTCCACCCGACGGACGAGGAGCTGATCGTGCACTACCTCCGCAAC 240
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      CGGGCCGCCTCCTCGCCGTGCCCCGTCTCCATCATCGCCGACGTCGACATCTACAAGTTC 300
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      GATCCGTGGGACCTCCCATCCAAGGAGAATTACGGGGACAGGGAGTGGTACTTCTTCAGC 360
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      CCGAGGGACCGCAAGTACCCGAACGGGATCCGGCCGAACCGCGCCGCGGGCTCCGGCTAC 420
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      TGGAAGGCCACCGGCACCGACAAGCCCATCCACAGCAGCGGCGGCGCGGCGACCAACGAG 480
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      AGCGTCGGCGTCAAGAAGGCGCTCGTCTTCTACAAGGGCCGCCCGCCCAAGGGCACCAAG 540
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      ACCAACTGGATCATGCACGAGTACCGCCTCGCCGCCGCAGACGCCCACGCCGCCAACACC 600
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      TACCGCCCCATGAAGTTCCGCAACACCTCCATGAGGCTGGATGACTGGGTGCTGTGCCGG 660
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      ATCTACAAGAAGAGCAGCCACGCGTCGCCGCTGGCCGTGCCGCCGCTCTCCGACCACGAG 720
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      CAGGACGAGCCGTGCGCCCTGGAGGAGAACGCGCCGCTGTACGCGCCGTCGTCGTCGAGC 780
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      GCCGCATCCATGATCTTGCAGGGCGCTGCCGCCGGCGCCTTCCCGTCGCTGCACGCCGCC 840
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      GCCGCCGCTACGCAGAGGACGGCGATGCAGAAGATCCCTTCCATTTCCGACCTGCTCAAC 900
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      -----------------------------------------------------------G 1
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      GAGTACTCGCTGTCGCAGCTCTTCGACGACGGCGGCGCCGCCGCCGCCGCCCCCCTGCAG 960
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      GAGATGCCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGC 61
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      GAGATGGCGAGGCAGCCCGACCACCACCACCACCAACAACAACAACACGCCCTCTTTGGC 1020
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      CACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGAC 121
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      CACCCCGTCATGAACCATTTCATCGCGAACAACAGCATGGTTCAGCTCGCGCACCTGGAC 1080
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      CCGTCCTCCTCTGCGGCCCCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTC 181
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      CCGTCCTCCTCTGCGGCCGCCTCGACGTCGGCAGGCGCCGTCGTCGAGCCGCCGGCCGTC 1140
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCT 241
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      ACCGGGAAGCGCAAGAGATCATCGGACGGAGGCGAGCCGACGATCCAGGCGCTGCCTCCT 1200
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      GCTGCCGCGGCGGCCAAGAAGCCGACCGGTTCATGCGTTGGTGCAACTTTCCAAATAGGC 301
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      GCTGCCGCGGCGGCCAAGAAGCCGAACGGTTCATGCGTTGGTGCAACTTTCCAAATAGGC 1260
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      AGCCCCTTGCAGGGATCGTCCCTGGGACTGAGCCACCAGATGATGCTCCACTCTAACATG 361
consensus_12617#3      -------------------------------------------------GACGAGACAAG 11
consensus_12617#0      AGCGCCTTGCAGGGATCGTCACTGGGACTGAGCCACCAGATGCTGCTCCACTCTAACATG 1320
consensus_12617#2      ----------------------------------------------AANAGGTAAACTCT 14
                                                                              **   

consensus_12617#1      GGGATGAACTGATAGCTCGTTCTTCGTACATAATACC--ACTAGCCTGATTAA-ACCCTG 418
consensus_12617#3      GGGATGAACTGATAGCTCGTTCTTCGTACATAATACC--AC-AGCCTGATTAA-ACACTG 67
consensus_12617#0      GGGATGAACTGATAGCTCGTTCTTCGTACATAATACC--AC-AGCCTGATTAA-ACACTG 1376
consensus_12617#2      GGTACACTGTAAATTCTGCTACCTTGTGTGGACTAGCTAGGTCGTCCGATCACTGCACTA 74
                       ** *     * *   **  * * * **    * ** *      * * *** *   * ** 

consensus_12617#1      ACCATA-ATTGCACATGGGGAATTGATGATTCGATCATTGAGGTCTATTTCGAAA-GCAA 476
consensus_12617#3      AACATA-ATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAA-GCAA 125
consensus_12617#0      AACATA-ATTGCACATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAA-GCAA 1434
consensus_12617#2      GCTATATAGTTTGTGGTGTGTATACACTTTTTTCTCCACTGGTACTATACTACTGTGTAC 134
                          *** * *       * * **  *   **    *     *  ****        * * 

consensus_12617#1      ATAGGTCCAACACGATAGATTTAAATAGTATAATATATTGTGGAAAGAAATTGTACTTAA 536
consensus_12617#3      ATAGGTCCAAAACGATAGATTTAAATAGTA-AATATATTG-GGAAAGAAATTGTACTTAA 183
consensus_12617#0      ATAGGTCCAAAACGATAGATTTAAATAGTA-AATATATTG-GGAAAGAAATTGTACTTAA 1492
consensus_12617#2      TCACAGCTAGCTCAGTA--CCTAAAGATTA-ATTAAGCTA--GATAGGGGTTG-ATAAGA 188
                         *   * *   *  **    **** * ** * **   *   ** **   *** *    *

consensus_12617#1      TTTGTACTTGTGTGGCCTAGA----TAGGTCGTCCGATCATGCATACCTATATAGTTTGT 592
consensus_12617#3      TTTGTACTTGTGTGGACTAGC----TAGGTCGTCCGATCATGCATAGCTATATAGTTTGT 239
consensus_12617#0      TTTGTACTTGTGTGGACTAGC----TAGGTCGTCCGATCATGCATAGCTATATAGTTTGT 1548
consensus_12617#2      CTTTGAGATAGACCCACTAGAAGTCTGGAACATGAGATCAAGGAGAATGATGTCAAGATC 248
                        **  *  *       ****     * *  * *  ***** * * *   ** *       

consensus_12617#1      GGAGTGTATACATTTTTTCTCATGGTCGTACAAAAAAGGCATAGAACAGCTTGCGGGGGG 652
consensus_12617#3      GGTGTGTATACATTTTTTCTCATGGTACTATACTACTG-TGTACTCAAGCTAGCTCAGTA 298
consensus_12617#0      GGTGTGTATACATTTTTTCTCATGGTACTATACTACTG-TGTACTCAAGCTAGCTCAGTA 1607
consensus_12617#2      ATAAAGTCGGATTTATTGCTCATATTCATGTAAATCAATCA-ATAAGTGATTCTTTAATG 307
                            **     ** ** *****  *  *  *          *     * *         

consensus_12617#1      GCCGCGG----------------------------------------------------- 659
consensus_12617#3      CTAAAGATTAATTAAGCTAAAAAAAAAAAAAAA--------------------------- 331
consensus_12617#0      CTAAAGATTAATTAAGCTAGATAGGGGTTGATAAGACTTTGAGATAGACCCACTAGAAGT 1667
consensus_12617#2      CCNCCCACTCATTTTTTTCAAAAAAAAAA------------------------------- 336
                                                                                   

consensus_12617#1      ------------------------------------------------------------
consensus_12617#3      ------------------------------------------------------------
consensus_12617#0      CTGGAACATGAGATCAAGGAGAATGATGTCAAGATCATAAAGCCGGATTTATAGCTCATA 1727
consensus_12617#2      ------------------------------------------------------------
                                                                                   

consensus_12617#1      ----------------------------------------------------
consensus_12617#3      ----------------------------------------------------
consensus_12617#0      TTCATGTAAATCAATCAATAAGTGATTCTTTAATGGCAGCCACTCATTTTTT 1779
consensus_12617#2      ----------------------------------------------------