cluster # 12618

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Oryza sativa
cluster # 12618 cluster # 12618 Sequences # 11 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12618#0 length = 1206 sequences # 6
consensus_12618#1 length = 750 sequences # 1

consensus_12618#2 length = 735 sequences # 1
consensus_12618#3 length = 595 sequences # 2
consensus_12618#4 length = 561 sequences # 1

consensusID : consensus_12618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1206
fasta sequence

                              [CCTCCTTCGACTTCGATTTTTCGAACTCCCCCGAACACGACGCCGACGAGAAGGAGTCGAGGAGGCTTCGAATCCGCCGNCGNCGCCACCGCCGCCGCCGNCACCGNCGACGNCGACGAGATGTCCTCCCCGGCAGAGTACTACAACTCACTTCCACCAATAAGCAAGGCATATGGAACATTGTGTTTCTTTGCCACTGTACTGTGCCAGCTCCAGATACTGAATCCACCTTTTCTTGCCTTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGATAGCAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCAT-GCTTCTTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACACCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCGGTCCGACCCGCGGCCGCCAACACCGGATCAGGCGCCTTCAGAGGAAGGAGCTACAGACTCAGTCAATAGATCTAACCTAGAGGACACCCTGTGCTGCAAGCCTGCAACGCCTATCTGGGAGATGCAATGTAGAATGAAGCAAGGTACATCAATGGGTCAACCTGGACGCTACTAGACATAGACTGTTCAGCAGCTTCAGGAATTTGGGTTTGCCCATCTAACAGGAATGCTGAATCTGAAATGCTCTATGGGTACAAACGATGTGAAACATTTGCATTGTACGCATGAAATGTTTGTAGGGGAGAAATGTATACTCCCTTTTGTTTTCGGATACTTCTGGCCATGATTTTTTTTCCTACAGTGGATGATGCTTAGCACGTTACTGATTTCAAGATCCGATAAAGGAAAATAACTTTAGGAATTCTA]

[+] EMBL OSC31011             [CCTCCTTCGACTTCGATTTTTCGAACTCCCCCGAACACGACGCCGACGAGAAGGAGTCGAGGAGGCTTCGAATCCGCCGNCGNCGCCACCGCCGCCGCCGNCACCGNCGACGNCGACGAGATGTCCTCCCCGGCAGAGTACTACAACTCACTTCCACCAATAAGCAAGGCATATGGAACATTGTGTTTCTTTGCCACTGTACTGTGCCAGCTCCAGATACTGAATCCACCTTTTCTTGCCTTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB650239             [                                             ACGAGCTTGAGTCGAGGAGGCTTCGAATCCGCCGCCGCCGCCACCGCCGCCGCCGCCACCGCCGCCGCCGACGAGATGTCCTCCCCGGCAGAGTACTACAACTCACTTCCACCAATAAGCAAGGCATATGGAACATTGTGTTTCTTTGCCACTGTACTGTGCCAGCTCCAGATACTGAATCCACCTTTTCTTGCCTTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGATAGCAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCAT GCTTCTTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAATACACCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCGGTCCGA                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB668005             [                                                                                                                                                                                     TGTGTTTCTTTGCCACTGTACTGTGCCAGCTCCAGATACTGAATCCACCTTTTCTTGCCTTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGATAGCAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCAT GCTTCTTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACACCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCGGTCCGACCCGCGGCCGCCAACACCGGATCAGGCGCCTTCAGAGGAAGGAGCTACAGACTCAGTCAATAGATCTAACCTAGAGGACACCCTGTGCTGCAAGCCTGCAACGCCTATCTGGGAGATGCAATGTAGAATGAAGCAAGGTACATCAATGGGTCAACCTGGACGCTACTAGACATAGACTGTTCAGCAGCTTCAGGAATTTGGGGTTG                                                                                                                                                                                                                      ]
[+] EMBL CB000948             [                                                                                                                                                                                                                                                                                                                                 AACTTTGGGATTCGCCTTCTGATGATAGCAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCAT GCTTCTTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACACCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCGGTCCGACCCGCGGCCGCCAACACCGGATCAGGCGCCTTCAGAGGAAGGAGCTACAGACTCAGTCAATAGATCTAACCTAGAGGACACCCTGTGCTGCAAGCCTGCAACGCCTATCTGGGAGATGCAATGTAGAATGAAGCAAGGTACATCAATGGGTCAACCTGGACGCTACTAGACATAGACTGTTCAGCAGCTTCAGGAATTTGGGTTTCCCCATCT                                                                                                                                                                                                               ]
[+] EMBL CA998398             [                                                                                                                                                                                                                                                                                                                                 AACTTTGGGATTCGCCTTCTGATGATAGCAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGATGATATTTGGTGCCATATCACTGCTGGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCATGGCTTCTTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB668006             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAGCTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACCCCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGGGAACGCTCCGGTCCGACCCGCGGCCGCCAACACCGGATCAGGCGCCTTCAGAGGAAGGAGCTACAGACTCAGTCAATAGATTTAACCTAGAGGACCCCCTGTGCTGCAAGCCTGCAACGCCTATCTGGGAGATGCAATGTAGAATGAAGCAAGGTACATCAATGGGTCAACCTGGACGCTATTAGACATAGACTGTTCAGCAGCTTCAGGAATTTGGGTTTGCCCATTTAACAGGAATGCTGAATCTGAAATGCTCTATGGGTACAAACGATGTGAAACATTTGCATTGTACGCATGAAATGTTTGTAGGGGAGAAATGTATACTCCCTTTTGTTTTCGGATACTTCTGGCCATGATTTTTTTTCCTACAGTGGATGATGCTTAGCACGTTACTGATTTCAAGATCCGATAAAGGAAAATAACTTTAGGAATTCTA]




>consensus_12618#0
CCTCCTTCGACTTCGATTTTTCGAACTCCCCCGAACACGACGCCGACGAGAAGGAGTCGA
GGAGGCTTCGAATCCGCCGNCGNCGCCACCGCCGCCGCCGNCACCGNCGACGNCGACGAG
ATGTCCTCCCCGGCAGAGTACTACAACTCACTTCCACCAATAAGCAAGGCATATGGAACA
TTGTGTTTCTTTGCCACTGTACTGTGCCAGCTCCAGATACTGAATCCACCTTTTCTTGCC
TTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTT
TTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGATAGCAAGATACGGC
GTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGATGATA
TTTGGTGCCATATCACTGCTGGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTG
GGAGTACCCATGGTCAGCATGCTTCTTTATGTCTGGAGCAGAGAATATCCGAATTCTCAG
ATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGG
TTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGTTGGACAC
ACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACA
CCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCG
GTCCGACCCGCGGCCGCCAACACCGGATCAGGCGCCTTCAGAGGAAGGAGCTACAGACTC
AGTCAATAGATCTAACCTAGAGGACACCCTGTGCTGCAAGCCTGCAACGCCTATCTGGGA
GATGCAATGTAGAATGAAGCAAGGTACATCAATGGGTCAACCTGGACGCTACTAGACATA
GACTGTTCAGCAGCTTCAGGAATTTGGGTTTGCCCATCTAACAGGAATGCTGAATCTGAA
ATGCTCTATGGGTACAAACGATGTGAAACATTTGCATTGTACGCATGAAATGTTTGTAGG
GGAGAAATGTATACTCCCTTTTGTTTTCGGATACTTCTGGCCATGATTTTTTTTCCTACA
GTGGATGATGCTTAGCACGTTACTGATTTCAAGATCCGATAAAGGAAAATAACTTTAGGA
ATTCTA

consensusID : consensus_12618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 750
fasta sequence

                              [CCCCATTATTATTTTTCTCCTCCTTCGACTTCGATTTTTNGAACTCCCCCGAACACGACGCCGACGAGGAGTCGAGGNNGCTTCGAATCCGCCGCCGCCGCCACCGNCGCCGCCGNCGAGATGTCCTCCCCGGCAGAGNACTACAACTNACTTCCACCAATAAGCAAGGCATATGGAACATTGTGTTTCTTTGCCACTGNACTGTGCCAGCTCCAGATACTGAATCCACCTTTTCTTGCCTTATACTATCCCTTTGAGGTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTTTTCCTGNGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGATAGCAAGATACGGCGNGCANATAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGCGGATGATGATATTTGGTGCCATATCACTGCTGGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCATGCTTCTTTATGNCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTTGGATGTGATATTTTGGCTCANAGATACTCCCTGGCCTTCTGGGAATTCTCCGNTGGACACACGTTCTACTTTCTCTNAANGTTGCACCCGCTAGCCNCCGGGAAGNACTACCTGGAAGACCCCAATGGGGCCNCATAAGAATGGTT]

[+] EMBL CA764951             [CCCCATTATTATTTTTCTCCTCCTTCGACTTCGATTTTTNGAACTCCCCCGAACACGACGCCGACGAGGAGTCGAGGNNGCTTCGAATCCGCCGCCGCCGCCACCGNCGCCGCCGNCGAGATGTCCTCCCCGGCAGAGNACTACAACTNACTTCCACCAATAAGCAAGGCATATGGAACATTGTGTTTCTTTGCCACTGNACTGTGCCAGCTCCAGATACTGAATCCACCTTTTCTTGCCTTATACTATCCCTTTGAGGTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTTTTCCTGNGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGATAGCAAGATACGGCGNGCANATAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGCGGATGATGATATTTGGTGCCATATCACTGCTGGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCATGCTTCTTTATGNCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTTGGATGTGATATTTTGGCTCANAGATACTCCCTGGCCTTCTGGGAATTCTCCGNTGGACACACGTTCTACTTTCTCTNAANGTTGCACCCGCTAGCCNCCGGGAAGNACTACCTGGAAGACCCCAATGGGGCCNCATAAGAATGGTT]




>consensus_12618#1
CCCCATTATTATTTTTCTCCTCCTTCGACTTCGATTTTTNGAACTCCCCCGAACACGACG
CCGACGAGGAGTCGAGGNNGCTTCGAATCCGCCGCCGCCGCCACCGNCGCCGCCGNCGAG
ATGTCCTCCCCGGCAGAGNACTACAACTNACTTCCACCAATAAGCAAGGCATATGGAACA
TTGTGTTTCTTTGCCACTGNACTGTGCCAGCTCCAGATACTGAATCCACCTTTTCTTGCC
TTATACTATCCCTTTGAGGTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTT
TTCCTGNGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGATAGCAAGATACGGC
GNGCANATAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGCGGATGATGATA
TTTGGTGCCATATCACTGCTGGCATTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTG
GGAGTACCCATGGTCAGCATGCTTCTTTATGNCTGGAGCAGAGAATATCCGAATTCTCAG
ATCAGCATGTATGGCCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGG
GTTTGGATGTGATATTTTGGCTCANAGATACTCCCTGGCCTTCTGGGAATTCTCCGNTGG
ACACACGTTCTACTTTCTCTNAANGTTGCACCCGCTAGCCNCCGGGAAGNACTACCTGGA
AGACCCCAATGGGGCCNCATAAGAATGGTT

consensusID : consensus_12618#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 735
fasta sequence

                              [CTGAATCCACCTTTTCTTGCCTTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGATAGAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGAATGATATTTGGTGGCCATATCACTGCCTGGGCATTGTCAGCTCATTACCCTTCCTGGATATTTATTTCCTTGGGAGTATACCCATGGTCAGCACTGCTTCTTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACACCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACCGTCCGGTTCCGACCCGCGTCCGCCAACACCGGTAACACGCCTTCAGCCGGTCCACCACGGCGGTTCCCTTCCATGGTAACCGGCCGGCCCAACCAAATTCCCACCCTCCCAATTGAATTCGTGGTTTGCCCCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSORFB               [CTGAATCCACCTTTTCTTGCCTTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGGAGGCTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGATAGAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTGATTTCTTGTGGATGAATGATATTTGGTGGCCATATCACTGCCTGGGCATTGTCAGCTCATTACCCTTCCTGGATATTTATTTCCTTGGGAGTATACCCATGGTCAGCACTGCTTCTTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACACCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACCGTCCGGTTCCGACCCGCGTCCGCCAACACCGGTAACACGCCTTCAGCCGGTCCACCACGGCGGTTCCCTTCCATGGTAACCGGCCGGCCCAACCAAATTCCCACCCTCCCAATTGAATTCGTGGTTTGCCCCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12618#2
CTGAATCCACCTTTTCTTGCCTTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGG
AGGCTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTT
CTGATGATAGAAGATACGGCGTGCAGTTAGAAAAGGGTGCATTTGAAAAGCGCACAGCTG
ATTTCTTGTGGATGAATGATATTTGGTGGCCATATCACTGCCTGGGCATTGTCAGCTCAT
TACCCTTCCTGGATATTTATTTCCTTGGGAGTATACCCATGGTCAGCACTGCTTCTTTAT
GTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGG
TCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTC
CCTGGCCTTCTGGGAATTCTCGTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCG
CTAGCCACCGGAAAGAACTACCTGAAGACACCAATGTGGGTACATAAGATTGTTGCTCGA
TTCAGAATAGGTGTGCAGGCGAACCGTCCGGTTCCGACCCGCGTCCGCCAACACCGGTAA
CACGCCTTCAGCCGGTCCACCACGGCGGTTCCCTTCCATGGTAACCGGCCGGCCCAACCA
AATTCCCACCCTCCCAATTGAATTCGTGGTTTGCCCCGTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

consensusID : consensus_12618#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence

                              [CCTGGCCAATTTTCTATCAACTTTGGGATTTCCCCTTCTGAT-GA-TA-CCAAGATACCGGCGTTCCACGTTAGAAAA--GGGTCCCACTTTG-AAAAGCGCACACTGATTTC-TTGTGGATGATGATATTTGGTCCCATATCACTGCTGGCACTTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCATGCTTCTCTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGCTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACACCATGTGGGTGTATCCTTTTTTATATGGGTTCATGGCCAAGCATTTCAATCCATGTTC-ATAGCTACTACTACTATATTTTCGATGGTACACGCTCCATGGTTCCTTAACTGCTGTACAGACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCGGT]

[+] EMBL BI809993             [CCTGGCCAATTTTCTATCAACTTTGGGATTTCCCCTTCTGAT GA TA CCAAGATACCGGCGTTCCACGTTAGAAAA  GGGTCCCACTTTG AAAAGCGCACACTGATTTC TTGTGGATGATGATATTTGGTCCCATATCACTGCTGGCACTTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCATGCTTCTCTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGCTTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACACCATGTGGGTGTATCCTTTTTTATATGGGTTCATGGCCAAGCATTTCAATCCATGTTC ATAGCTACTACTACTATATTTTCGATGGTACACGCTCCATGGTTCCTTAACTGCTGTACAGACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCG  ]
[+] EMBL BI808688             [                          ttccgCCCTTTCTGATGGATTAGCCAAGAT CCGGCGT  CAGTTTAGAAAAAGGGGGTGCA TTTGAAAAAGCGCACACTGATTTCTTTGTGGATGATGATATTTGGTGCCATATCACTGCT GCA TTGTCAGCTATTCCCTTCCTGGATATTTATTTCTTGGGAGTACCCATGGTCAGCATGCTTCT TTATGTCTGGA CAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCAT GGCAATGCTT GGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCG TTGGACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGAAGACACCATGTGGGTGTATCCTTTTTTATATGGGTTCATGGCCAAGCATTTCAATCCATGTTCAATAGCTACTACTACTATATTTTCGATGGTACACGCTCCATGGTTCCTTAACTGCTGTACAGACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCGGT]




>consensus_12618#3
CCTGGCCAATTTTCTATCAACTTTGGGATTTCCCCTTCTGATGATACCAAGATACCGGCG
TTCCACGTTAGAAAAGGGTCCCACTTTGAAAAGCGCACACTGATTTCTTGTGGATGATGA
TATTTGGTCCCATATCACTGCTGGCACTTGTCAGCTATTCCCTTCCTGGATATTTATTTC
TTGGGAGTACCCATGGTCAGCATGCTTCTCTTATGTCTGGAGCAGAGAATATCCGAATTC
TCAGATCAGCATGTATGGCCTTGTCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCT
TGGGTTGGATGTGATATTTGGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGCTTG
GACACACGTACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTGA
AGACACCATGTGGGTGTATCCTTTTTTATATGGGTTCATGGCCAAGCATTTCAATCCATG
TTCATAGCTACTACTACTATATTTTCGATGGTACACGCTCCATGGTTCCTTAACTGCTGT
ACAGACATAAGATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCGGT

consensusID : consensus_12618#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [TACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTCCCGGAATACACCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGGGCAGGGGAACGCTCCGGTCCGACCCGCGGCCGCCAACACCGGATCAGGCGCCTTCAGAGGAAGGAGCTACAGACTCAGTCAATAGATCTTCCCTAGAGGACCCCCTGGGGGGCAAGCTTGCAACCCCTATTTGGGGGATGCAATGTTGAATGAAGCAAGGTACATCAAGGGGTCACCCTGGGCGCTTCTAGACATAGGCTGTTCAGCAGCTTCAGGAATTTGGGTTTGCCCCTTTAACAGGAATGGGGAATTTGAAATGTTCTTTGGGTACAAAGGAGGTGAACCATTTGCATTGTACGCATGAAATGTTTGTAGGCGAGAAATGTATACTCCCTTTTGTTTTCGGATACTTTTGGCCATGATTTTTTTTCCTCCAGGGGATGATGTTTAGCACGTTCCTGATTTCAAGATACGATGCCCTAAAACGACTTTAGGAATTCTATGCCTAAGGGTCTGGTTT]

[-] EMBL CB650240             [TACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTCCCGGAATACACCAATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGGGCAGGGGAACGCTCCGGTCCGACCCGCGGCCGCCAACACCGGATCAGGCGCCTTCAGAGGAAGGAGCTACAGACTCAGTCAATAGATCTTCCCTAGAGGACCCCCTGGGGGGCAAGCTTGCAACCCCTATTTGGGGGATGCAATGTTGAATGAAGCAAGGTACATCAAGGGGTCACCCTGGGCGCTTCTAGACATAGGCTGTTCAGCAGCTTCAGGAATTTGGGTTTGCCCCTTTAACAGGAATGGGGAATTTGAAATGTTCTTTGGGTACAAAGGAGGTGAACCATTTGCATTGTACGCATGAAATGTTTGTAGGCGAGAAATGTATACTCCCTTTTGTTTTCGGATACTTTTGGCCATGATTTTTTTTCCTCCAGGGGATGATGTTTAGCACGTTCCTGATTTCAAGATACGATGCCCTAAAACGACTTTAGGAATTCTATGCCTAAGGGTCTGGTTT]




>consensus_12618#4
TACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTCCCGGAATACACCA
ATGTGGGTACATAAGATTGTTGCTCGATTCAGAATAGGTGGGCAGGGGAACGCTCCGGTC
CGACCCGCGGCCGCCAACACCGGATCAGGCGCCTTCAGAGGAAGGAGCTACAGACTCAGT
CAATAGATCTTCCCTAGAGGACCCCCTGGGGGGCAAGCTTGCAACCCCTATTTGGGGGAT
GCAATGTTGAATGAAGCAAGGTACATCAAGGGGTCACCCTGGGCGCTTCTAGACATAGGC
TGTTCAGCAGCTTCAGGAATTTGGGTTTGCCCCTTTAACAGGAATGGGGAATTTGAAATG
TTCTTTGGGTACAAAGGAGGTGAACCATTTGCATTGTACGCATGAAATGTTTGTAGGCGA
GAAATGTATACTCCCTTTTGTTTTCGGATACTTTTGGCCATGATTTTTTTTCCTCCAGGG
GATGATGTTTAGCACGTTCCTGATTTCAAGATACGATGCCCTAAAACGACTTTAGGAATT
CTATGCCTAAGGGTCTGGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12618#2      ------------------------------------------------------------
consensus_12618#3      ------------------------------------------------------------
consensus_12618#1      CCCCATTATTATTTTTCTCCTCCTTCGACTTCGATTTTTNGAACTCCCCCGAACACGACG 60
consensus_12618#0      ------------------CCTCCTTCGACTTCGATTTTTCGAACTCCCCCGAACACGACG 42
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      ------------------------------------------------------------
consensus_12618#3      ------------------------------------------------------------
consensus_12618#1      CCGACGAG---GAGTCGAGGNNGCTTCGAATCCGCCGCCGCCGCCACCGNCGCCGCCGNC 117
consensus_12618#0      CCGACGAGAAGGAGTCGAGGAGGCTTCGAATCCGCCGNCGNCGCCACCGCCGCCGCCGNC 102
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      ------------------------------------------------------------
consensus_12618#3      ------------------------------------------------------------
consensus_12618#1      ---------------GAGATGTCCTCCCCGGCAGAGNACTACAACTNACTTCCACCAATA 162
consensus_12618#0      ACCGNCGACGNCGACGAGATGTCCTCCCCGGCAGAGTACTACAACTCACTTCCACCAATA 162
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      ---------------------------------------------------------CTG 3
consensus_12618#3      ------------------------------------------------------------
consensus_12618#1      AGCAAGGCATATGGAACATTGTGTTTCTTTGCCACTGNACTGTGCCAGCTCCAGATACTG 222
consensus_12618#0      AGCAAGGCATATGGAACATTGTGTTTCTTTGCCACTGTACTGTGCCAGCTCCAGATACTG 222
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      AATCCACCTTTTCTTGCCTTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGGAGG 63
consensus_12618#3      ------------------------------------------------------------
consensus_12618#1      AATCCACCTTTTCTTGCCTTATACTATCCCTTTGAGGTCAAGAAATTTCAGATATGGAGG 282
consensus_12618#0      AATCCACCTTTTCTTGCCTTATACTATCCCTTTGTGTTCAAGAAATTTCAGATATGGAGG 282
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      CTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATT-CGCCTTCT 122
consensus_12618#3      --------------------CCTGGCCAA-TTTTCTATCAACTTTGGGATTTCCCCTTCT 39
consensus_12618#1      CTATTTACAAGCTTCTTTTTCCTGNGCAAGTTTTCTATCAACTTTGGGATT-CGCCTTCT 341
consensus_12618#0      CTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATT-CGCCTTCT 341
consensus_12618#4      ----------TACTACTTCCTCTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTCCCG 50
                                            **           *    * *    ***     *   * 

consensus_12618#2      GATGATAG-AAGATAC-GGCGTGCA--GTTAGAAAAGGGTGC--ATTTGAA-AAGCGCAC 175
consensus_12618#3      GATGATACCAAGATACCGGCGTTCCACGTTAGAAAAGGGTCCCACTTTGAA-AAGCGCAC 98
consensus_12618#1      GATGATAGCAAGATAC-GGCGNGCA--NATAGAAAAGGGTGC--ATTTGAA-AAGCGCAC 395
consensus_12618#0      GATGATAGCAAGATAC-GGCGTGCA--GTTAGAAAAGGGTGC--ATTTGAA-AAGCGCAC 395
consensus_12618#4      GAATACACCAATGTGG----GTACA---TAAGATTGTTGCTCGATTCAGAATAGGTGGGC 103
                       **  * *  **  *      *  *      ***     *  *   *  *** * * *  *

consensus_12618#2      AGCTGATTTCTTGTGGATGAATGATATTTGGTGGCCATATCACTGCCTGGGCATTGTCAG 235
consensus_12618#3      A-CTGATTTCTTGTGGATGA-TGATATTTGGTC-CCATATCACTGCTGGCAC-TTGTCAG 154
consensus_12618#1      AGCTGATTTCTTGCGGATGA-TGATATTTGGTG-CCATATCACTGCTGGCA--TTGTCAG 451
consensus_12618#0      AGCTGATTTCTTGTGGATGA-TGATATTTGGTG-CCATATCACTGCTGGCA--TTGTCAG 451
consensus_12618#4      AGGGGAACGCTCCGGTCCGACCCGCGGCCGCCA---ACACCGGATCAGGCGCCTTCAGAG 160
                       *   **   **   *   **         *      * * *    *  *    **   **

consensus_12618#2      CTC---ATTACCCTTCCTGGATATTTATTTCCTTGGGAGTATACCCATGGTCAGCACTGC 292
consensus_12618#3      CT----ATT-CCCTTCCTGGATATTTATTTC-TTGGGAGTA--CCCATGGTCAGCATGCT 206
consensus_12618#1      CT----ATT-CCCTTCCTGGATATTTATTTC-TTGGGAGTA--CCCATGGTCAGCATG-C 502
consensus_12618#0      CT----ATT-CCCTTCCTGGATATTTATTTC-TTGGGAGTA--CCCATGGTCAGCATG-C 502
consensus_12618#4      GAAGGAGCTACAGACTCAGTCAATAGATCTTCCCTAGAGGAC-CCCCTGGGGGGCAAGCT 219
                               * *     * *   **  ** *      *** *  *** ***   ***    

consensus_12618#2      TTC--TTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCC-TTG 349
consensus_12618#3      TCT--CTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCC-TTG 263
consensus_12618#1      TTC--TTTATGNCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCCCTTG 560
consensus_12618#0      TTC--TTTATGTCTGGAGCAGAGAATATCCGAATTCTCAGATCAGCATGTATGGCC-TTG 559
consensus_12618#4      TGCAACCCCTATTTGGGGGATGCAATGTT-GAAT----GAAGCAAGGTACATCAAG--GG 272
                       *        *   *** * *   *** *  ****      * **   *  **       *

consensus_12618#2      TCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTT---GGATGTGATATTT- 405
consensus_12618#3      TCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTT---GGATGTGATATTT- 319
consensus_12618#1      TCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTTT--GGATGTGATATTTT 618
consensus_12618#0      TCCAACTGAGGTCCTTTTATCTACCATGGGCAATGCTTGGGTT---GGATGTGATATTT- 615
consensus_12618#4      GTCACCCTGGGCGCTTCTA---GACATAGGCTGTTCAGCAGCTTCAGGAATTTGGGTTT- 328
                         ** *   **  *** **     *** ***  * *    * *   ***  *    *** 

consensus_12618#2      GGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCG-TTGGACACACGTACTACTTCCT 464
consensus_12618#3      GGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCGCTTGGACACACGTACTACTTCCT 379
consensus_12618#1      GGCTCANAGATACTCCCTGGCCTTCTGGGAATTCTCCGNTGGACACACGTTCTACTTTCT 678
consensus_12618#0      GGCTCAGAGATACTCCCTGGCCTTCTGGGAATTCTCG-TTGGACACACGTACTACTTCCT 674
consensus_12618#4      GCCCCTTTAACAGGAATGGGGAATTTGA-AATGTTCT-TTGGGTACAAAGGAGGTGAACC 386
                       * * *    * *      **   * **  ***  **   ***  ***           * 

consensus_12618#2      CTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTG-A-AGACACCAATGTGGGTA 522
consensus_12618#3      CTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTG-A-AGACACCA-TGTGGGTG 436
consensus_12618#1      CTNAANGTTGCACCCGCTAGCCNCCGGGAAGNACTACCTGGA-AGACCCCAATGGGGCCN 737
consensus_12618#0      CTCAGTGTTGCACCCGCTAGCCACCGGAAAGAACTACCTG-A-AGACACCAATGTGGGTA 732
consensus_12618#4      ATTTGCATTGTACGCATGAAATGTTTGTAGGCGAGAAATGTATACTCCCTTTTGTTTTCG 446
                        *     *** ** *   *       * * *    *  ** * *  * *   **      

consensus_12618#2      CATAAGATTGTTGCTCGATTCAGAATAGGTGTGC-AGGCGAACCGTCCGGTTCCGACCCG 581
consensus_12618#3      TATCCTTTTTTATATGGGTTCA---TGGCCAAGC-ATTTCAATC--CATGTTCATAGCTA 490
consensus_12618#1      CATAAGAATGGTT----------------------------------------------- 750
consensus_12618#0      CATAAGATTGTTGCTCGATTCAGAATAGGTGTGC-AGGCGAACGCTCCGGTCC-GACCCG 790
consensus_12618#4      GATACTTTTGGCCATGATTTTTTTTCCTCCAGGGGATGATGTTTAGCACGTTCCTGATTT 506
                        **     *                                                   

consensus_12618#2      CGTCCGCCA--ACACCGGTAACACGCCTTCAGCCGGTCCACCACGGCGGTTCCCTTCCAT 639
consensus_12618#3      CTACTACTATATTTTCGATGGTACACGCTCCATGGTTCCTTAACTGCTGTACAGACATAA 550
consensus_12618#1      ------------------------------------------------------------
consensus_12618#0      CGGCCGCCA-ACACCGGATCAGGCGCCTTCAGAGGAAGGAGCTACAGACTCAGTCAATAG 849
consensus_12618#4      CAAGATACG---ATGCCCTAAAACGACTTTAGGAATTCTATGCCTAAGGGTCTGGTTT-- 561
                                                                                   

consensus_12618#2      GGTAACCGGCCGGCCCA-ACCAAATTCCCACCCTCCCAATTGAATTCGTGGTTTGCCCCG 698
consensus_12618#3      GATTGTTGCTCGATTCAGAATAGGTGTGCAGGCGAACGCTCCGGT--------------- 595
consensus_12618#1      ------------------------------------------------------------
consensus_12618#0      ATCTAACCTAGAGGACACCCTGTGCTGCAAGCCTGCAACGCCTATCTGGGAGATGCAATG 909
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 735
consensus_12618#3      ------------------------------------------------------------
consensus_12618#1      ------------------------------------------------------------
consensus_12618#0      TAGAATGAAGCAAGGTACATCAATGGGTCAACCTGGACGCTACTAGACATAGACTGTTCA 969
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      ------------------------------------------------------------
consensus_12618#3      ------------------------------------------------------------
consensus_12618#1      ------------------------------------------------------------
consensus_12618#0      GCAGCTTCAGGAATTTGGGTTTGCCCATCTAACAGGAATGCTGAATCTGAAATGCTCTAT 1029
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      ------------------------------------------------------------
consensus_12618#3      ------------------------------------------------------------
consensus_12618#1      ------------------------------------------------------------
consensus_12618#0      GGGTACAAACGATGTGAAACATTTGCATTGTACGCATGAAATGTTTGTAGGGGAGAAATG 1089
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      ------------------------------------------------------------
consensus_12618#3      ------------------------------------------------------------
consensus_12618#1      ------------------------------------------------------------
consensus_12618#0      TATACTCCCTTTTGTTTTCGGATACTTCTGGCCATGATTTTTTTTCCTACAGTGGATGAT 1149
consensus_12618#4      ------------------------------------------------------------
                                                                                   

consensus_12618#2      ---------------------------------------------------------
consensus_12618#3      ---------------------------------------------------------
consensus_12618#1      ---------------------------------------------------------
consensus_12618#0      GCTTAGCACGTTACTGATTTCAAGATCCGATAAAGGAAAATAACTTTAGGAATTCTA 1206
consensus_12618#4      ---------------------------------------------------------