cluster # 12708

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Oryza sativa
cluster # 12708 cluster # 12708 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12708#0 length = 1483 sequences # 9

consensus_12708#1 length = 814 sequences # 1
consensus_12708#2 length = 514 sequences # 1

consensusID : consensus_12708#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1483
fasta sequence

                              [ACGACTCCTTTTTACCGCAAAGGTTTCGTTTCCTTTTTCCTCCCTCTCGTCGCGGCCGCACCCCGAAGCGGAAGGAAGGAACTCCGAGAGCGCCATCCATCCATCAGCACCACCGCGCGCGGGGGGCGTAGTGGCGGCGGCGGCGGCGGGAGTCGCCGGGGAGATGTGAGAGGGAGAACGACGTGGGGGCCGGAGCGGAGATGGCTGCGGCGGTCGTCGTCGCCGGGGAGGCGGCGGCTGCGGCGGCGGCGGCGGGGGCGGGAGGGAAGAAGCGCGGGGCGTCGAGGAGCTGGATCCTGTTCGACGCGGCGGGGGAGGAGCGGGTGCTGGACGCCGACAAGTACGCCATCATGCACCGCGTCGACATCAACGCGCGCGACCTGCGCATCCTCGACCCGCTGCTCTCCTACCCATCCACCATCCTCGGCCGCGAGCGCGCCATCGTCCTCAATCTCGAGCATATCAAGGCGATCATTACTGCTGAAGAGGTTTTGCTCCGGGATCCATTAGATGATAATGTGATTCCTGTAGTAGAGGAGCTCCGGAGACGACTTGCACCTTCAAGTGCCACTCAACATGATGTGGAAGGTGCTGAAGAAGATGAATCTCCCTTTGAATTCCGCGCACTGGAGGTTACTTTGGAAGCCATTTGCAGTTTTCTTGGTGCACGCACTACTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAGATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATGACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCTCTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAAGCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGTTGTTGGAGGCATACTTCATGCAAATT-GATGGCACATTAAACAAATTGACAACGCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGCGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCAAACTGTAAATTTGAGCTAGAGCAA-CCTTGCGTATGATTAATCTCTTGTACCAAAATTCATCAGTATAAAATTGGGATGATGAAAAAGAACAATAAATAGGAAAAAAAAAGAGTAAATT]

[+] EMBL CB661622             [ACGACTCCTTTTTACCGCAAAGGTTTCGTTTCCTTTTTCCTCCCTCTCGTCGCGGCCGCACCCCGAAGCGGAAGGAAGGAACTCCGAGAGCGCCATCCATCCATCAGCACCACCGCGCGCGGGGGGCGTAGTGGCGGCGGCGGCGGCGGGAGTCGCCGGGGAGATGTGAGAGGGAGAACGACGTGGGGGCCGGAGCGGAGATGGCTGCGGCGGTCGTCGTCGCCGGGGAGGCGGCGGCTGCGGCGGCGGCGGCGGGGGCGGGAGGGAAGAAGCGCGGGGCGTCGAGGAGCTGGATCCTGTTCGACGCGGCGGGGGAGGAGCGGGTGCTGGACGCCGACAAGTACGCCATCATGCACCGCGTCGACATCAACGCGCGCGACCTGCGCATCCTCGACCCGCTGCTCTCCTACCCATCCACCATCCTCGGCCGCGAGCGCGCCATCGTCCTCAATCTCGAGCATATCAAGGCGATCATTACTGCTGAAGAGGTTTTGCTCCGGGATCCATTAGATGATAATGTGATTCCTGTAGTAGAGGAGCTCCGGAGACGACTTGCACCTTCAAGTGCCACTCAACATGATGTGGAAGGTGCTGAAGAAGATGAATCTCCCTTTGAATTCCGCGCACTGGAGGTTACTTTGGAAGCCATTTGCAGTTTTCTTGGTGCACGCACTACTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAGATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAAACATTATTGGACGATGACGATGACATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB662256             [         TTTTACCGCAAAGGTTTCGTTTCCTTTTTCCTCCCTCTCGTCGCGGCCGCACCCCGAAGCGGAAGGAAGGAACTCCGAGAGCGCCATCCATCCATCAGCACCACCGCGCGCGGGGGGCGTAGTGGCGGCGGCGGCGGCGGGAGTCGCCGGGGAGATGTGAGAGGGAGAACGACGTGGGGGCCGGAGCGGAGATGGCTGCGGCGGTCGTCGTCGCCGGGGAGGCGGCGGCTGCGGCGGCGGCGGCGGGGGCGGGAGGGAAGAAGCGCGGGGCGTCCAGGAGCTGGATCCTGTTCGACGCGGCGGGGGAGGAGCGGGTGCTGGACGCCGACAAGTACGCCATCATGCACCGCGTCGACATCAACGCGCGCGACCTGCGCATCCTCGACCCGCTGCTCTCCTACCCATCCACCATCCTCGGCCGCGAGCGCGCCATCGTCCTCAATCTCGAGCATATCAAGGCGATCATTACTGCTGAAGAGGTTTTGCTCCGGGATCCATTAGATGATAATGTGATTCCTGTAGTAGAGGAGCTCCGGAGACGACTTGCACCTTCAAGTGCCACTCAACATGATGTGGAAGGTGCTGAAGAAGATGAATCTCCCTTTGAATTCCGCGCACTGGAGGTTACTTTGGAAGCCATTTGCAGATCTCTTGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB662255             [             ACCGCAAAGGTTTCGTTTCCTTTTTCCTCCCTCTCGTCGCGGCCGCACCCCGAAGCGGAAGGAAGGAACTCCGAGAGCGCCATCCATCCATCAGCACCACCGCGCGCGGGGGGCGTAGTGGCGGCGGCGGCGGCGGGAGTCGCCGGGGAGATGTGAGAGGGAGAACGACGTGGGGGCCGGAGCGGAGATGGCTGCGGCGGTCGTCGTCGCCGGGGAGGCGGCGGCTGCGGCGGCGGCGGCGGGGGCGGGAGGGAAGAAGCGCGGGGCGTCGAGGAGCTGGATCCTGTTCGACGCGGCGGGGGAGGAGCGGGTGCTGGACGCCGACAAGTACGCCATCATGCACCGCGTCGACATCAACGCGCGCGACCTGCGCATCCTCGACCCGCTGCTCTCCTACCCATCCACCATCCTCGGCCGCGAGCGCGCCATCGTCCTCAATCTCGAGCATATCAAGGCGATCATTACTGCTGAAGAGGTTTTGCTCCGGGATCCATTAGATGATAATGTGATTCCTGTAGTAGAGGAGCTCCGGAGACGACTTGCACCTTCAAGTGCCACTCAACATGATGTGGAAGGTGCTGAAGAAGATGAATCTCCCTTTGAATTCCGCGCACTGGAGGTTACTTTGGAAGCCATTTGCAGTTTTCTTGGTGCACGCACTACTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAGATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB656071             [                                                                                                                                                                                                                                         GCGGCCGCTGCGGCGGCGGCGGGGGCGGGAGGGAAGAAGCGCGGGGCGTCGAGGAGCTGGATCCTGTTCGACGCGGCGGGGGAGGAGCGGGTGCTGGACGCCGACAAGTACGCCATCATGCACCGCGTCGACATCAACGCGCGCGACCTGCGCATCCTCGACCCGCTGCTCTCCTACCCATCCACCATCCTCGGCCGCGAGCGCGCCATCGTCCTCAATCTCGAGCATATCAAGGCGATCATTACTGCTGAAGAGGTTTTGCTCCGGGATCCATTAGATGATAATGTGATTCCTGTAGTAGAGGAGCTCCGGAGACGACTTGCACCTTCAAGTGCCACTCAACATGATGTGGAAGGTGCTGAAGAAGATGAATCTCCCTTTGAATTCCGCGCACTGGAGGTTACTTTGGAAGCCATTTGCAGTTTTCTTGGTGCACGCACTACTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAGATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATGACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCTCTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK060249             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTGAATTCCGCGCACTGGAGGTTACTTTGGAAGCCATTTGCAGTTTTCTTGGTGCACGCACTACTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAGATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATGACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCTCTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAAGCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGTTGTTGGAGGCATACTTCATGCAAATT GATGGCACATTAAACAAATTGACAACGCTGAGAGAGTACATTGATGA ACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGCGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCAAACTGTAAATTTGAGCTAGAGCAA CCTTGCGTATGATTAATCTCTTGTACCAAAATTCATCAGTATAAAATTGGGATGATGAAAAAGAACAATAAATAGGAAAAAAAAAGAGTAAATT]
[+] EMBL CA767318             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CACTACTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACATCCAAGATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATGACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCTCTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAAGCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGTTGTTGGAGGCATACTTCATGCAAATT GATGGCACATTAAACAAATTGACAACGCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGCGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCAAACTGTAAATTTGAGCTAGAGCAACCCTTGCGTATGATTAATCTCTTGTACCAAAATTCATCAGTATAAAATTGGGATGATGA                                    ]
[-] EMBL CB656072             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATGACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCTCTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAAGCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGTTGTTGGAGGCATACTTCATGCAAATT GATGGCACATTAAACAAATTGACAACGCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGCGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCAAACTGTAAATTTGAGCTAGAGCAA CCTTGCGTATGATTAATCTCTTGTACCAAAATTCATCAGTATAAAATTGGGATGA                                       ]
[+] EMBL AA750752             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCTCTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAAGCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGTTGTTGGAGGCATACTTCATGCAAATTGGATGGCACATTAAACAAATTGCCAACGCTGAGAGAGTACAT                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU030154             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGATGTTGTTGGAGGCATACTTCATGCAAATT GATGGCACATTAAACAAATTGACAACGCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGNGNACGC CGG AAAAGG                                                                                                                                                  ]




>consensus_12708#0
ACGACTCCTTTTTACCGCAAAGGTTTCGTTTCCTTTTTCCTCCCTCTCGTCGCGGCCGCA
CCCCGAAGCGGAAGGAAGGAACTCCGAGAGCGCCATCCATCCATCAGCACCACCGCGCGC
GGGGGGCGTAGTGGCGGCGGCGGCGGCGGGAGTCGCCGGGGAGATGTGAGAGGGAGAACG
ACGTGGGGGCCGGAGCGGAGATGGCTGCGGCGGTCGTCGTCGCCGGGGAGGCGGCGGCTG
CGGCGGCGGCGGCGGGGGCGGGAGGGAAGAAGCGCGGGGCGTCGAGGAGCTGGATCCTGT
TCGACGCGGCGGGGGAGGAGCGGGTGCTGGACGCCGACAAGTACGCCATCATGCACCGCG
TCGACATCAACGCGCGCGACCTGCGCATCCTCGACCCGCTGCTCTCCTACCCATCCACCA
TCCTCGGCCGCGAGCGCGCCATCGTCCTCAATCTCGAGCATATCAAGGCGATCATTACTG
CTGAAGAGGTTTTGCTCCGGGATCCATTAGATGATAATGTGATTCCTGTAGTAGAGGAGC
TCCGGAGACGACTTGCACCTTCAAGTGCCACTCAACATGATGTGGAAGGTGCTGAAGAAG
ATGAATCTCCCTTTGAATTCCGCGCACTGGAGGTTACTTTGGAAGCCATTTGCAGTTTTC
TTGGTGCACGCACTACTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACAT
CCAAGATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGAT
TGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATG
ACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCT
CTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAA
GCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGT
TGTTGGAGGCATACTTCATGCAAATTGATGGCACATTAAACAAATTGACAACGCTGAGAG
AGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGT
TAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGG
TTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACAACCATGGATACGTAT
TCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTG
CGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCAAACTGTAAATTTGAG
CTAGAGCAACCTTGCGTATGATTAATCTCTTGTACCAAAATTCATCAGTATAAAATTGGG
ATGATGAAAAAGAACAATAAATAGGAAAAAAAAAGAGTAAATT

consensusID : consensus_12708#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 814
fasta sequence

                              [TAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATGACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCTCTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAAGCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGTTGTTGGAGGTCTTTTTTGTTTTTCTGCATCACAATGTCTTGTCATTCTCTGGCTGAGATACTAAAAGTTTCTTAAATTTGCAGGCATACTTCATGCAAATTGATGGCACATTAAACAAATTGACAACGCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGCGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCAAACTGTAAATTTGAGCTAGAGCAACCTTGCGTATGATTAATCTCTTGTACCAAAATTCATCAGTATAAAATTGGGATGATGAAAAAGAACAATAAATAGGAAAAAAAAAGAGTAAATTC]

[-] EMBL CB661623             [TAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATGACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCTCTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAAGCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGTTGTTGGAGGTCTTTTTTGTTTTTCTGCATCACAATGTCTTGTCATTCTCTGGCTGAGATACTAAAAGTTTCTTAAATTTGCAGGCATACTTCATGCAAATTGATGGCACATTAAACAAATTGACAACGCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGCGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCAAACTGTAAATTTGAGCTAGAGCAACCTTGCGTATGATTAATCTCTTGTACCAAAATTCATCAGTATAAAATTGGGATGATGAAAAAGAACAATAAATAGGAAAAAAAAAGAGTAAATTC]




>consensus_12708#1
TAGGGTGCGGAAGTTAAAAAGTGGTATGACACGATTGAATGCGAGGGTTCAGAAGGTGAG
AGATGAACTTGAACAATTATTGGACGATGACGATGACATGGCTGATCTTTACTTGTCCAG
AAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCTCTGGTGGACCAAATTGGTTCCCAGC
ATCCCCGACTATTGGTTCAAAAATATCAAGAGCAAGCAGAGCCAGTGCCCCAACTATACA
TGGAAATGAAAATGATGTTGAAGAGCTAGAGATGTTGTTGGAGGTCTTTTTTGTTTTTCT
GCATCACAATGTCTTGTCATTCTCTGGCTGAGATACTAAAAGTTTCTTAAATTTGCAGGC
ATACTTCATGCAAATTGATGGCACATTAAACAAATTGACAACGCTGAGAGAGTACATTGA
TGACACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGTTAATTCAGCT
AGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGGTTGCCGGAAT
TTTTGGTATGAACATTCCATACACCTGGAATGACAACCATGGATACGTATTCAAATGGGT
GGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGCGTACGCACG
GCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCAAACTGTAAATTTGAGCTAGAGCAAC
CTTGCGTATGATTAATCTCTTGTACCAAAATTCATCAGTATAAAATTGGGATGATGAAAA
AGAACAATAAATAGGAAAAAAAAAGAGTAAATTC

consensusID : consensus_12708#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [CGAAGAGCTAGAGATNTTNTTGGAGGCNTACTTCATGCAAATTGATGGCNCNTTAAACAAATTGACANCNCTGAGAGAGTACATTGATGACNCAGAAGATTACATTAATATCCAGCTTGACAACCNCCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGNCCGTNTNCCTGTCGCTTTACTCATTGGTTNCCGGAATTTTTGGTATGAACATTCCATACNCCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGCGTACGCNCGGCNCAAGGGCCTCGTCGGGTCGTGANCCTTGCCCAAACTGTAAATTTGNGCTAGNGCAACCTTGCGTNTGATTAATCTCTTGTACCAAAATTCATCNGTNTAAAATTGGGNTGATGAAAAAGAACNATAAATNGGNAAAAANNNGNGTNNNTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU075779             [CGAAGAGCTAGAGATNTTNTTGGAGGCNTACTTCATGCAAATTGATGGCNCNTTAAACAAATTGACANCNCTGAGAGAGTACATTGATGACNCAGAAGATTACATTAATATCCAGCTTGACAACCNCCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGNCCGTNTNCCTGTCGCTTTACTCATTGGTTNCCGGAATTTTTGGTATGAACATTCCATACNCCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGTTCGTCTCCATTGTTGCGTACGCNCGGCNCAAGGGCCTCGTCGGGTCGTGANCCTTGCCCAAACTGTAAATTTGNGCTAGNGCAACCTTGCGTNTGATTAATCTCTTGTACCAAAATTCATCNGTNTAAAATTGGGNTGATGAAAAAGAACNATAAATNGGNAAAAANNNGNGTNNNTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_12708#2
CGAAGAGCTAGAGATNTTNTTGGAGGCNTACTTCATGCAAATTGATGGCNCNTTAAACAA
ATTGACANCNCTGAGAGAGTACATTGATGACNCAGAAGATTACATTAATATCCAGCTTGA
CAACCNCCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGNCCGTNTNCCT
GTCGCTTTACTCATTGGTTNCCGGAATTTTTGGTATGAACATTCCATACNCCTGGAATGA
CAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCAT
GTTCGTCTCCATTGTTGCGTACGCNCGGCNCAAGGGCCTCGTCGGGTCGTGANCCTTGCC
CAAACTGTAAATTTGNGCTAGNGCAACCTTGCGTNTGATTAATCTCTTGTACCAAAATTC
ATCNGTNTAAAATTGGGNTGATGAAAAAGAACNATAAATNGGNAAAAANNNGNGTNNNTT
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12708#0      ACGACTCCTTTTTACCGCAAAGGTTTCGTTTCCTTTTTCCTCCCTCTCGTCGCGGCCGCA 60
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      CCCCGAAGCGGAAGGAAGGAACTCCGAGAGCGCCATCCATCCATCAGCACCACCGCGCGC 120
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      GGGGGGCGTAGTGGCGGCGGCGGCGGCGGGAGTCGCCGGGGAGATGTGAGAGGGAGAACG 180
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      ACGTGGGGGCCGGAGCGGAGATGGCTGCGGCGGTCGTCGTCGCCGGGGAGGCGGCGGCTG 240
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      CGGCGGCGGCGGCGGGGGCGGGAGGGAAGAAGCGCGGGGCGTCGAGGAGCTGGATCCTGT 300
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      TCGACGCGGCGGGGGAGGAGCGGGTGCTGGACGCCGACAAGTACGCCATCATGCACCGCG 360
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      TCGACATCAACGCGCGCGACCTGCGCATCCTCGACCCGCTGCTCTCCTACCCATCCACCA 420
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      TCCTCGGCCGCGAGCGCGCCATCGTCCTCAATCTCGAGCATATCAAGGCGATCATTACTG 480
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      CTGAAGAGGTTTTGCTCCGGGATCCATTAGATGATAATGTGATTCCTGTAGTAGAGGAGC 540
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      TCCGGAGACGACTTGCACCTTCAAGTGCCACTCAACATGATGTGGAAGGTGCTGAAGAAG 600
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      ATGAATCTCCCTTTGAATTCCGCGCACTGGAGGTTACTTTGGAAGCCATTTGCAGTTTTC 660
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      TTGGTGCACGCACTACTGAGTTGGAGAGTGCTGCTTACCCAGCTTTGGATGAACTGACAT 720
consensus_12708#1      ------------------------------------------------------------
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      CCAAGATTAGCAGCCGCAACTTGGATAGGGTGCGGAAGTTAAAAAGTGGTATGACACGAT 780
consensus_12708#1      -------------------------TAGGGTGCGGAAGTTAAAAAGTGGTATGACACGAT 35
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      TGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATG 840
consensus_12708#1      TGAATGCGAGGGTTCAGAAGGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATG 95
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      ACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCT 900
consensus_12708#1      ACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCT 155
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      CTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAA 960
consensus_12708#1      CTGGTGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAA 215
consensus_12708#2      ------------------------------------------------------------
                                                                                   

consensus_12708#0      GCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGT 1020
consensus_12708#1      GCAGAGCCAGTGCCCCAACTATACATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGT 275
consensus_12708#2      -------------------------------------------CGAAGAGCTAGAGATNT 17
                                                                   ************** *

consensus_12708#0      TGTTGGAGG--------------------------------------------------- 1029
consensus_12708#1      TGTTGGAGGTCTTTTTTGTTTTTCTGCATCACAATGTCTTGTCATTCTCTGGCTGAGATA 335
consensus_12708#2      TNTTGGAGG--------------------------------------------------- 26
                       * *******                                                   

consensus_12708#0      ------------------------CATACTTCATGCAAATTGATGGCACATTAAACAAAT 1065
consensus_12708#1      CTAAAAGTTTCTTAAATTTGCAGGCATACTTCATGCAAATTGATGGCACATTAAACAAAT 395
consensus_12708#2      ------------------------CNTACTTCATGCAAATTGATGGCNCNTTAAACAAAT 62
                                               * ********************* * **********

consensus_12708#0      TGACAACGCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACA 1125
consensus_12708#1      TGACAACGCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACA 455
consensus_12708#2      TGACANCNCTGAGAGAGTACATTGATGACNCAGAAGATTACATTAATATCCAGCTTGACA 122
                       ***** * ********************* ******************************

consensus_12708#0      ACCACCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGT 1185
consensus_12708#1      ACCACCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGT 515
consensus_12708#2      ACCNCCGTAATCAGTTAATTCAGCTAGAGCTATTCTTGAGTTCTGGGNCCGTNTNCCTGT 182
                       *** ******************************************* **** * *****

consensus_12708#0      CGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACA 1245
consensus_12708#1      CGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACATTCCATACACCTGGAATGACA 575
consensus_12708#2      CGCTTTACTCATTGGTTNCCGGAATTTTTGGTATGAACATTCCATACNCCTGGAATGACA 242
                       ***************** ***************************** ************

consensus_12708#0      ACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGT 1305
consensus_12708#1      ACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGT 635
consensus_12708#2      ACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATGT 302
                       ************************************************************

consensus_12708#0      TCGTCTCCATTGTTGCGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCA 1365
consensus_12708#1      TCGTCTCCATTGTTGCGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCA 695
consensus_12708#2      TCGTCTCCATTGTTGCGTACGCNCGGCNCAAGGGCCTCGTCGGGTCGTGANCCTTGCCCA 362
                       ********************** **** ********************** *********

consensus_12708#0      AACTGTAAATTTGAGCTAGAGCAACCTTGCGTATGATTAATCTCTTGTACCAAAATTCAT 1425
consensus_12708#1      AACTGTAAATTTGAGCTAGAGCAACCTTGCGTATGATTAATCTCTTGTACCAAAATTCAT 755
consensus_12708#2      AACTGTAAATTTGNGCTAGNGCAACCTTGCGTNTGATTAATCTCTTGTACCAAAATTCAT 422
                       ************* ***** ************ ***************************

consensus_12708#0      CAGTATAAAATTGGGATGATGAAAAAGAACAATAAATAGGAAAAAAAAAGAGTAAATT-- 1483
consensus_12708#1      CAGTATAAAATTGGGATGATGAAAAAGAACAATAAATAGGAAAAAAAAAGAGTAAATTC- 814
consensus_12708#2      CNGTNTAAAATTGGGNTGATGAAAAAGAACNATAAATNGGNAAAAANNNGNGTNNNTTCC 482
                       * ** ********** ************** ****** ** *****   * **   **  

consensus_12708#0      --------------------------------
consensus_12708#1      --------------------------------
consensus_12708#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 514