cluster # 12921

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Oryza sativa
cluster # 12921 cluster # 12921 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12921#0 length = 2215 sequences # 8

consensus_12921#1 length = 1213 sequences # 3

consensusID : consensus_12921#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2215
fasta sequence

                              [CATTACAGGGAAGAAGATGGCATTGCTAAGTGTCAGCTCATCTCATCATGCCATCCATCCAGGTAGTAGCAGGAGCATGCAGTGCATCTGCACCAGGGTGACACCATCCAGATCAGTGGGAGAAATATCAAGATCAAGATCAAGAAATGATCTTCCTCTGGGTGTTTCACCGTCGTCGAGGATGCTCACGACATGTACTCTCAAGACTCCTTCCTATGGCAACAAGTCGAAGTCGAAGGAGAAGATCAATCCGAGAGACATGTTCACCTTCTCCTACAGATTCAACACTGACATCCCCATGACCGAGACTCCAGGGGCATCCATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGGAGCCGTGTTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGATGAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCTGTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGAGTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTACAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGGGTCGCTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGTCGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGGCGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGCAGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACACCCTGAAAGTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAAGCATTCACTGCCAGTAGTAATAGAGATGGCAGTCACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATTCAGCATGATGGCAACATAATTGTATTGTTCATCAAGCCTCAAGAAAAGATGGAGAGAATAACTTAACAGATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTACATAATGGCAAGAATAATCAATTTACTGAGATTGTTAATATCTCGAGCTATTGGACATGTTTTCTGTCAGATTTGACTTCCTTTCCTCTTAGGCTATTGTGGATGTATGTACCACGTGCTATTGTGGATCTACATACCACGTAGTATACAGGGCCTAGGGCCTTTGCTTCAACAGCTAGACGAATATACAATTAGAAGTTCTATACTATGTATCAGAAAGACTCTAGTCTTCCAATGATCTCTTTCTTGCCCTTAAGTCGCGCTCAAGGCTTTGAGGCAATGGAGGGGTCCTACCACGACGGAAAAGGACGGCAAGAGCTTTCATTTTATGGCAGATGTTGAAAACCGATGATGCCTCTATCTCTGCAATCCCCTCACAACCTTGGCCGCCACCCTGTAGAATGTCACAGTATTTTGCAGCATCGTCCTCGTCTTCAAATACCAGTATTCCCTCTCTGATATCTTCAACAAGCATGTTAAACTTGGAACCAGAGTATTTTGATTTAGTCCCAACTCCTGAACCCCCTCCCTTTAAGAGCATTCCAAGTTCCCTTTCAACTTCACTGCGACTCCTACGGGTTTTCATTGTCCATAGATGGTTATCTCTTCTAGCCAGTACATAGACTGGTTTGGAGTCTTCTCTCCATGGGTTTGTCTCCAACACATCGTAGGCGAGGGAGTCGAGCGATTCCATGAGGTGGCGCCGCATGCCGTACGCGCGGGAGGAGACGCGGCGCAGGAACTCGCCGGAGGTGCCAGGGATGCCGCCGTCCATCCCCATCGCCCTCTCCACCTCCTCCTCCTCCTCACCACCACCATCACCCCCCTCCCGCGATGGCGGGGGCGGGGGCCGGGACGAGGCCGCGGCGACCACCGCCCTGCGGTGCGAGACGGCGAGGCGGGGCAGCGGCGGGGGCAGGGAGAGGAGGGACGAGGTCAGGTTCCCCGCCAGCGCGGTCGTCGCCGCCGGCACCGGCGCCTGATGCGGCGGCGGTGAGAGGGATGGCAAGCAAGCTGCCATTTCTACGTTCTTCCCTGGAAGCGTGGAGCAGTGGAGATGAGAAAATCGAGAGAGAGAGAGAGAGGAAAAAAAAAGTTGGGAGTAAAATCGGGAGAAGAGAAGAG]

[+] EMBL AK069941             [CATTACAGGGAAGAAGATGGCATTGCTAAGTGTCAGCTCATCTCATCATGCCATCCATCCAGGTAGTAGCAGGAGCATGCAGTGCATCTGCACCAGGGTGACACCATCCAGATCAGTGGGAGAAATATCAAGATCAAGATCAAGAAATGATCTTCCTCTGGGTGTTTCACCGTCGTCGAGGATGCTCACGACATGTACTCTCAAGACTCCTTCCTATGGCAACAAGTCGAAGTCGAAGGAGAAGATCAATCCGAGAGACATGTTCACCTTCTCCTACAGATTCAACACTGACATCCCCATGACCGAGACTCCAGGGGCATCCATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGGAGCCGTGTTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGATGAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCTGTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGAGTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTACAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGGGTCGCTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGTCGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGGCGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGCAGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACACCCTGAAAGTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAAGCATTCACTGCCAGTAGTAATAGAGATGGCAGTCACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATTCAGCATGATGGCAACATAATTGTATTGTTCATCAAGCCTCAAGAAAAGATGGAGAGAATAACTTAACAGATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTACATAATGGCAAGAATAATCAATTTACTGAGATTGTTAATATCTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB665207             [                                       ATCTCATCATGCCATCCATCCAGGTAGTAGCAGGAGCATGCAGTGCATCTGCACCAGGGTGACACCATCCAGATCAGTGGGAGAAATATCAAGATCAAGATCAAGAAATGATCTTCCTCTGGGTGTTTCACCGTCGTCGAGGATGCTCACGACATGTACTCTCAAGACTCCTTCCTATGGCAACAAGTCGAAGTCGAAGGAGAAGATCAATCCGAGAGACATGTTCACCTTCTCCTACAGATTCAACACTGACATCCCCATGACCGAGACTCCAGGGGCATCCATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGGAGCCGTGTTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGATGAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCTGTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGAGTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTACAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGGGTCGCTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGTCGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGGCGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGCAGCCGATTTC AGAGGTACAGGAGGGAGAAGCTAACTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB665208             [                                                                                                                                                                                                                                                                                                                                  ATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGGAGCCGTGTTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGATGAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCTGTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGAGTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTACAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGGGTCGCTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGTCGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGGCGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGCAGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACACCCTGAAAGTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAAGCATTCACTGCCAGTAGTAATAGAGATGGCAGTCACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATTCAGCATGATGGCAACATAATTGTATTGTTCATCAAGCCTCAAGAAAAGATGGAGAGAATAACTTAACAGATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTACATAATGGCAAGAATAATCAATTTACTGAGATTGTTAATATCTCGAGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CF311649             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGGCGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGCAGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACACCCTGAAAGTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAGGCATTCACTGCCAGTAGTAATAGAGATGGCAGTGACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATTCAGCATGATGGCAACATAATTGTATTGTTCATCAAGCCTCAAGAAAAGATGGAGAGAATAACTTAACAGATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTACATAATGGCAAGAATAATCAATTTACTGAGATTGTTAAaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB668151             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GATCTCATTTATTCACCGTAAACTGAAGCATTTAGAATGTACATAATGGCAAGAATAATCAATTTACTGAGATTGTTAATATCTCGAGCTATTGGACATGTTTTCTGTCAGATTTGACTTCCTTTCCTCTTAGGCTATTGTGGATGTATGTACCACGTGCTATTGTGGATCTACATACCACGTAGTATACAGGGCCTAGGGCCTTTGCTTCAACAGCTAGACGAATATACAATTAGAAGTTCTATACTATGTATCAGAAAGACTCTAGTCTTCCAATGATCTCTTTCTTGCCCTTAAGTCGCGCTCAAGGCTTTGAGGCAATGGAGGGGTCCTACCACGACGGAAAAGGACGGCAAGAGCTTTCATTTTATGGCAGATGTTGAAAACCGATGATGCCTCTATCTCTGCAATCCCCTCACAACCTTGGCCGCCACCCTGTAGAATGTCACAGTATTTTGCAGCATCGTCCTCGTCTTCAAATACCAGTATTCCCTCTCTGATATCTTCAACAAGCATGTTAAACTTGGAACCAGAGTATTTTGATTTAGTCCCAACTCCTGAACCCCCTCCCTTTAAGAGCATTCCAAGTTCCCTTTCAACTTCACTGCGACTCCTACGGGTTTTCATTGTCCATAGATGGTTATCTCTTCTAGCCAGTACATAGACTGGTTTGGAGTCTTCTCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB666306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTACATAATGGCAAGAATAATCAATTTACTGAGATTGTTAATATCTCGAGCTATTGGACATGTTTTCTGTCAGATTTGACTTCCTTTCCTCTTAGGCTATTGTGGATGTATGTACCACGTGCTATTGTGGATCTACATACCACGTAGTATACAGGGCCTAGGGCCTTTGCTTCAACAGCTAGACGAATATACAATTAGAAGTTCTATACTATGTATCAGAAAGACTCTAGTCTTCCAATGATCTCTTTCTTGCCCTTAAGTCGCGCTCAAGGCTTTGAGGCAATGGAGGGGTCCTACCACGACGGAAAAGGACGGCAAGAGCTTTCATTTTATGGCAGATGTTGAAAACCGATGATGCCTCTATCTCTGCAATCCCCTCACAACCTTGGCCGCCACCCTGTAGAATGTCACAGTATTTTGCAGCATCGTCCTCGTCTTCAAATACCAGTATTCCCTCTCTGATATCTTCAACAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AK099530             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAATGGCAAGAATAATCAATTTACTGAGATTGTTAATATCTCGAGCTATTGGACATGTTTTCTGTCAGATTTGACTTCCTTTCCTCTTAGGCTATTGTGGATGTATGTACCACGTGCTATTGTGGATCTACATACCACGTAGTATACAGGGCCTAGGGCCTTTGCTTCAACAGCTAGACGAATATACAATTAGAAGTTCTATACTATGTATCAGAAAGACTCTAGTCTTCCAATGATCTCTTTCTTGCCCTTAAGTCGCGCTCAAGGCTTTGAGGCAATGGAGGGGTCCTACCACGACGGAAAAGGACGGCAAGAGCTTTCATTTTATGGCAGATGTTGAAAACCGATGATGCCTCTATCTCTGCAATCCCCTCACAACCTTGGCCGCCACCCTGTAGAATGTCACAGTATTTTGCAGCATCGTCCTCGTCTTCAAATACCAGTATTCCCTCTCTGATATCTTCAACAAGCATGTTAAACTTGGAACCAGAGTATTTTGATTTAGTCCCAACTCCTGAACCCCCTCCCTTTAAGAGCATTCCAAGTTCCCTTTCAACTTCACTGCGACTCCTACGGGTTTTCATTGTCCATAGATGGTTATCTCTTCTAGCCAGTACATAGACTGGTTTGGAGTCTTCTCTCCATGGGTTTGTCTCCAACACATCGTAGGCGAGGGAGTCGAGCGATTCCATGAGGTGGCGCCGCATGCCGTACGCGCGGGAGGAGACGCGGCGCAGGAACTCGCCGGAGGTGCCAGGGATGCCGCCGTCCATCCCCATCGCCCTCTCCACCTCCTCCTCCTCCTCACCACCACCATCACCCCCCTCCCGCGATGGCGGGGGCGGGGGCCGGGACGAGGCCGCGGCGACCACCGCCCTGCGGTGCGAGACGGCGAGGCGGGGCAGCGGCGGGGGCAGGGAGAGGAGGGACGAGGTCAGGTTCCCCGCCAGCGCGGTCGTCGCCGCCGGCACCGGCGCCTGATGCGGCGGCGGTGAGAGGGATGGCAAGCAAGCTGCCATTTCTACGTTCTTCCCTGGAAGCGTGGAGCAGTGGAGATGAGAAAATCGAGAGAGAGAGAGAGAGGAAAAAAAAAGTTGGGAGTAAAATCGGGAGAAGAGAAGAG]
[+] EMBL CB668150             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAAAANTTCTATACTATGTATCAAAAAGACTCTAGGCTTCCAATGATCTCTTTCTTGCCCTTAAGTCACGCTCAAGGCTTTGAGGCAATGGAGGGGTCCTACCACGACGGAAAAGGACGGCAAGAGCTTTCATTTTATGGCAGATGTTGAAAACCGATGATGCCTCTATCTCTGCAATCCCCTCACAACCTTGGCCGCCACCCTGTAGAATGTCACAGTATTTTGCAGCATCATCCTCGTCTTCAAATACCAGTATTCCCTCTCTGATATCTTCAACAAGCATGGTAAACTTGGAACCAAAGTATTTTGATTTAGTCCCAACTCCTGAACCCCCTCCCTTTAAGAGCATTCCAAGTTCCCTTTCAACTTCACTGCGACTCCTACGGGTTTTCATTGCCCATAGATGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]




>consensus_12921#0
CATTACAGGGAAGAAGATGGCATTGCTAAGTGTCAGCTCATCTCATCATGCCATCCATCC
AGGTAGTAGCAGGAGCATGCAGTGCATCTGCACCAGGGTGACACCATCCAGATCAGTGGG
AGAAATATCAAGATCAAGATCAAGAAATGATCTTCCTCTGGGTGTTTCACCGTCGTCGAG
GATGCTCACGACATGTACTCTCAAGACTCCTTCCTATGGCAACAAGTCGAAGTCGAAGGA
GAAGATCAATCCGAGAGACATGTTCACCTTCTCCTACAGATTCAACACTGACATCCCCAT
GACCGAGACTCCAGGGGCATCCATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGG
AGCCGTGTTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGATGAAGAATGGAGCGTGCA
GCTTCTGCCGATCCAGTTCCTGTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGT
AAGCAAATCCGGCGGCAAGGAGTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCT
GCTCATGGAAGTGACGGACTACAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCA
CCTCGCCCTGACCGTCCGCGGGTCGCTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAG
GGGCCACGTCGAGATGAGCGTCGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGA
GGGCGTCATCAGAGGCGTCGGCGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCA
GGATTTCGACAATGGCCTGGCAGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGA
AAAGAAGACTACACCCTGAAAGTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTT
TCCAAGCATTCACTGCCAGTAGTAATAGAGATGGCAGTCACTACACCAAATTGTTTGGAG
CTCATCTGATCATCAGCAATTCAGCATGATGGCAACATAATTGTATTGTTCATCAAGCCT
CAAGAAAAGATGGAGAGAATAACTTAACAGATCTCATTTATTCATTGTAAACTGAAGCAT
TTAGAATGTACATAATGGCAAGAATAATCAATTTACTGAGATTGTTAATATCTCGAGCTA
TTGGACATGTTTTCTGTCAGATTTGACTTCCTTTCCTCTTAGGCTATTGTGGATGTATGT
ACCACGTGCTATTGTGGATCTACATACCACGTAGTATACAGGGCCTAGGGCCTTTGCTTC
AACAGCTAGACGAATATACAATTAGAAGTTCTATACTATGTATCAGAAAGACTCTAGTCT
TCCAATGATCTCTTTCTTGCCCTTAAGTCGCGCTCAAGGCTTTGAGGCAATGGAGGGGTC
CTACCACGACGGAAAAGGACGGCAAGAGCTTTCATTTTATGGCAGATGTTGAAAACCGAT
GATGCCTCTATCTCTGCAATCCCCTCACAACCTTGGCCGCCACCCTGTAGAATGTCACAG
TATTTTGCAGCATCGTCCTCGTCTTCAAATACCAGTATTCCCTCTCTGATATCTTCAACA
AGCATGTTAAACTTGGAACCAGAGTATTTTGATTTAGTCCCAACTCCTGAACCCCCTCCC
TTTAAGAGCATTCCAAGTTCCCTTTCAACTTCACTGCGACTCCTACGGGTTTTCATTGTC
CATAGATGGTTATCTCTTCTAGCCAGTACATAGACTGGTTTGGAGTCTTCTCTCCATGGG
TTTGTCTCCAACACATCGTAGGCGAGGGAGTCGAGCGATTCCATGAGGTGGCGCCGCATG
CCGTACGCGCGGGAGGAGACGCGGCGCAGGAACTCGCCGGAGGTGCCAGGGATGCCGCCG
TCCATCCCCATCGCCCTCTCCACCTCCTCCTCCTCCTCACCACCACCATCACCCCCCTCC
CGCGATGGCGGGGGCGGGGGCCGGGACGAGGCCGCGGCGACCACCGCCCTGCGGTGCGAG
ACGGCGAGGCGGGGCAGCGGCGGGGGCAGGGAGAGGAGGGACGAGGTCAGGTTCCCCGCC
AGCGCGGTCGTCGCCGCCGGCACCGGCGCCTGATGCGGCGGCGGTGAGAGGGATGGCAAG
CAAGCTGCCATTTCTACGTTCTTCCCTGGAAGCGTGGAGCAGTGGAGATGAGAAAATCGA
GAGAGAGAGAGAGAGGAAAAAAAAAGTTGGGAGTAAAATCGGGAGAAGAGAAGAG

consensusID : consensus_12921#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1213
fasta sequence

                              [GGGAAGAAGATGGCATTGCTAAGTGTCAGCTCATCTCATCATGCCATCCATCCAGGTAGTAGCAGGAGCATGCAGTGCATCTGCACCAGGGTGACACCATCCAGATCAGTGGGAGAAATATCAAGATCAAGATCAAGAAATGATCTTCCTCTGGGTGTTTCACCGTCGTCGAGGATGCTCACGACATGTACTCTCAAGACTCCTTCCTATGGCAACAAGTCGAAGTCGAAGGAGAAGATCAATCCGAGAGACATGTTCACCTTCTCCTACAGATTCAACACTGACATCCCCATGACCGAGACTCCAGGGGCATCCATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGGAGCCGTGTTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGATCAACAATTTCTCTCCGGCGATCATGGCTTCATTTCTGCAAGGATGATCAGCTTTTTCTATTTCTGCGAGGCTAAAAGAGAGTTCTTTTTTTTTCTGCAGGAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCTGTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGAGTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTACAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGGGTCGCTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGTCGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGGCGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGCAGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACA-CCCTGAAAGTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAAGCATTCACTGCCAGTAGTAATAGAGATGGCAGTCACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATTCAGCATGATGGCAACATAATTGTATTGTTCATCAAGCCTCAAGAAAAGATGGAGAGAATAACTTAACAGATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTGCATAATGGCAAGAATAATCAATTACTGAGAT]

[+] EMBL CB657632             [GGGAAGAAGATGGCATTGCTAAGTGTCAGCTCATCTCATCATGCCATCCATCCAGGTAGTAGCAGGAGCATGCAGTGCATCTGCACCAGGGTGACACCATCCAGATCAGTGGGAGAAATATCAAGATCAAGATCAAGAAATGATCTTCCTCTGGGTGTTTCACCGTCGTCGAGGATGCTCACGACATGTACTCTCAAGACTCCTTCCTATGGCAACAAGTCGAAGTCGAAGGAGAAGATCAATCCGAGAGACATGTTCACCTTCTCCTACAGATTCAACACTGACATCCCCATGACCGAGACTCCAGGGGCATCCATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGGAGCCGTGTTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGATCAACAATTTCTCTCCGGCGATCATGGCTTCATTTCTGCAAGGATGATCAGCTTTTTCTATTTCTGCGAGGCTAAAAGAGAGTTCTTTTTTTTTCTGCAGGAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCTGTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGAGTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTACAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGGGTCGCTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB657633             [                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGCTTTTTCTATTTCTGCGAGGCTAAAAGAGAGTTCTTTTTTTTTCTGCAGGAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCTGTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGAGTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTACAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGGGTCGCTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGTCGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGGCGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGCAGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACA CCCTGAAAGTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAAGCATTCACTGCCAGTAGTAATAGAGATGGCAGTCACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATTCAGCATGATGGCAACATAATTGTATTGTTCATCAAGCCTCAAGAAAAGATGGAGAGAATAACTTAACAGATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTGCATAATGGCAAGAATAATCAATTACTGAGAT]
[+] EMBL BQ907179             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccgGTGACGGACTACAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGGGTC CTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGTCGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGGCGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGCAGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACACCCCTGAAAGTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAAGCATTCACTGCCAGTAGTAATAGAGATGGCAGTCACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATTCAGCATGATGGCAACATAACNGTATTGTTCATCAAGCCTCAAAAAAAaa                                                                                           ]




>consensus_12921#1
GGGAAGAAGATGGCATTGCTAAGTGTCAGCTCATCTCATCATGCCATCCATCCAGGTAGT
AGCAGGAGCATGCAGTGCATCTGCACCAGGGTGACACCATCCAGATCAGTGGGAGAAATA
TCAAGATCAAGATCAAGAAATGATCTTCCTCTGGGTGTTTCACCGTCGTCGAGGATGCTC
ACGACATGTACTCTCAAGACTCCTTCCTATGGCAACAAGTCGAAGTCGAAGGAGAAGATC
AATCCGAGAGACATGTTCACCTTCTCCTACAGATTCAACACTGACATCCCCATGACCGAG
ACTCCAGGGGCATCCATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGGAGCCGTG
TTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGATCAACAATTTCTCTCCGGCGATCAT
GGCTTCATTTCTGCAAGGATGATCAGCTTTTTCTATTTCTGCGAGGCTAAAAGAGAGTTC
TTTTTTTTTCTGCAGGAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCTGTTCCTG
TCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGAGTACCCG
CCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTACAAGCTG
GACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGGGTCGCTG
TACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGTCGGCTTC
AACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGGCGAGACG
GTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGCAGCCGAT
TTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACACCCTGAAAGTTTTTT
CAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAAGCATTCACTGCCAGTAGTAATAG
AGATGGCAGTCACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATTCAGCATG
ATGGCAACATAATTGTATTGTTCATCAAGCCTCAAGAAAAGATGGAGAGAATAACTTAAC
AGATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTGCATAATGGCAAGAATAAT
CAATTACTGAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12921#0      CATTACAGGGAAGAAGATGGCATTGCTAAGTGTCAGCTCATCTCATCATGCCATCCATCC 60
consensus_12921#1      -------GGGAAGAAGATGGCATTGCTAAGTGTCAGCTCATCTCATCATGCCATCCATCC 53
                              *****************************************************

consensus_12921#0      AGGTAGTAGCAGGAGCATGCAGTGCATCTGCACCAGGGTGACACCATCCAGATCAGTGGG 120
consensus_12921#1      AGGTAGTAGCAGGAGCATGCAGTGCATCTGCACCAGGGTGACACCATCCAGATCAGTGGG 113
                       ************************************************************

consensus_12921#0      AGAAATATCAAGATCAAGATCAAGAAATGATCTTCCTCTGGGTGTTTCACCGTCGTCGAG 180
consensus_12921#1      AGAAATATCAAGATCAAGATCAAGAAATGATCTTCCTCTGGGTGTTTCACCGTCGTCGAG 173
                       ************************************************************

consensus_12921#0      GATGCTCACGACATGTACTCTCAAGACTCCTTCCTATGGCAACAAGTCGAAGTCGAAGGA 240
consensus_12921#1      GATGCTCACGACATGTACTCTCAAGACTCCTTCCTATGGCAACAAGTCGAAGTCGAAGGA 233
                       ************************************************************

consensus_12921#0      GAAGATCAATCCGAGAGACATGTTCACCTTCTCCTACAGATTCAACACTGACATCCCCAT 300
consensus_12921#1      GAAGATCAATCCGAGAGACATGTTCACCTTCTCCTACAGATTCAACACTGACATCCCCAT 293
                       ************************************************************

consensus_12921#0      GACCGAGACTCCAGGGGCATCCATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGG 360
consensus_12921#1      GACCGAGACTCCAGGGGCATCCATCGATGAGTACCTTCAGAACAGGCCCAGGATTGTTGG 353
                       ************************************************************

consensus_12921#0      AGCCGTGTTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGAT----------------- 403
consensus_12921#1      AGCCGTGTTCCCTGATAAGCGCAAGAGAACCAAGCTCAGTGATCAACAATTTCTCTCCGG 413
                       *******************************************                 

consensus_12921#0      ------------------------------------------------------------
consensus_12921#1      CGATCATGGCTTCATTTCTGCAAGGATGATCAGCTTTTTCTATTTCTGCGAGGCTAAAAG 473
                                                                                   

consensus_12921#0      ----------------------GAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCT 441
consensus_12921#1      AGAGTTCTTTTTTTTTCTGCAGGAAGAATGGAGCGTGCAGCTTCTGCCGATCCAGTTCCT 533
                                             **************************************

consensus_12921#0      GTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGA 501
consensus_12921#1      GTTCCTGTCGGCGTCGCCGGTGATCGTGATGCGGTTCGTAAGCAAATCCGGCGGCAAGGA 593
                       ************************************************************

consensus_12921#0      GTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTA 561
consensus_12921#1      GTACCCGCCGCACGTCCCCGTCAAGGCAACCAGCCTCCTGCTCATGGAAGTGACGGACTA 653
                       ************************************************************

consensus_12921#0      CAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGG 621
consensus_12921#1      CAAGCTGGACGGGCTGGACAGCAACGCGATGCCGTCGCACCTCGCCCTGACCGTCCGCGG 713
                       ************************************************************

consensus_12921#0      GTCGCTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGT 681
consensus_12921#1      GTCGCTGTACCCGCGGCCGGAGGGGAGGAAGAGCCTGAGGGGCCACGTCGAGATGAGCGT 773
                       ************************************************************

consensus_12921#0      CGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGG 741
consensus_12921#1      CGGCTTCAACCTGCCGCCGGTGCTCGCGCTGGTGCCGGAGGGCGTCATCAGAGGCGTCGG 833
                       ************************************************************

consensus_12921#0      CGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGC 801
consensus_12921#1      CGAGACGGTGCTGAGGCAGCTAGCACTGCAGATGAAGCAGGATTTCGACAATGGCCTGGC 893
                       ************************************************************

consensus_12921#0      AGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACACCCTGAAA 861
consensus_12921#1      AGCCGATTTCAAGAGGTACAGGAGGGAGAAGCTAACTGAAAAGAAGACTACACCCTGAAA 953
                       ************************************************************

consensus_12921#0      GTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAAGCATTCACTGCCAGTA 921
consensus_12921#1      GTTTTTTCAAGCATTTCATTTCAAAAATAGAAGATCTTTTCCAAGCATTCACTGCCAGTA 1013
                       ************************************************************

consensus_12921#0      GTAATAGAGATGGCAGTCACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATT 981
consensus_12921#1      GTAATAGAGATGGCAGTCACTACACCAAATTGTTTGGAGCTCATCTGATCATCAGCAATT 1073
                       ************************************************************

consensus_12921#0      CAGCATGATGGCAACATAATTGTATTGTTCATCAAGCCTCAAGAAAAGATGGAGAGAATA 1041
consensus_12921#1      CAGCATGATGGCAACATAATTGTATTGTTCATCAAGCCTCAAGAAAAGATGGAGAGAATA 1133
                       ************************************************************

consensus_12921#0      ACTTAACAGATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTACATAATGGCAA 1101
consensus_12921#1      ACTTAACAGATCTCATTTATTCATTGTAAACTGAAGCATTTAGAATGTGCATAATGGCAA 1193
                       ************************************************ ***********

consensus_12921#0      GAATAATCAATTTACTGAGATTGTTAATATCTCGAGCTATTGGACATGTTTTCTGTCAGA 1161
consensus_12921#1      GAATAATCAATT-ACTGAGAT--------------------------------------- 1213
                       ************ ********                                       

consensus_12921#0      TTTGACTTCCTTTCCTCTTAGGCTATTGTGGATGTATGTACCACGTGCTATTGTGGATCT 1221
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      ACATACCACGTAGTATACAGGGCCTAGGGCCTTTGCTTCAACAGCTAGACGAATATACAA 1281
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      TTAGAAGTTCTATACTATGTATCAGAAAGACTCTAGTCTTCCAATGATCTCTTTCTTGCC 1341
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      CTTAAGTCGCGCTCAAGGCTTTGAGGCAATGGAGGGGTCCTACCACGACGGAAAAGGACG 1401
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      GCAAGAGCTTTCATTTTATGGCAGATGTTGAAAACCGATGATGCCTCTATCTCTGCAATC 1461
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      CCCTCACAACCTTGGCCGCCACCCTGTAGAATGTCACAGTATTTTGCAGCATCGTCCTCG 1521
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      TCTTCAAATACCAGTATTCCCTCTCTGATATCTTCAACAAGCATGTTAAACTTGGAACCA 1581
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      GAGTATTTTGATTTAGTCCCAACTCCTGAACCCCCTCCCTTTAAGAGCATTCCAAGTTCC 1641
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      CTTTCAACTTCACTGCGACTCCTACGGGTTTTCATTGTCCATAGATGGTTATCTCTTCTA 1701
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      GCCAGTACATAGACTGGTTTGGAGTCTTCTCTCCATGGGTTTGTCTCCAACACATCGTAG 1761
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      GCGAGGGAGTCGAGCGATTCCATGAGGTGGCGCCGCATGCCGTACGCGCGGGAGGAGACG 1821
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      CGGCGCAGGAACTCGCCGGAGGTGCCAGGGATGCCGCCGTCCATCCCCATCGCCCTCTCC 1881
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      ACCTCCTCCTCCTCCTCACCACCACCATCACCCCCCTCCCGCGATGGCGGGGGCGGGGGC 1941
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      CGGGACGAGGCCGCGGCGACCACCGCCCTGCGGTGCGAGACGGCGAGGCGGGGCAGCGGC 2001
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      GGGGGCAGGGAGAGGAGGGACGAGGTCAGGTTCCCCGCCAGCGCGGTCGTCGCCGCCGGC 2061
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      ACCGGCGCCTGATGCGGCGGCGGTGAGAGGGATGGCAAGCAAGCTGCCATTTCTACGTTC 2121
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      TTCCCTGGAAGCGTGGAGCAGTGGAGATGAGAAAATCGAGAGAGAGAGAGAGAGGAAAAA 2181
consensus_12921#1      ------------------------------------------------------------
                                                                                   

consensus_12921#0      AAAAGTTGGGAGTAAAATCGGGAGAAGAGAAGAG 2215
consensus_12921#1      ----------------------------------