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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1068 fasta sequence
[GAGTAGAAAACAACAGCCAAGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG-GCGT-CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCA-GGGGTTGCTGGCATCCTTGCGAC-TGATTTGATACGTGTATCA--GGAATCAACAACCTGCCAGTG-TGGTTTGAAGCAGGTGCAAC-AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTATGGAAAAGGAAATTTCCTTCCCTAGCAAAAAAA]
[+] EMBL CF300261 [GAGTAGAAAACAACAGCCAAGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCG ]
[+] EMBL AW070157 [ ggcaggtCAGCCAAGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATC ]
[+] EMBL CF311678 [ AGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCA GGGGTTGCTGGCATCCTTGCGAC TGATTTGATACGTGTATCA GGAATCAACAACCTGCCAGTG TGGTTTGAAGCAGGTGCAAC AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGC ]
[+] EMBL CF325551 [ GAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCCAACTTGAAATGGTATGTT ]
[+] EMBL CF302103 [ CAACACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCA GGGGTTGCTGGCATCCTTGCGAC TGATTTGATACGTGTATCA GGAATCAACAACCTGCCAGTG TGGTTTGAAGCAGGTGCAAC AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTG ]
[+] EMBL AK066291 [ CACTGAAGCAACCAAAATCTTACAGCGGCGGCAGCCATG GCGT CGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCA GGGGTTGCTGGCATCCTTGCGAC TGATTTGATACGTGTATCA GGAATCAACAACCTGCCAGTG TGGTTTGAAGCAGGTGCAAC AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTATGGAAAAGGAAATTTC ]
[+] EMBL OSS14351A [ CAGCGGCGGCA CATGNGCGTNCGTTAGGAGCTAACAGCCATGGCCGAGTCCTGCACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGC GCCATTCCTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGCGTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCGATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTCAAGCCGAACTTGTGCACTTCCGGTTTNCGATGGCAGGGGGTTTCTGGCATCCTTGCGACTTAATTTGATACGTGTATCAAGGGAATCAACAACCTGCCAGTGTTGGTTTTAAGCAGGTTCAACAAAAATTCGATTTCGgt ]
[-] EMBL CF311679 [ TCA GGAATCAACAACCTGCCAGTG TGGTTTGAAGCAGGTGCAAC AAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTA GGAAAAGGAAATTTCCTTCCCTAGCAAAAAAA]
[+] EMBL AK061711 [ CACAGCCAGGCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTATGGAAAAGGAAATTTC ]
[-] EMBL CF302104 [ GGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTA GGAAAAGGAAATTTCCTTCCCTAGCAAAAAA ]
[-] EMBL CF300262 [ GAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACATTAATTGTTTATGGAAAAGGAAATTTCCTTCCC ]
consensusID : consensus_13316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[TNCCAGTGTGGTTTGAAGCAGGTGCAACAAAATTCGATTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTNCCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU096579 [TNCCAGTGTGGTTTGAAGCAGGTGCAACAAAATTCGATTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTNCCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13316#0 GAGTAGAAAACAACAGCCAAGAAGGCCCCTTGCAGCGGCGGCAACACTGAAGCAACCAAA 60
consensus_13316#1 ------------------------------------------------------------
consensus_13316#0 ATCTTACAGCGGCGGCAGCCATGGCGTCGTTAGGAGCTAACAGCCATGGCCGAGTCCTGC 120
consensus_13316#1 ------------------------------------------------------------
consensus_13316#0 ACACCTGCACACTCTCCCCAAAGCCGGTTACAGCTTTGAGCAGAAGCATGGCGGCCATTC 180
consensus_13316#1 ------------------------------------------------------------
consensus_13316#0 CTGGACACCATGTTTTTCAGTCTCCACGAGCTCGGATTGCAGTGCGAGCTAGCACCGAGC 240
consensus_13316#1 ------------------------------------------------------------
consensus_13316#0 GTGCGACCTGGCTGCCTGGGCTCGATCCACCTCCTCACCTCGACGGCACATTACCTGGCG 300
consensus_13316#1 ------------------------------------------------------------
consensus_13316#0 ATTTCGGATTTGATCCCCTGGGTCTCGGGGAGGAACCGGCAAACTTGAAATGGTATGTTC 360
consensus_13316#1 ------------------------------------------------------------
consensus_13316#0 AAGCCGAACTTGTGCACTGCCGGTTTGCGATGGCAGGGGTTGCTGGCATCCTTGCGACTG 420
consensus_13316#1 ------------------------------------------------------------
consensus_13316#0 ATTTGATACGTGTATCAGGAATCAACAACCTGCCAGTGTGGTTTGAAGCAGGTGCAACAA 480
consensus_13316#1 ------------------------------TNCCAGTGTGGTTTGAAGCAGGTGCAACAA 30
* ****************************
consensus_13316#0 AATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTG 540
consensus_13316#1 AATTCGA-TTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTG 89
******* ****************************************************
consensus_13316#0 CTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACAT 600
consensus_13316#1 CTGAAACCAAGAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACAT 149
************************************************************
consensus_13316#0 TCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTACCCTGGGGGTCCACTGT 660
consensus_13316#1 TCCTTGGTATCGAGGCTGCACTTGCAGGTTCACAGCCAGGCTNCCCTGGGGGTCCACTGT 209
****************************************** *****************
consensus_13316#0 TTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAA 720
consensus_13316#1 TTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAACTGAAAGAAA 269
************************************************************
consensus_13316#0 TCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGA 780
consensus_13316#1 TCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGA 329
************************************************************
consensus_13316#0 CTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATA 840
consensus_13316#1 CTCATGTTGGACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATA 389
************************************************************
consensus_13316#0 TCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTT 900
consensus_13316#1 TCATCCACACCCTCTCCTCTTCTTGAAAATATCCTGGACCGTCAAACTTTTTGTTCCTTT 449
************************************************************
consensus_13316#0 CTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAACATAAGTAA 960
consensus_13316#1 CTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACAAAAAAAAAAA 509
*************************************************** * ** **
consensus_13316#0 CTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAAC 1020
consensus_13316#1 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 530
* * ** **
consensus_13316#0 TACATTAATTGTTTATGGAAAAGGAAATTTCCTTCCCTAGCAAAAAAA 1068
consensus_13316#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||