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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1081 fasta sequence
[ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCCGCCGCCGTGGAGCTCTACATCCGGGAGGGGCGCCGGCCGCTGCTGCCGTCCGCCGACCCCGCCGCCTTCGGACTCCACTTCTCCCAGTTCAGCTTGCAGAGTTTGAACCCGGAGGAGAAGCTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCGCCGTGGCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCAACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGCTGCTGTAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATGTATCACCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTTTCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTACAGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATTTGGATGTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATACTGCCCGCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTTTCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCCTAATAA]
[+] EMBL AK058851 [ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCCGCCGCCGTGGAGCTCTACATCCGGGAGGGGCGCCGGCCGCTGCTGCCGTCCGCCGACCCCGCCGCCTTCGGACTCCACTTCTCCCAGTTCAGCTTGCAGAGTTTGAACCCGGAGGAGAAGCTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCGCCGTGGCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCAACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGCTGCTGTAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATGTATCACCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTTTCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTACAGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATTTGGATGTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATACTGCCCGCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTTTCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCCTAATAA]
consensusID : consensus_1351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCCCCCGCCGTGGAGGTCTACCTCCCGGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAACCCCCCCGCCTCCGGATCCACTTCTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGGACGCCTCCCTTCCACTGGCTATAATTTTAACACCTTCCTTGCCGGGGCCCGCGGACGGCAAGAGCTCCTCCCCTGATCCGGAAAGGCTGTCGGGTTTTTTTGTACGAGAGGTTGTACCCGGAGGAGAACTCCTGGAGCTCGCCGCCAGGGCTTC]
[+] EMBL CA754079 [CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCCCCCGCCGTGGAGGTCTACCTCCCGGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAACCCCCCCGCCTCCGGATCCACTTCTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGGACGCCTCCCTTCCACTGGCTATAATTTTAACACCTTCCTTGCCGGGGCCCGCGGACGGCAAGAGCTCCTCCCCTGATCCGGAAAGGCTGTCGGGTTTTTTTGTACGAGAGGTTGTACCCGGAGGAGAACTCCTGGAGCTCGCCGCCAGGGCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1351#0 ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACG 60
consensus_1351#1 -----------------------CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACG 37
*************************************
consensus_1351#0 ATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGG 120
consensus_1351#1 ATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGG 97
************************************************************
consensus_1351#0 TCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGG 180
consensus_1351#1 TCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGG 157
************************************************************
consensus_1351#0 CCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGC 240
consensus_1351#1 CCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGC 217
************************************************************
consensus_1351#0 GGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAG 300
consensus_1351#1 GGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAG 277
************************************************************
consensus_1351#0 AGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCC 360
consensus_1351#1 AGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCC 337
************************************************ ***********
consensus_1351#0 GCCGCCGTGGAGCTCTACATCC-GGGAGGGGCGCC-GGCCGCTGCTGCCGT-CCGCCGA- 416
consensus_1351#1 CCCGCCGTGGAGGTCTACCTCCCGGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAA 397
*********** ***** *** **** *** *** *********** *** *******
consensus_1351#0 CCCCGCCGCCTTCGGACTCCACTTCTCCC-AGTTCAGCTTGCAGAGTTTGAACCCGGAGG 475
consensus_1351#1 CCCCCCCGCCTCCGGA-TCCACTTCTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGG 456
**** ****** **** ************ ** *** ******** * * * **
consensus_1351#0 AGAAGCTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCG 535
consensus_1351#1 ACGCCTCCCTTCCACT-GGCTATAATTTTAACACCTTCCTTGCCGGGGCC--CGCGGACG 513
* * * ** *** * * * ** ** **** *** * **
consensus_1351#0 CCGTGGCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCA 595
consensus_1351#1 GCAAGAGCTCC-TCCCCTGATCCGGAAAGGCTGTCGGGTTTTTTTGT-ACGAGAGGTTGT 571
* * ** ** * * ** * * * * *** ** * * * ** *
consensus_1351#0 ACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGC 655
consensus_1351#1 ACCCGGAGGAGAACTCCTGGAGCTCGCCGCCAGGGCTTC--------------------- 610
** * * **** ** * * * * *** ****
consensus_1351#0 TGCTGTAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATG 715
consensus_1351#1 ------------------------------------------------------------
consensus_1351#0 TATCACCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTT 775
consensus_1351#1 ------------------------------------------------------------
consensus_1351#0 TCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTAC 835
consensus_1351#1 ------------------------------------------------------------
consensus_1351#0 AGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATT 895
consensus_1351#1 ------------------------------------------------------------
consensus_1351#0 TGGATGTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATAC 955
consensus_1351#1 ------------------------------------------------------------
consensus_1351#0 TGCCCGCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTT 1015
consensus_1351#1 ------------------------------------------------------------
consensus_1351#0 TCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCC 1075
consensus_1351#1 ------------------------------------------------------------
consensus_1351#0 TAATAA 1081
consensus_1351#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||