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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1264 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGAAAATCCAGCCCTCTCCCGACTCCCGAGCGAAGCAGCGAGAGGCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGCTGCTCTTCTCT-CCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCCCAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTCGACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGGCCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCTCGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK109342 [TTCCTCGAGCACTGTTGGCCTACTGGAAAATCCAGCCCTCTCCCGACTCCCGAGCGAAGCAGCGAGAGGCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGCTGCTCTTCTCT CCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCCCAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTCGACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGGCCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCTCGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK071226 [ ACTCCCGAGCGAAGCAGCGAGAGGCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGCTGCTCTTCTCT CCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCCCAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTCGACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGGCCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCTCGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACT GGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGT ]
[+] EMBL AK068647 [ GCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGCTGCTCTTCTCTCCCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCCCAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTCGACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGGCCCCGCTTCGGGAGGCGACGGTTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCTCGTGTCTTCGTTCGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAGAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGT ]
[+] EMBL CA999933 [ TCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGCGTTGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCGGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACT GGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAAaaaaaaaaa ]
consensusID : consensus_13630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1107 fasta sequence
[TATCCCTTGATGCACGGCAACGGATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGGGAATTCTTCAAATACTATCCAGTACTAAAAACTGTATAGATTTGCAATGTGCTAGGTTTATACCGATTCAATTGAATTCCGTGGGGAGTTACGATCACAATGTTACCATTTGGCGCAAACTGTCATGTTACGAAACTATCAGGAGGGATCACACCAGTTAAACTGTAACGGTGCAATAAATATATCAGCATAGGAATGTACTAATGTGCATCATTTGACTGGGGCAAATTGGGCCGCCAAATTCACGTTTTCACGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCA-TACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAAC-CAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGC-AATTCGTT-TCCTCC-TTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATAT-TTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTCAAATTTTCTATCTGATTATTCAAATACCAAAAGTATCTTTTAAATGCATATTAAGACAATGTAGTCTTTTTTTTGAACGAAAATTGGGACAATGTAGTCGGATCTTCAAAACGACAACAAAATCATTAGCAGGACAGCAAAAAAAAAAAAAAAGGGGGCAGCTTGATTCAGCAAAAAATGGTACTCCTATAATT]
[+] EMBL CB682587 [TATCCCTTGATGCACGGCAACGGATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGGGAATTCTTCAAATACTATCCAGTACTAAAAACTGTATAGATTTGCAATGTGCTAGGTTTATACCGATTCAATTGAATTCCGTGGGGAGTTACGATCACAATGTTACCATTTGGCGCAAACTGTCATGTTACGAAACTATCAGGAGGGATCACACCAGTTAAACTGTAACGGTGCAATAAATATATCAGCATAGGAATGTACTAATGTGCATCATTTGACTGGGGCAAATTGGGCCGCCAAATTCACGTTTTCACGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGGGACGACAGGGCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCACATGTCGATGGAGAACCA TACTGGTACTATGAGTATCTAGATCGGAAATCTCCTACACAATCTGCACCAGAAC CAAATCTGGTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCAT ]
[-] EMBL CB682588 [ AACTATCAGTAGGGATCACACCAGTTAAACTGTAACGGTGCAATAAATATATCAGCATAGTAATGTACTAATGTGCATCATTTGACTGGTGCAGATTGGGCCGCCAAATTCACGTTTTC CGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCA TACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAAC CAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGC AATTCGTT TCCTCC TTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATAT TTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTCAAATTTTCTATCTGATTATTCAAATACCAAAAGTATCTTTTAAAAGGATATTAAGACAATGTAGTCT ]
[+] EMBL AA754382 [ TGCTGATTGGATTTTRGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCA TACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAAC CAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGKTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAG AAACAGTGGCATCCTTTCACCTYCTVCCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCA ]
[+] EMBL OS38095 [ TGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATTACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACTCAAATCTGCTTCGCCATAACGTAGCCTGCAGTGCAGAACGAGATGGGTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCT CTA CCCCTTCAGAAAATTATGTTCC CCATACCAGGATCCATGGAGATTTTGGGGACAAT C AATT GGT TCCCCC T ]
[-] EMBL CF326558 [ TACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGC AATTCGTT TCCTCC TTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATAT TTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTCAAATTTTCTATCTGATTATTCAAATACCAAAAGTATCTTTTAAATGCATATTAAGACAATGTAGTCTTTTTTTTGAACGAAAATTGGGACAATGTAGTCGGATCTTCAAAACGACAACAAAATCATTAGCAGGACAGCAAAAAAAAAAAAAAAGGGGGCAGCTTGATTCAGCAAAAAATGGTACTCCTATAATT]
[+] EMBL BI811087 [ ATACCAGGATCCATGGAGATTTTGGTGACATTGCAAATTCGTTGTCCTCCGTGTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATGTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTAC AAATGAAGCCTAGTTCAGTTGTGC AAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTC AATTTTCTATCTGATTATTCAAATACCCAAAGTATCTTTTAAATGCAaaa ]
consensusID : consensus_13630#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CGTTGTCGTCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGAGGCGCACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAAGGAAGCCTAGTTCAGTTGTGCCNNNNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL BE040446 [CGTTGTCGTCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGAGGCGCACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTACAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAAGGAAGCCTAGTTCAGTTGTGCCNNNNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensusID : consensus_13630#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[CGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGANCCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGNTNNNTACTTGTACTCCTTGAATGCTNNNNNACTNNNNNAGCANNNNNNNNCTATGGGGCNNNCNTTACNNNNNNNNNNNGCATCCTNNNNNNN]
[+] EMBL CF197338 [CGTGCTCGTCCTCCCGGTTTCAGATTCGCATGCTGTTGCCGAGATGGATGAAGATGTGAAAATGGCTACGCTAGTTGACCCGATCAATGCATATTCTTTTCTTTACCCAGTTGAATTGCCAGGAAAGAAATTCACATTCAAATGGGTAGAATCCAGAAAACCAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTCACGTTTTCCGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGATTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTGTCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAGTTCGGAAATCTCCTACACAATCTGCACCAGANCCAAATCTGTTTCGCCATAACGTAGCCTGCACTGCTGAACGAGNTNNNTACTTGTACTCCTTGAATGCTNNNNNACTNNNNNAGCANNNNNNNNCTATGGGGCNNNCNTTACNNNNNNNNNNNGCATCCTNNNNNNN]
consensusID : consensus_13630#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 105 fasta sequence
[CTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTAGCATCCTTTCACCTCCTACCGCCTACAGTTAAATAGTGTTTCATCCATACCAGGATT]
[+] EMBL OS38157 [CTCAGCAAGCAGTGGGAATCTATGGGGCCTTCTTTACAGAAAACAGTAGCATCCTTTCACCTCCTACCGCCTACAGTTAAATAGTGTTTCATCCATACCAGGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13630#1 ------------------------------------------------------------
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 TTCCTCGAGCACTGTTGGCCTACTGGAAAATCCAGCCCTCTCCCGACTCCCGAGCGAAGC 60
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 ------------------------------------------------------------
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 AGCGAGAGGCTAGAGGCAAGGAAGGAGGCAGCAGCAGAGCAGAGCAGCCATGGCGGCCGC 120
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 ------------------------------------------------------------
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 TGCTCTTCTCTCCCCTCCTCCCTCTCCCTCTCCCTCCCCCACCCCGTCCTCGCTCCACCC 180
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 ------------------------------------------------------------
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 CAGGCAAGCCCTCCGCTTCGCGGTTGGCACAGGAGGAGGAGGGCGCGCGCGCGCCACGTC 240
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 ------------------------------------------------------------
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 GACGGGGACGAGACGCCGCGCGGCGCTCGTCCCGTGCTCCTCCAGCGTGAGCGCGCGCGG 300
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 -----------------------------------------TATCCCTTGATGCACGGCA 19
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 CCCCGCTTCGGGAGGCGACGGGTTGGCCCTGGAGAGGAGGCGCCTGCTGCTGTCCGGCCT 360
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 ACGGATTGTATCGGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGGGAAT 79
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 CGTGTCTTCGTTCGTGCTCGTCCTCCCGGT--TTCAGATTCGCATGCTGTTGCCGAGATG 418
consensus_13630#3 ------------CGTGCTCGTCCTCCCGGT--TTCAGATTCGCATGCTGTTGCCGAGATG 46
consensus_13630#1 TCTTCAAATACTATCCAGTACTAAAAACTGTATAGATTTGCAATGTGCTAGGTTTATACC 139
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 GATGAAGATGTGA--AAATGGCTACGCTAGTTGACCCGATCAATGCA-TATTCTTTTCTT 475
consensus_13630#3 GATGAAGATGTGA--AAATGGCTACGCTAGTTGACCCGATCAATGCA-TATTCTTTTCTT 103
consensus_13630#1 GATTCAATTGAATTCCGTGGGGAGTTACGATCACAATGTTACCATTTGGCGCAAACTGTC 199
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 TACCCAGTTGAATTGCCAGGAAAGAAAT--TCACATTCAAATGGGTAGAATCCAGAAAAC 533
consensus_13630#3 TACCCAGTTGAATTGCCAGGAAAGAAAT--TCACATTCAAATGGGTAGAATCCAGAAAAC 161
consensus_13630#1 ATGTTACGAAACTATCAGGAGGGATCACACCAGTTAAACTGTAACGGTGCAATAAATATA 259
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 CAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATT--GTATC 591
consensus_13630#3 CAGAACGATATTCCTCTGCTGCACCACTATCTCCTGATGCACGGCAACGTATT--GTATC 219
consensus_13630#1 TCAGCATAGGAATGTACTAATGTGCATCATTTGACTGGGGCAAATTGGGCCGCCAAATTC 319
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------CGTTGTCGTCTCAGTCTCGATTGGGCCGCCAAATTC 36
consensus_13630#0 GGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTC 651
consensus_13630#3 GGAGCGAGTTGACATGATACATAACGTTGTCATCTCAGTCTCGATTGGGCCGCCAAATTC 279
consensus_13630#1 ACGTTTTCACGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGA 379
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ACGTTTTC-CGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGA 95
consensus_13630#0 ACGTTTTC-CGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGA 710
consensus_13630#3 ACGTTTTC-CGCCTTCCAAGGACAAGAGCAAGTGGGATCCAAAAGATGTTGCTGATTGGA 338
consensus_13630#1 TTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTG 439
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 TTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTG 155
consensus_13630#0 TTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTG 770
consensus_13630#3 TTTTGGCTGAAAAATCTTCACTGAAGGTGACGACAGGCCAACGCATGACAGAGAGTTCTG 398
consensus_13630#1 TCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAG 499
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 TCCTTGAGGCGCACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAG 215
consensus_13630#0 TCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAG 830
consensus_13630#3 TCCTTGATGCACACTCTTCAGATGTCGATGGAGAACCATACTGGTACTATGAGTATCTAG 458
consensus_13630#1 TTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCT 559
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 TTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCT 275
consensus_13630#0 TTCGGAAATCTCCTACACAATCTGCACCAGAACCAAATCTGTTTCGCCATAACGTAGCCT 890
consensus_13630#3 TTCGGAAATCTCCTACACAATCTGCACCAGANCCAAATCTGTTTCGCCATAACGTAGCCT 518
consensus_13630#1 GCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGT 619
consensus_13630#4 -----------------------------------------------CTCAGCAAGCAGT 13
consensus_13630#2 GCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGT 335
consensus_13630#0 GCACTGCTGAACGAGATGGTTACTTGTACTCCTTGAATGCTTCAACACTCAGCAAGCAGT 950
consensus_13630#3 GCACTGCTGAACGAGNTNNNTACTTGTACTCCTTGAATGCTNNNNNACTNNNNNAGCANN 578
** ****
consensus_13630#1 GGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTA 679
consensus_13630#4 GGGAATCTATGGGGCCTTCTTTACAGAAAACAGTAGCATCCTTTCACCTCCTACCGCCTA 73
consensus_13630#2 GGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTA 395
consensus_13630#0 GGGAATCTATGGGGCCTTCTTTACAGAAAACAGTGGCATCCTTTCACCTCCTACCCCCTA 1010
consensus_13630#3 NNNNNNCTATGGGGCNNNCNTTACNNNNNNNNNNNGCATCCTNNNNNNN----------- 627
********* * **** *******
consensus_13630#1 CAGA-AAATTATGTTCC-TCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTC 737
consensus_13630#4 CAGTTAAATAGTGTTTCATCCATACCAGGATT---------------------------- 105
consensus_13630#2 CAGA-AAATTATGTTCC-TCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTC 453
consensus_13630#0 CAGAAAATTATGTTCCTCCATACCAGGATCCATGGAGATTTTGGTGACATTGCAATTCGT 1070
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 GTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACAT 797
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 GTTTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACAT 513
consensus_13630#0 TTCCTCCTTTTACTGTTTCACGTTTTAGGTGATCTTGGAACATCAGGTTTTAGAACATAT 1130
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 ATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCT 857
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ATTTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAAGGAAGCCT 573
consensus_13630#0 TTTCCTGTAATGGATGCTTCAGTGATGTCTGCACTTTCAGTTCTACAAAATGAAGCCTAG 1190
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 AGTTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCATCTCAAAT 917
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 AGTTCAGTTGTGCCNNNNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---- 629
consensus_13630#0 TTCAGTTGTGCAAAATGAAGCCTAGGGACATAGTTTGCTTTTGGCAGTCAAAAAAAAAAA 1250
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 TTTCTATCTGATTATTCAAATACCAAAAGTATCTTTTAAATGCATATTAAGACAATGTAG 977
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 AAAAAAGGCCACAT---------------------------------------------- 1264
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 TCTTTTTTTTGAACGAAAATTGGGACAATGTAGTCGGATCTTCAAAACGACAACAAAATC 1037
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 ------------------------------------------------------------
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 ATTAGCAGGACAGCAAAAAAAAAAAAAAAGGGGGCAGCTTGATTCAGCAAAAAATGGTAC 1097
consensus_13630#4 ------------------------------------------------------------
consensus_13630#2 ------------------------------------------------------------
consensus_13630#0 ------------------------------------------------------------
consensus_13630#3 ------------------------------------------------------------
consensus_13630#1 TCCTATAATT 1107
consensus_13630#4 ----------
consensus_13630#2 ----------
consensus_13630#0 ----------
consensus_13630#3 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||