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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1070 fasta sequence
[CACACCACACCAACATCGAGCGCGTCGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA-NC-TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGCGTCG-ACGACGATGAGGCCACGCCCGCGTCGG-TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG-TTCGCGCCGCC-GGTGTCGGCGGCCG-AGCTGGCGCCGGCCGACGACA-TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCGCCCGGCGACGCCTCCACGGC-GGCGCCCTCCGCC-GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC-GCG-ACAGG-TTCCCCAAGAGCGCGTCCACCGG-CGGAGAGTCGTCGTCG-TCATCGCGGCGCTGGCGCCTGCGCGACCTCGTCGGCGCCGGCGGCCGCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGACGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACCGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAAAAAAAAAAAAAA]
[+] EMBL AK108331 [CACACCACACCAACATCGAGCGCGTCGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCAGCC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGCGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTAACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TCCGCGCCGCC GGTGTCGGCGGCCG AGCTGGCGCCGGCCGACGACA TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCACCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC GCG ACAGG TTCCCCAAGAGCGCGTCCACCGG CGGAGAGTCGTCGTCG TCATCGCGGCGCTGGCGCCTGCGCGACCTCGTCGGCGCCGGCGGCCGCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGACGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACCGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAAAAAAAAAAAAAA]
[+] EMBL OSC30781 [ CATCGAGCGCGTCGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCNATGGNGCAGTCGNCGCGCA GC TCCACANGCTGATCAGCTTCGGTNGNGGCGCCGACGGNGTCG ACGACGATGAGGCC ]
[+] EMBL AU164809 [ AGCGCGTCGATTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCTACCCAGCGCCGCCGCNGCAGCCGCGATGGCGNAGTCGCCGCGCA GCNTCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGNGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TTCGCGCCGCC GGTGTCGGCGGCCG AGTTGGCGCCGGCCGACGANN TCTTCGCGCACGGCCGCATCGTGCCGGNGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCGCCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC GCG ACAGG TTCCCCAAGAGCGCGTCCACCGG CGGAGAGTCGTCGTCG TCATCGCGGCG TGGCGCCTGC ]
[+] EMBL AU164808 [ CGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA NC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGCGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TTCGCGCCGCC GGNGTCGGCGGCCG AGCTGGCGCCGGCCGACGACA TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCGCCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACANCTACTGCGgc ]
[+] EMBL AU164758 [ CGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGANANCGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA NC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGG NTCGAACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACNTCGACTTCGCG TTCGC CCGCC GTTATCGG GGCCGAAGCTGGCGCCGGCCGACGAAA TCTTCGCGCANGGCCGCATCGTGCCGGCGTAACCGGTGTTCGACCGCAGC ]
[+] EMBL AU070155 [ CGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA NC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGGCGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGANCTCGACTT ]
[+] EMBL AU163484 [ CGAGTCGAATCCAATCCACTCCACTCCACCCCGCGATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCAGCCGCGATGGCGCAGTCGCCGCGCA NC TCCACACGCTGATCAGCTTCGGCCGCGGCGCCGACGG GTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TTCGCGCCGCCGGGNGTCGGCGGCCG AGCTGGCGCCGGCCGACGACA TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACNTCTCGCCCGGCGACGCCTCCACGGCGGGCGCCCTCCGCCGGACACCTACTGCGCGTGGACGCCGNGCTTCGCGCCGGGCTCGCCCGGCCNGCGAACAGGTTTCCCCAAGAGCGNGTCCAACGGNGGGANATTCGTCGTCGTTCATCGCGGCGCTGGCGGCTGaggc ]
[+] EMBL AU163485 [ GGCCGCGGCGCCGACGGCGTCG ACGACGATGAGGCCACGCCCGCGTCGG TCGACGTTGGTGACGCGGAGGGCGCCGGGCTCGACCTCGACTTCGCG TTCGCGCCGCC GGTGTCGGCGGCCG AG TGGCGCCGGCCGACGACN TCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCCTCCTCGACCTCTCGCCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC GCG ACAGG TTCCCCAAGAGCGCGTCCACCGG CGGAGAGTCGTCGTCG TCATCGCGGCG TGGCGCCTGCGCGACCTCGTCGGC ]
[+] EMBL AU065288 [ GCTACGCCCGCGTCGGTTCGANGTTGGTGACGCGGNGGGCGCCGGGCTCGACCTCGACTTCGNGTTTCGCGCCGCC GGTGTCGGCGGCCG AGCTGGCGCCGGCCGACGANANTCTTCGCGCACGGCCGCATCGTGCCGGNGTACCNGGTGTTCGACCGCAGCCTCNTCGACNTCTCGCCCGGCGACGCCTCCACGGC GGCGCCCTCCGCC GACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCC GCG ACAGG TTCCCCAAGAGCGCGTCCACCGG CGGAGAGTCGTCGTCG TCATCGCGGCGGTGGCGCCTGCGCGACCT ]
consensusID : consensus_13863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 537 fasta sequence
[GGGAATAGCTG-GGC--GCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC-CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAA-AAAAAAAAAAAAAC]
[+] EMBL CB966679 [GGGAAAAGCTG GGC GCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAA AAAAAAAAAAAAAC]
[+] EMBL CB964810 [GGGAATAGCTGCGGC GCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAG ]
[+] EMBL BU673230 [ AATAGCTC GGCCTTATCCCGCAGCGACGGCAAGGACAAGTTCG CTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATCAATGGAAACAGAGAGGAATGACATTTGAGAGATGATTTTGTCTAAAAAACAAAAAAAAAAAAAC]
[+] EMBL CB964877 [ CGCAGCGACGGCAAGGACAAGTTCGC TCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCAC CGAGATGGACATGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAGAGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAA GAAA ]
[+] EMBL CB966817 [ GGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACNCGAGATGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13863#0 CACACCACACCAACATCGAGCGCGTCGAGTCGAATCCAATCCACTCCACTCCACCCCGCG 60
consensus_13863#1 ------------------------------------------------------------
consensus_13863#0 ATCTCCTCTCCTCTCGTCTCCGGCGAAGACGACGTGATGCCACCCAGCGCCGCCGCCGCA 120
consensus_13863#1 ------------------------------------------------------------
consensus_13863#0 GCCGCGATGGCGCAGTCGCCGCGCANCTCCACACGCTGATCAGCTTCGGCCGCGGCGCCG 180
consensus_13863#1 ------------------------------------------------------------
consensus_13863#0 ACGGCGTCGACGACGATGAGGCCACGCCCGCGTCGGTCGACGTTGGTGACGCGGAGGGCG 240
consensus_13863#1 ------------------------------------------------------------
consensus_13863#0 CCGGGCTCGACCTCGACTTCGCGTTCGCGCCGCCGGTGTCGGCGGCCGAGCTGGCGCCGG 300
consensus_13863#1 ------------------------------------------------------------
consensus_13863#0 CCGACGACATCTTCGCGCACGGCCGCATCGTGCCGGCGTACCCGGTGTTCGACCGCAGCC 360
consensus_13863#1 ------------------------------------------------------------
consensus_13863#0 TCCTCGACCTCTCGCCCGGCGACGCCTCCACGGCGGCGCCCTCCGCCGACACCTACTGCG 420
consensus_13863#1 ------------------------------------------------------------
consensus_13863#0 CGTGGACGCCGCGCTCGGCGCCGGGCTCGCCCGGCCGCGACAGGTTCCCCAAGAGCGCGT 480
consensus_13863#1 ------------------------------------------------------------
consensus_13863#0 CCACCGGCGGAGAGTCGTCGTCGTCATCGCGGCGCTGGCGCCTGCGCGACCTCGTCGGCG 540
consensus_13863#1 -------------------------------------------------------GGGAA 5
**
consensus_13863#0 CCGGCGGCCGCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCG 600
consensus_13863#1 TAGCTGGGCGCTCCCGCAGCGACGGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCG 65
* ** ****************************************************
consensus_13863#0 CCGCGACGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGAAGA 660
consensus_13863#1 CCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCAACAACCACAGCAGCAGA 125
***** ************************************************** ***
consensus_13863#0 AGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACCGAGATGGACA 720
consensus_13863#1 AGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACCGAGATGGACA 185
************************************************************
consensus_13863#0 TGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGC 780
consensus_13863#1 TGGCCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGC 245
************************************************************
consensus_13863#0 AGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGT 840
consensus_13863#1 AGCAAGCCTCGTACCTGACGTACCGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGT 305
************************************************************
consensus_13863#0 CGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTAC 900
consensus_13863#1 CGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAACCAAACCAACTGATTAC 365
************************************************************
consensus_13863#0 TAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGA 960
consensus_13863#1 TAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGA 425
************************************************************
consensus_13863#0 AATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAG 1020
consensus_13863#1 AATTCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTACATAAATGGAAAAAG 485
************************************************************
consensus_13863#0 AGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAAAAAAAAAAAAAA-- 1070
consensus_13863#1 AGAGGAATGAAATTTGAGAGATGATTTTGTCTAAAAAAAAAAAAAAAAAAAC 537
**************************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||