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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2067 fasta sequence
[ATGCGCCCGGTCCACCGCGCCTCGCCTCGCTGACCCACGGGGGCCACCTGCTGCTGGTGGTGGTGGACGGACGGAGTTGTCCGCGACGGTCTCCCACTTTCCGCCTCTTCCCCACCACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCT-GAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCA-CGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGCGGCGCAGTT-GGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGGCATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCTCAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAACGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAACAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGCGGCGCGCGCCGGCCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCTCAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCAAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAAAAAAAA]
[+] EMBL AK103673 [ATGCGCCCGGTCCACCGCGCCTCGCCTCGCTGACCCACGGGGGCCACCTGCTGCTGGTGGTGGTGGACGGACGGAGTTGTCCGCGACGGTCTCCCACTTTCCGCCTCTTCCCCACCACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCT GAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCA CGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGCGGCGCAGTT GGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGGCATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCTCAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAACGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAACAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGCGGCGCGCGCCGGCCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCTCAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCAAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAG ]
[+] EMBL OSS12372A [ CACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCT ]
[+] EMBL OSS12652A [ CACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCTGGAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGGANGGAATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTNCCCTTTTTGATCTAGCAAGTCGTCG ]
[+] EMBL AK068834 [ GATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCT GAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCA CGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGCGGCGCAGTT GGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGGCATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCTCAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAACGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAACAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGCGGCGCGCGCCGGCCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCTCAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCAAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCGTGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGT ]
[+] EMBL CB636491 [ ATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCT GAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCA CGCATCAACAGTGGAGGG ]
[+] EMBL CA755957 [ CCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGCGGCGCAGTTGGGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGGCATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCTCAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAACGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAACAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGNGGNGCGCGCCGGCCCCGCCGCCGCCGGT ]
[+] EMBL CB666478 [ CGGCGCGCGCCGGCCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCTCAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCTAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAATTAGCTGTA ]
[-] EMBL CB666479 [ ATAGCCCTGCGAGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGCTGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCTAACGGCTCGATTCAAGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGATGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAAGGTATGGGACATGTCCAAGAAGAGGAAGAACCCGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTTCAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACCCCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCCCCAAATGTATGTCTTTGATTGATCCGACTTCCCCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTGGGCATTCAGTGGGGGATTATAGAAaaaaaaaaa ]
[+] EMBL CA998847 [ AGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAACAGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGAGATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTTTCGCAAAGAGATTGAAGGAGTGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAAAAAAAA]
[-] EMBL CB636492 [ AGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGGGTGTCCCCA TCAGTGGGGGATTATAAAAG ]
[-] EMBL D43048 [ CCAGAAAGCAGGCTTGTAGTTTTTGGTGNNCTTGTGCACCAAATGTATGNCTTTGAATGATCCGACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGG ]
consensusID : consensus_13918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[CCNNTTCCCGGGGGGGGTTNAAANGGGGGAAAAATTTCCGGGGGGGGNGGGGAACATATGGGTGTTATTTNGCNNCCGGGTAAAATTTTNTTTCGGTTTATTTGGGGGGATTGGGGGGGNAAAATTTNAAAAAAGGGAAAGGTNGGCCCNNGTTAACCCCCNAGGTTGGAAANTANNCCTTCATAANGGGGAAAAAAGGGGGGTTTCCCCNGNGGGGGGGCNTTTTAAGAAAAAGNGAAATCCCCNGGCGNGGGGATTNGGCCACGGGGGGAGGGNNGCCCCNCCAAANAATGGTGGGTAGTTTTTTTTTAAACAGNGGAAGNGGAAAACCATNCCNAAGGAAAGGAGGAAATGGTTCAGGGGTGATTGAAACACCAACCGTTTTGTCCAGGAATCCAGAAAGCAGGTTGTAGTTTTTGGTGTTTTTGTGCACCAAATGTATGTTTTTGATTGATCCGAATTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAAATAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATTGTATGTATCATTTTACTTTTTTTAGATAATGGATTTTCATTAA]
[-] EMBL BE229244 [CCNNTTCCCGGGGGGGGTTNAAANGGGGGAAAAATTTCCGGGGGGGGNGGGGAACATATGGGTGTTATTTNGCNNCCGGGTAAAATTTTNTTTCGGTTTATTTGGGGGGATTGGGGGGGNAAAATTTNAAAAAAGGGAAAGGTNGGCCCNNGTTAACCCCCNAGGTTGGAAANTANNCCTTCATAANGGGGAAAAAAGGGGGGTTTCCCCNGNGGGGGGGCNTTTTAAGAAAAAGNGAAATCCCCNGGCGNGGGGATTNGGCCACGGGGGGAGGGNNGCCCCNCCAAANAATGGTGGGTAGTTTTTTTTTAAACAGNGGAAGNGGAAAACCATNCCNAAGGAAAGGAGGAAATGGTTCAGGGGTGATTGAAACACCAACCGTTTTGTCCAGGAATCCAGAAAGCAGGTTGTAGTTTTTGGTGTTTTTGTGCACCAAATGTATGTTTTTGATTGATCCGAATTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAAATAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATTGTATGTATCATTTTACTTTTTTTAGATAATGGATTTTCATTAA]
consensusID : consensus_13918#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence
[ATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTNTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCNCCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAATCCGGCCAAAAAAAAAAAAA]
[+] EMBL AU174003 [ATATCGCGAAGAGCATCGAGTTGCTGGCAAGCTCATTNTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGCTGAAGTGGACAACCATGCCAAGAAAGGAGAAAATGGTTCAGGGTGATTGAAACACCAACCGATCGTCCAGAATCCAGAAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCGACTTCNCCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAATCCGGCCAAAAAAAAAAAAA]
[+] EMBL AU096186 [ aCCATGTACGATGAGATAGTTAGCTGTAAAANTAANATGCAATAAATGATATGATTGTCCCCATTCAGTGGGGGATTATAGAAGCANTTTTAGAATNAGTAACTAGCCTGAAGAAAGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTACTTTTTTTAGATAATGGATTTTCATTAATCCGGCCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13918#0 ATGCGCCCGGTCCACCGCGCCTCGCCTCGCTGACCCACGGGGGCCACCTGCTGCTGGTGG 60
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 TGGTGGACGGACGGAGTTGTCCGCGACGGTCTCCCACTTTCCGCCTCTTCCCCACCACCA 120
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 TCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCT 180
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 TCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCT 240
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTG 300
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCT 360
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 GCTGCTGCTGAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCG 420
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 ATTCCGCCGGACGCACGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTT 480
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 GATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAA 540
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 GGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGC 600
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 GGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCC 660
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTG 720
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGC 780
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 GGCGCAGTTGGCGGCGGCGGCGGCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGG 840
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAACCGCGCCAAGCT 900
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CAAGTGGAGCGACTGGGTCGACATTGCCCACGAGGTGTCCGCCCACTGCGCCATGGAGAA 960
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CGCCGCCGCCACGGGGAAGCCCGGGAGCAGCACGGCCAAGACGCCCAACCAGTGCAAGAA 1020
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CAAGATCGAGTCCATGAAGAAGCGGTACAGGGCGGAGTCCGCCGCGGCGGCGCGCGCCGG 1080
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CCCCGCCGCCGCCGGTGCTGGCCCGTCGTGGCGGTTCTTCGCCCGCATGGACGGCTTGCT 1140
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 CAAAGGCCCCGCCGGCTCCGGCCAGCCGCAGGCGGAGTTGAGCAACAGCATAGACCTGCG 1200
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 AGCTCCTCCTCCTGCAAAGGTTGAGGTCGATGTCGATGCAGATTTCGTCAGTCAGTTAGC 1260
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 TGATGCAGGGCCGGGTGCACTTTCTGAATTGGTGAGTGCATATGCAAACGGCTCGATTCA 1320
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 AGAGAAATTGGACAAGGTTGAGAACAGTGGGCATGTTGAGGGGAGAGCTGCAGAGAGTGA 1380
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------------------------------------------------------------
consensus_13918#0 TGTCAATGTGAGCTCTCCGAGGATCAAGGAGGCGAACGAGGATGCCGAGGAGGTGGACAA 1440
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 ------CCNNTTCCCGGGGGGGGTTNAAANGGGGGAAAAATTTCCGGGGGGGGNGGGGAA 54
consensus_13918#0 GGTATGGGACATGTCCAAGAAGAGGAAGAACACGGAGTTTGATATCGCGAAGAGCATCGA 1500
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 CATATGGGTGTTATTTNGCNNCCGGGTAAAATTTTNTTTCGGTTTATTTGGGGGGATTGG 114
consensus_13918#0 GTTGCTGGCAAGCTCATTCTTGAAGATTGAGCGCGCAAGAATGGACCTGTACAGGGAAAC 1560
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 GGGG---GNAAA---ATTTNAAAAAAGGGA------AAGGTNGGCCCNNGTTAACCCCCN 162
consensus_13918#0 AGAGAGGATGAGGGTTGAGGCTGAGATTAAGAAGGGTGAGATGGAGCTCAAGAGGACAGA 1620
consensus_13918#2 ------------------------------------------------------------
consensus_13918#1 AGGTTGGAAANTANNCCTTCATAANGGGGAAAAAAGGGGGGTTTCCCCNGNGGGGGGGCN 222
consensus_13918#0 GATTATGGCAAAGACGCACTTGCAGATCGCTAAGCTTT--TCGCAAAGAGATTGAAGGAG 1678
consensus_13918#2 --ATATCGCGAAGA-GCATCGAGTTGCTGGCAAGCTCA--TTNTTGA-AGATTGA----G 50
consensus_13918#1 TTTTAAGAAAAAGN-GAAATCCCCNGGCGNGGGGATTNGGCCACGGGGGGAGGGNNGCCC 281
** *** * * * * * ** *
consensus_13918#0 TGCAGCAGCAAGACTGGTGGTAGCTCATCTGTAACAGCTGAAGTGGACAACCATGCCAA- 1737
consensus_13918#2 CGC----GCAAGAATGG---------ACCTGTA-CAGCTGAAGTGGACAACCATGCCAA- 95
consensus_13918#1 CNCCAAANAATGGTGGGTAGT--TTTTTTTTAAACAGNGGAAGNGGAAAACCATNCCNAA 339
* * * ** * * *** **** *** ****** ** *
consensus_13918#0 -GAAAGGAGAAAATGGTTCAGGG-TGATTGAAACACCAACCGATC-GTCCAG-AATCCAG 1793
consensus_13918#2 -GAAAGGAGAAAATGGTTCAGGG-TGATTGAAACACCAACCGATC-GTCCAG-AATCCAG 151
consensus_13918#1 GGAAAGGAGGAAATGGTTCAGGGGTGATTGAAACACCAACCGTTTTGTCCAGGAATCCAG 399
******** ************* ****************** * ****** *******
consensus_13918#0 AAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCG 1853
consensus_13918#2 AAAGCAGGCTTGTAGTTTTTGGTGTTCTTGTGCACCAAATGTATGTCTTTGATTGATCCG 211
consensus_13918#1 AAAGCAGG-TTGTAGTTTTTGGTGTTTTTGTGCACCAAATGTATGTTTTTGATTGATCCG 458
******** ***************** ******************* *************
consensus_13918#0 ACTTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGAT 1913
consensus_13918#2 ACTTCNCCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGAT 271
consensus_13918#1 AATTCACCATGTACGAAGAGATAGTTAGCTGTAAAAGTAAAATGCAATAAATGATATGAT 518
* *** ******************************************************
consensus_13918#0 TGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAA 1973
consensus_13918#2 TGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAACTAGCCTGAAGAA 331
consensus_13918#1 TGTCCCCATTCAGTGGGGGATTATAGAAGCAGTTTTAGAATCAGTAAATAGCCTGAAGAA 578
*********************************************** ************
consensus_13918#0 AGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTA 2033
consensus_13918#2 AGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATCGTATGTATCATTCTA 391
consensus_13918#1 AGTTGTTGAGTTCCTTTTGTTAATATTTTTTGACTGACAGCCATTGTATGTATCATTTTA 638
******************************************** ************ **
consensus_13918#0 CTTTTTTTAGATAATGGATTTTCATTAA-------AAAAAA------- 2067
consensus_13918#2 CTTTTTTTAGATAATGGATTTTCATTAATCCGGCCAAAAAAAAAAAAA 439
consensus_13918#1 CTTTTTTTAGATAATGGATTTTCATTAA-------------------- 666
****************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||