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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1350 fasta sequence
[TACTCCAAGTTGATGGCACCAAACATTGAAAATTCACTGTCATGGCAGATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGC-TTTTCTCATTGAATAATAAAAGAGTATAT-GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTGCTGCAAAAAAAAAAA]
[+] EMBL AK100820 [TACTCCAAGTTGATGGCACCAAACATTGAAAATTCACTGTCATGGCAGATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCT ]
[+] EMBL CA763998 [ TCCAACAATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGTTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGNCCATTGGTTCAAGAAGNTCCTCCTGNAATGAT AAAAAGCACCATTGCACTCATTGCTTTTTCTCATTGAATAATAAAAGAGTATATGGTTTTGCGNGAATTTG ]
[+] EMBL AK062776 [ AAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT ]
[-] EMBL CA759481 [ GTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGTTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATATAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTGCTGCAAAAAAAAAAA]
[-] EMBL CA759482 [ GTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTGACTTGTTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATATAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTGCTGCAAAAAAAAAAA]
[-] EMBL CF318496 [ AAATGGCATCCCCATAGGACCGCAGGTGGCTTCACCTTGGCTTTACGTCTACCCTCAAGGGTTCCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTATACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGTTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGACAAAAAAGCACCATTGCACTCATTGC TTTTCTCATTGAATAATAAAAGAGTATAT GTTTTGCGTGAATTTGGTACAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTACTGCAAAAAAAAA ]
consensusID : consensus_14296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1020 fasta sequence
[CCGAATCGGCACGAGGCTGGCCTGTTTGCACCACCCCGATGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTG-ACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAAATTACAATGACGGAAGGAAAAAATACCCCAAGAACTTTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAATTTGGTAAAAGAAAAAAAAAAAAAAAAAAGCTCGTCCTCGGCCG]
[+] EMBL CB000178 [CCGAATCGGCACGAGGCTGGCCTGTTTGCACCACCCCGATGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACTCTCAAGGCTTCCGTGCACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGACTACATCACTGAAAATGGCGTTGATGAATT ]
[+] EMBL CA998998 [ GAATCGGCACGAGGCTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCTAAGCATGAGAGGATTGGTTGGGAATCGCTTGCCACAGTTCACTAAAGAACAGTCTAAGTTGGTCAAGGGTGCATTTGACTTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTG ACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTC ]
[+] EMBL BG101702 [ TTTATTGGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCCTTAACAACAGCTATACCACCGATTCTCGAGCTAATCTTACCGGTGTACGAAATGGCATCCCCATAGGACCGCAGGCTGCTTCACCTTGGCTTTACGTCTACCCTCAAGGCTTCCGTG ACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCC ]
[-] EMBL CF276515 [ TCCGTG ACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTTTACATCACTGAAAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGACGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAAATTACAATGACGGAAGGAAAAAATACCCCAAGAACTTTGCCCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAATTTGGTAAAAGAAAAAAAAAAAAAA ]
[+] EMBL BU572330 [ GCTAAGTGCTATAAGGGATGGAGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGGCTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCCCAAGAACTCTG CCATTGGTTCAAGAAGTTCCTCCTGAAATGATAAAAAAGCACCATTGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAA AAAAAAAAAAAAAAAAAAAAAAAGCTCGTCCTCGGCCG]
consensusID : consensus_14296#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1015 fasta sequence
[CTCTATTTTTCCTTTTTCTGTCCATGGCGGCAGCAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGCCGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAGTACGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGTCACTGAAGAATCCCTTTGAGCACTTGCAATTCATCCATGACAATGAGTTAAATCAAAGATCTGCAAATTTGGTTTTGATAATCCATGCTTAGCATTTAGTTCCAGTTCGGTCCTGGTGGTAGAATTTGTTAGTACATCCATTAGCAAATTACTTTAGTAACTTCAGCTATCTGTTTAAAATATCACATATCATGGATTGGATTC]
[+] EMBL AK105375 [CTCTATTTTTCCTTTTTCTGTCCATGGCGGCAGCAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGCCGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAGTACGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGTCACTGAAGAATCCCTTTGAGCACTTGCAATTCATCCATGACAATGAGTTAAATCAAAGATCTGCAAATTTGGTTTTGATAATCCATGCTTAGCATTTAGTTCCAGTTCGGTCCTGGTGGTAGAATTTGTTAGTACATCCATTAGCAAATTACTTTAGTAACTTCAGCTATCTGTTTAAAATATCACATATCATGGATTGGATTC]
[+] EMBL CF276514 [ ATTTTTCCTTTTTCTGTCCATGGCGGCAGCAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGCCGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAGTACGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGAGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAA ]
[+] EMBL CB652409 [ GCTGGCGNCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGCCGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAGTACGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGAAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGNGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCAT ]
consensusID : consensus_14296#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 966 fasta sequence
[CATGGNGGCANAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTNCGGCGCCTACAATGGCGCCGNCGAGCCGCCGCTCAGNCGGNGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGNCTCGTCGTCGTATCAGTACGAGGGTGGCGCANGGAGGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCCTAGCATGAGAGGATTGGTTGGGAATCG]
[+] EMBL OSS3155A [CATGGNGGCANAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCTCCTTGCTGTCGTCGCTTNCGGCGCCTACAATGGCGCCGNCGAGCCGCCGCTCAGNCGGNGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGNCTCGTCGTCGTATCAGTACGAGGGTGGCGCANGGAGGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGGAATGGATGCATACAGGTTC ]
[+] EMBL CB677500 [ GGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCAGCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGCTTCGGATTCCTACCATCTCTACAAGGAAGATGTGCGCCTCATGAAGGATAT GGGAATGGATGCATACAGGTTCTCCATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGGCTATGCAACTGGCCTGTTTGCACCAGGCCGTTGTTCGCCCTGGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATCATCAACTACTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATATCAGGCCTTACAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCCAAATCCAACGATGATGCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGATCCCCTCATTAGAGGCGACTACCCCCCTAGCATGAGAGGATTGGTTGGGAATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14296#2 ------------------------------------------------------------
consensus_14296#3 ------------------------------------------------------------
consensus_14296#0 TACTCCAAGTTGATGGCACCAAACATTGAAAATTCACTGTCATGGCAGATGGAAGTCTGA 60
consensus_14296#1 ------------------------------------------------------------
consensus_14296#2 ------------------------------------------------------------
consensus_14296#3 ------------------------------------------------------------
consensus_14296#0 GGGGTGGAGTCAACAAAGAAGGCATAAAGTACTACAATAATTTGATCAATGAGCTATTAT 120
consensus_14296#1 ------------------------------------------------------------
consensus_14296#2 ------------------------------------------------------------
consensus_14296#3 ------------------------------------------------------------
consensus_14296#0 CGAAAGGGGTGCAACCGTTTATTACCCTTTTCCACTGGGACTCACCTCAGGCGTTGGAAG 180
consensus_14296#1 ------------------------------------------------------------
consensus_14296#2 ------------------------------------------------------------
consensus_14296#3 ------------------------------------------------------------
consensus_14296#0 ATAAATATAATGGATTTCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAA 240
consensus_14296#1 ------------------------------------------------------------
consensus_14296#2 -----------------------------------------------CTCTATTTTTCCT 13
consensus_14296#3 ------------------------------------------------------------
consensus_14296#0 TCTGCTTCAAGGAGTTTGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGA 300
consensus_14296#1 ------------------------------------------------------------
consensus_14296#2 TTTTCTGTCCATGGCGGCAGCAGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCT 73
consensus_14296#3 ---------CATGGNGGCAN-AGGGGCAATGCCCGGTGGCCTTCTCCTCACGTTCCTCCT 50
consensus_14296#0 CTTTCTGCTCTAATGGCTAT--GCAACTG-GCCTGTTTGCACCAGGCCGTTGTTCGCCCT 357
consensus_14296#1 --------CCGAATCGGCAC--GAGGCTG-GCCTGTTTGCACCACCCCGATGTTCGCCCT 49
* * * * * *** * * ** * **** ***
consensus_14296#2 CCTTGCTG-----TCGTCGCTTCCGGCGCCTACAATGGCGCCGGCGAGCCGCCGGTCAGC 128
consensus_14296#3 CCTTGCTG-----TCGTCGCTTNCGGCGCCTACAATGGCGCCGNCGAGCCGCCGCTCAGN 105
consensus_14296#0 GGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATC 417
consensus_14296#1 GGGAGAAGGGAAATTGCAGTGTTGGAGATTCAGGAAGGGAGCCTTACACTGCATGCCATC 109
* * * * * * * * * ** * * ** **
consensus_14296#2 CGGAGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGCCTCGTCGTCGTATCAG----TA 184
consensus_14296#3 CGGNGAAGCTTCCCCAAGGGGTTCATCTTCGGGACAGNCTCGTCGTCGTATCAG----TA 161
consensus_14296#0 ATCAACTACTTGCCCACGCGGAAACTGTTCGGT-TGTACAAAGCGAAATATCAGGCCTTA 476
consensus_14296#1 ATCAACTACTTGCCCACGCGGAAACTGTTCGGT-TGTACAAAGCGAAATATCAGGCCTTA 168
*** **** * ** * ***** * ** ****** **
consensus_14296#2 CGAGGGTGGCGCAGCGGAGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCA 244
consensus_14296#3 CGAGGGTGGCGCANGGAGGGGCGGCAGAGGACCAAGCATCTGGGACACCTTCACACATCA 221
consensus_14296#0 CAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCC 536
consensus_14296#1 CAAAAAGGGAAGATTGGAATAACTCTGGTCTCGCACTGGTTTGTTCCCTTCTCCCGCTCC 228
* * ** * * * * * * * * * * * * **
consensus_14296#2 GCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGC-TTCGGATTCCTACC--A 301
consensus_14296#3 GCACCCAGAGAAAATCGCCGACAGAAGCAACGGGGATGTGGC-TTCGGATTCCTACC--A 278
consensus_14296#0 AAATCCAACGATGAT-GCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGA 595
consensus_14296#1 AAATCCAACGATGAT-GCTGCAAAGCGTGCTATAGACTTCATGTTTGGATGGTTTATGGA 287
* *** ** ** ** * * * ** * ** **** * *
consensus_14296#2 TCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGG-AATGGATGCATACAGGTTCT 360
consensus_14296#3 TCTCTACAAGGAAGATGTGCGCCTCATGAAGGATATGGGGAATGGATGCATACAGGTTCT 338
consensus_14296#0 TCCCCTCATTAGAGGCGACTACCCCCT-AAGCATGAGAGGATTGGTTGGGAATCGCTTGC 654
consensus_14296#1 TCCCCTCATTAGAGGCGACTACCCCCT-AAGCATGAGAGGATTGGTTGGGAATCGCTTGC 346
** * ** ** * ** * * *** ** * * * *** ** * * **
consensus_14296#2 C-CATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAA 419
consensus_14296#3 C-CATCTCATGGACAAGAATCCTTCCAAATGGAAGTCTGAGGGGTGGAGTCAACAAAGAA 397
consensus_14296#0 CACAGTTCAC---TAAAGAACAGTCTAAGTTGG----TCAAGGGTGCATTTGACTTTATT 707
consensus_14296#1 CACAGTTCAC---TAAAGAACAGTCTAAGTTGG----TCAAGGGTGCATTTGACTTTATT 399
* ** *** ** * * ** ** * * * * ***** * * **
consensus_14296#2 GGCATAAAGTACTACAAT---AATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCG 476
consensus_14296#3 GGCATAAAGTACTACAAT---AATTTGATCAATGAGCTATTATCGAAAGGGGTGCAACCG 454
consensus_14296#0 GGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCC----- 762
consensus_14296#1 GGACTTAACTACTACACTGCGAACTATGCTGATAACCTTCCTCCATCAAATGGCC----- 454
** * ** ******* * ** * ** * ** * * * *
consensus_14296#2 TTTATTACC-CTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATT 535
consensus_14296#3 TTTATTACC-CTTTTCCACTGGGACTCACCTCAGGCGTTGGAAGATAAATATAATGGATT 513
consensus_14296#0 TTAACAACAGCTATACCACCGATTCTCGAGCTAATCTT--ACCGGTGTACGAAATGGCAT 820
consensus_14296#1 TTAACAACAGCTATACCACCGATTCTCGAGCTAATCTT--ACCGGTGTACGAAATGGCAT 512
** * ** ** * **** * *** * * * * * * ***** *
consensus_14296#2 TCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTT 595
consensus_14296#3 TCTTAGCCCTAATATCATAAATGACTTTAAGGACTATGCTGAAATCTGCTTCAAGGAGTT 573
consensus_14296#0 CCCCA----TAGGACCGCAGGCTGCTTCACC--TTGGCTTTACGTCTACCCTCAAGGCTT 874
consensus_14296#1 CCCCA----TAGGACCGCAGGCTGCTTCACC--TTGGCTTTACGTCTACCCTCAAGGCTT 566
* * ** * * * *** * * * * *** * * * **
consensus_14296#2 TGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGG 655
consensus_14296#3 TGGTGACAGAGTGAAAAATTGGATCACCTTCAATGAGCCTTGGACTTTCTGCTCTAATGG 633
consensus_14296#0 CCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGA 934
consensus_14296#1 CCGTGACTTGCTACTTTATGTTAAGGAGAACTATGGCAATCCTACCGTCTACATCACTGA 626
***** * ** * * *** * ** *** * * **
consensus_14296#2 CTATGCAACTGGCCTGTTTG-CACCAGGCCGTTGTTCGCCCTGGGAG-----AAGGGAAA 709
consensus_14296#3 CTATGCAACTGGCCTGTTTG-CACCAGGCCGTTGTTCGCCCTGGGAG-----AAGGGAAA 687
consensus_14296#0 AAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGA 994
consensus_14296#1 AAATGGCGTTGATGAATTCAACAATAAGACCTTACCACTCCAAGAAGCCTTGAAGGATGA 686
*** ** ** ** * * * ** ** * ** **** *
consensus_14296#2 TTGCAGTGTTGGAGATT--CAGGAAGGGAGCCTTACACTGC---ATGCCATCATCAACTA 764
consensus_14296#3 TTGCAGTGTTGGAGATT--CAGGAAGGGAGCCTTACACTGC---ATGCCATCATCAACTA 742
consensus_14296#0 CGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGG 1054
consensus_14296#1 CGCTAGGATAGAATACTACCACAAGCACCTCCTTTCCCTGCTAAGTGCTATAAGGGATGG 746
** * * * * * ** * **** * **** *** ** * *
consensus_14296#2 CTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATA---TCAGGTCACTGAAGAA 821
consensus_14296#3 CTTGCCCACGCGGAAACTGTTCGGTTGTACAAAGCGAAATA---TCAGGCCTTACAAAAA 799
consensus_14296#0 AGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGG 1114
consensus_14296#1 AGCAAACGTGAAGGGATACTTTGCATGGTCGCTGCTTGATAACTTCGAGTGGTCGAACGG 806
* * * * ** * ** * ** *** ** * **
consensus_14296#2 TCCCTTTGAGCA--CTTG--CAA--TTCATCCATGACAATGAGTTAAATCAAAGATCTGC 875
consensus_14296#3 GG-----GAAGA--TTGGAATAA--CTCTGGTCTCGCACTGGTTTGTTCCCT---TCTCC 847
consensus_14296#0 CTACACAGTTCGATTTGGGATAAACTTCGTAGATTACAATGACGGAAGGAAGAGATACCC 1174
consensus_14296#1 CTACACAGTTCGATTTGGGATAAACTTCGTAAATTACAATGACGGAAGGAAAAAATACCC 866
* * * ** ** * ** ** * *
consensus_14296#2 AAATTTGGTTTTGATAATCCATGCTTAGCATTTAGTTCCAGTTCGGTCCTGGTG----GT 931
consensus_14296#3 CGCTCCAAATCCAACGATG-ATGCTGCAAAGCGTGCTATAGACT--TCATGTTT----GG 900
consensus_14296#0 CAAG--AACTCTGCCCATTGGTTC-AAGAAGTTCCTCCTGAAATGATAAAAAAGCACCAT 1231
consensus_14296#1 CAAG--AACTTTGCCCATTGGTTC-AAGAAGTTCCTCCTGAAATGATAAAAAAGCACCAT 923
* ** * * * *
consensus_14296#2 AGAATTTGTTAGTACATCCATT-AGCAA--ATTACTTTAGTAACTTCAGCTATCTGTTTA 988
consensus_14296#3 ATGGTTTATGGATCCCCTCATT-AGAGGCGACTACCCCCCTAGCATGAGAGGATTGGTTG 959
consensus_14296#0 TGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAATTTGGTA 1291
consensus_14296#1 TGCACTCATTGCTTTTCTCATTGAATAATAAAAGAGTATATGTTTTGCGTGAATTTGGTA 983
* * * **** * * * * * * *
consensus_14296#2 AAATATCACATATC---------ATGGATTGGATTC----------------------- 1015
consensus_14296#3 GGA-ATCG--------------------------------------------------- 966
consensus_14296#0 CAAGAGATGGAAGTAATCCAGTTAAATAATAAATCCCTCTCTTGCTGCAAAAAAAAAAA 1350
consensus_14296#1 AAAGAAAAAAAAA----------AAAAAAAAAGCTCGTCCTCGGCCG------------ 1020
* *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||