cluster # 14346

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14346 cluster # 14346 Sequences # 16 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14346#0 length = 1346 sequences # 11
consensus_14346#1 length = 1107 sequences # 2

consensus_14346#2 length = 319 sequences # 1
consensus_14346#3 length = 303 sequences # 2

consensusID : consensus_14346#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1346
fasta sequence

                              [CGCGCGCCTCCCCCGGCGCCACCGCCGCCGCCGCCGCAGCCGCAGCCTCAGGCGGCCAAGAAAAGCCGCCGCGGGCCGCGCTCTCGCAGCTCGCAATACCGCGGCGTCACCTTCTACCGCCGCACCGGCCGCTGGGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTGGATTCGACACTGCTCACGCAGCTGCAAGGGCGTACGACAGGGCGGCGATCAAGTTCAGGGGAGTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGATGAAGAGCTTGTCCAAGGAGGAGTTCGTGCACGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGC-GGCAGCTCAAAGTACAGGGGTGTCACCCTCCACAAGTGCGGCCGCTGGGAGGCTCGCATGGGCCAATTCCTTGGCAAGAAGTACATATATCTTGGGCTATTCGACAGCGAAGTAGAGGCTGCAAGGGCTTATGATAAGGCTGCGATCAAATGCAATGGCAGAGAAGCCGTCACCAACTTCGAGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCAAGGAGCCGATGTGGATCTGAACCTGAGAATATCTCAGCCTGCAGCCTCACAGCAGAGCCCCAAGAGGGATAGCGGCTCCCTTG-GCC-TGCAAATCCACCATGGATCATTTGAAGGTTCTGAATTCAAGAGAGCAAAGAATGATGCAGCTCCCTCTGAACTTGCTAGCCGCCCTCATCGGTTCCCTCTTCTGACCGAGCATCCGCCAATCTGGACTGCCCAACCTCATCCCCTATTCCCAAATAATGAGGATGCATCCAGATCATCGGATCAGAAGAGGAAGCCATCAGAGGGGGTAGCTGTTCCAAGCTGGGCATGGAAGCAGGTGAGCCATCATCACCCTGCTCCTCCTCACACGCTGCCATTGCCCTTCTTCTCCTCCTCCTCGTCGTCGCCGTCGTCGTCCTCCGCTGCAGCATCATCAGGATTCTCCAAAGCCGCCACGA-CAGCAGCTGCTGCCC-AACACACTGCCACCCTCCGGTTCGACCCGACGGCGCCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCATCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAA--TTTTTTTTTTTCTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTA-TTGCATCCACACATAAAACGCCCAAAAAATGTTCCAAATGCTCCTAAAAAAAAAAAAAAA]

[-] EMBL AU175223             [CGCGCGCCTCCCCCGGCGCCACCGCCGCCGCCGCCGCAGCCGCAGCCTCAGGCGGCCAAGAAAAGCCGCCGCGGGCCGCGCTCTCGCAGCTCGCAATACCGCGGCGTCACCTTCTACCGCCGCACCGGCCGCTGGGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTGGATTCGACACTGCTCACGCAGCTGCAAGGGCGTACGACAGGGCGGCGATCAAGTTCAGGGGAGTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGNAGATGAAGAGCTTGTCCAAGGAGGAGTTCGTGCACGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGN GGCAGCTCAAAGTACAGGGGTGTCACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU162627             [         CCCCCGGCGCCACCGCCGCCGCCGCCGCAGCCGCAGCCTCAGGCGGCCAAGAAAAGCCGCCGCGGGCCGCGCTCTCGCAGCTCGCAATACCGCGGCGTCACCTTCTACCGCCGCACCGGCCGCTGGGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTGGATTCGACACTGCTCACGCAGCTGCAAGGGCGTACGACAGGGCGGCGATCAAGTTCAGGGGAGTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGATGAAGAGCTTGTCCAAGGAGGAGTTCGTGCACGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGCGGGCAGTTCAAAGTACAGGGGTGTCACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AU070909             [                                                                                                                                      GGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTGGATTCGACNATG TCACGCAGCTGCAAGGGNGTACGACAGGGCGGCGATCAAGTTCAGGGGNGTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGATGAAGAGCTTGTCCAAGGAGGNGTTCGTGCACGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGC GGCAGCTCAAAGTACAGGGGTGTCACCCTCCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB653437             [                                                                                                                                                               AAGCAAGTCTACCTAGGTGGATTCGACACTGCTCACGCAGCTGCAAGGGCGTACGACAGGGCGGCGATCAAGTTCAGGGGAGTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGATGAAGAGCTTGTCCAAGGAGGAGTTCGTGCACGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGC GGCAGCTCAAAGTACAGGGGTGTCACCCTCCACAAGTGCGGCCGCTGGGAGGCTCGCATGGGCCAATTCCTTGGCAAGAAGTACATATATCTTGGGCTATTCGACAGCGAAGTAGAGGCTGCAAGGGCTTATGATAAGGCTGCGATCAAATGCAATGGCAGAGAAGCCGTCACCAACTTCGAGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCAAGGAGCCGATGTGGATCTGAACCTGAGAATATCTCAGCCTGCAGCCTCACAGCAGAGCCCCAAGAGGGATAGCGGCTCCCTTG GCC TGCAAATCCACCATGGATCATTTGAAGGTTCTGAATTCAAGAGAGCAAAGAATGATGCAGCTCCCTCTGAACTTGCTAGCCGCCCTCATCGGTTCCCTCTTCTGACCGAGCATCCGCCAATCTGGACTGCCCAACCTCATCCCCTATTCCCAAATAATGAGGATGCATCCAGATCATCGGATCAGAAGAGGAAGCCATCAGAGGGGGTAGCTGTTCCAAGCTGGGCATGGAAGCAGGTGAGCCATCATCACCCTGCTCCTCCTCACACGCTGCCATTGCCCTTCTTCTCCTCCTCCTCGTCGTCGCCGTCGTCGTCCTCCGCTG                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BU667272             [                                                                                                                                                                                                                                                                                                                                                                                                                              TCGCATGGGCCAATTCCTTGGCAAGAAGTACATATATCTTGGGCTATTCGACAGCGAAGTAGAGGCTGCAAGGGCTTATGATAAGGCTGCGATCAAATGCAATGGCAGAGAAGCCGTCACCAACTTCGAGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCAAGGAGCCGATGTGGATCTGAACCTGAGCATATCTCAGCCTGCAGCCTCACAGCAGAGCCCCAAGAGGGATAGCGGCTCCCTTGAGCCGTGCAAATCCACCATGGATCATTTGAAGGTTCTGAATTCAAGAGAGCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA755817             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AATGCAATGGCAGAGAAGCCGTCACCAACTTCGAGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCAAGGAGCCGATGTGGATCTGAACCTGAGAATATCTCAGCCTGCAGCCTCACAGCAGAGCCCCAAGAGGGATAGCGGCTCCCTTG GCC TGCAAATCCACCATGGATCATTTGAAGGTTCTGAATTCAAGAGAGCAAAGAATGATGCAGCTCCCTCTGAACTTGCTAGCCGCCCTCATCGGTTCCCTCTTCTGACCGAGCATCCGCCAATCTGGACTGCCCAACCTCATCCCCTATTCCCAAATAATGAGGATGCATCCAGATCATCGGATCAGAAGAGGAAGCCATCAGAGGGGGTAGCTGTTCCAAGCTGGGCATGGAAGCAGGTGAGCCATCATCACCCTGCTCCTCCTCACACGCTGCCATTGCCCTTCTTCTCCTCCTCGTCGTCGTCGCCGTCGTCGTCCTCCGCTGCAGCATCATCAGGATTCTCCAAAGCCGCCACGA CAGCAGCTGCTGCCC AACACACTGCCACCCTCCGGTTCGTCCCGACGGCGCCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGAT                                                                                                                                                                                                                                  ]
[-] EMBL CB679168             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAGAGGGATAGCGGCTCCCTTG GCC TGCAAATCCACCATGGATCATTTGAAGGTTCTGAATTCAAGAGAGCAAAGAATGATGCAGCTCCCTCTGAACTTGCTAGCCGCCCTCATCGGTTCCCTCTTCTGACCGAGCATCCGCCAATCTGGACTGCCCAACCTCATCCCCTATTCCCAAATAATGAGGATGCATCCAGATCATCGGATCAGAAGAGGAAGCCATCAGAGGGGGTAGCTGTTCCAAGCTGGGCATGGAAGCAGGTGAGCCATCATCACCCTGCTCCTCCTCACACGCTGCCATTGCCCTTCTTCTCCTCCTCCTCGTCGTCGCCGTCGTCGTCCTCCGCTGCAGCATCATCAGGATTCTCCAAAGCCGCCACGA CAGCAGCTGCTGCCC AACACACTGCCACCCTCCGGTTCGACCCGACGGCGCCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCATCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAA  TTTTTTTTTTTCTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTA AGGGATCCACACATAA                                            ]
[+] EMBL BE229936             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATGATGCAGCTCCCTCTGAACTTGCTAGCCGCCCTCATCGGTTCCCTATTATGACCGATCATCCGCCAATCTGGACTGCCCAACCTCATCCCCTATTCCCAAATAATGAGGATGCATCCAGATCATCGGATCAGAAGAGGAAGCCATCAGAGGGGGTAGCTGTTCCAAGCTGGGCATGGAAGCAGGTGAGCCATCATCACCCTGCTCCTCCTCACACGCTGNCATTGCCCTTCTTCTCCTCCTCCTCGTCGTCGCCGTCGTCGTCCTCCGCTGCAGCATCATCAGGATTCTCCAAAGCCGCCACGA CAGCAGCTGCTGGCC AACACACTGGCACCCTTCGGT                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSR09502A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGCTCCCTCTGAACTTGCTAGCCGCCCTCATCGGTTCCCTCTTCTGACCGAGCATCCGCCAATCTGGACTGCCCAACCTCATCCCCTATTCCCAAATAATGAGGATGCATCCAGATCATCGGATCAGAAGAGGAAGCCATCAGAGGGGGTAGCTGTTCCAAGCTGGGCATGGAAGCAGGTGAGCCATCATCACCCTGCTCCTCCTCACACGCTGCCATTGCCCTTCTTCTCCTCCTCCTCGTCGTCGCCGTCGTCGTCCTCCGCTGCAGCATCATCAGGATTCTCCAAAGCCGCCACGACCAGCAGCTGCTGCCCAAACACACTGCCACCCTCCGGTTCGACCCGACGGAGCCGTAGTCTTCGTCGTC                                                                                                                                                                                                                                                            ]
[+] EMBL BE229414             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cgagCGCCGTCGTCGTCCTCCGCTGCAGCATCATCAGGATTCTCCAAAGCCGCCACGA CAGCAGCTGCTGCCC AACACACTGCCACCCTCCGGTTCGACCCGACGGCGCCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCATCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAATTTTTTTTTTTTTCTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACACATAAAACGCCCAAAAAATGTTCCAAATGCTCCTAAAAAAAAAAAAAAA]
[+] EMBL AU095439             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTCGTCCTCCGCTGNAGCATCATCAGGATTCTCCAAAGCCGCCACGA CNGCAGTTGCTGCCN AACACACTGCCACCATCNGGTTCGACCCGACGGCGCCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCATCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAA  TTTTTTTTTTTCTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACACATAAAACGCCCAAAAAATGTTCCAAATGCTCCTAAAAAAAAAAAAAA ]




>consensus_14346#0
CGCGCGCCTCCCCCGGCGCCACCGCCGCCGCCGCCGCAGCCGCAGCCTCAGGCGGCCAAG
AAAAGCCGCCGCGGGCCGCGCTCTCGCAGCTCGCAATACCGCGGCGTCACCTTCTACCGC
CGCACCGGCCGCTGGGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTGGA
TTCGACACTGCTCACGCAGCTGCAAGGGCGTACGACAGGGCGGCGATCAAGTTCAGGGGA
GTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGATGAAG
AGCTTGTCCAAGGAGGAGTTCGTGCACGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGC
GGCAGCTCAAAGTACAGGGGTGTCACCCTCCACAAGTGCGGCCGCTGGGAGGCTCGCATG
GGCCAATTCCTTGGCAAGAAGTACATATATCTTGGGCTATTCGACAGCGAAGTAGAGGCT
GCAAGGGCTTATGATAAGGCTGCGATCAAATGCAATGGCAGAGAAGCCGTCACCAACTTC
GAGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCAAGGAGCCGATGTG
GATCTGAACCTGAGAATATCTCAGCCTGCAGCCTCACAGCAGAGCCCCAAGAGGGATAGC
GGCTCCCTTGGCCTGCAAATCCACCATGGATCATTTGAAGGTTCTGAATTCAAGAGAGCA
AAGAATGATGCAGCTCCCTCTGAACTTGCTAGCCGCCCTCATCGGTTCCCTCTTCTGACC
GAGCATCCGCCAATCTGGACTGCCCAACCTCATCCCCTATTCCCAAATAATGAGGATGCA
TCCAGATCATCGGATCAGAAGAGGAAGCCATCAGAGGGGGTAGCTGTTCCAAGCTGGGCA
TGGAAGCAGGTGAGCCATCATCACCCTGCTCCTCCTCACACGCTGCCATTGCCCTTCTTC
TCCTCCTCCTCGTCGTCGCCGTCGTCGTCCTCCGCTGCAGCATCATCAGGATTCTCCAAA
GCCGCCACGACAGCAGCTGCTGCCCAACACACTGCCACCCTCCGGTTCGACCCGACGGCG
CCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCA
TCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAATTTTTTTTTTTCTTGGCCGTCGC
CGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGA
TTAGTTAATTGGGATTCATGACTGTATTGCATCCACACATAAAACGCCCAAAAAATGTTC
CAAATGCTCCTAAAAAAAAAAAAAAA

consensusID : consensus_14346#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1107
fasta sequence

                              [CCTCAGGCATTCACTCCAGCCCCTGACACCAACACAGCGCCCACAACACCCAAGACAATCAAGAATCCTCAGCCACACGCAGCACATCACCCACAGGCAGCCACCAGCACAGCACAGCACAGCACAGCAAGCACAGCAAGCACTTCAGGCAGGCACAAAGAAAAGCCAGCACGCAGGGCCACAGCAGCATCTTCGCAAGCATCGCAAATACCAGCAGGCAGTCAACACATTCTACCAGCACAGCACCAGGCCGCTGGGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTGGATTCGACACTGCTCACAGCAGCTGCAAGGGCGTACAGACAGGGCGGCAGATCAAGTTCAGGGGAGTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGATGAAGAGCTTGTCCAA-GGAGGAGTTCGTGCACAGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGCGGCAGCTCAAAGTACAGGGGTGTCACCCTCCACAAATNCGGCCGCTGGGAGGCTCGCATGGGCCAATTCCTTGGCAANAANTNCATATATCTTGGGCTATTCNACAGCGAANTNTAAGCTGCNAGGGCTTATGATAANGCTGCGATCAAATGCNATGGCAGANAANCCGTCACCAACTTCGAGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCCAGGAGCCGATGTNGATCTGAACCTGAGAATATCTCANCCTGCAGCCTCNCAGCANAACCCCNANAAGGATAGCGGCTCCCNTGGCCTGCNAATCCCCNTGGATCATTTGAANGTTCTGAATTCCNNAAANCCNANAATGATGCNCTCCCTCTGAACTTGCTTNCCCGCCCNCNTCCGGTTCCCTCTTCTGAACNAAACATCCNCCNATTCTTGGAATGGCCCAACCCCCATNCCCCTATTNCCCCAANTTNNTGAAAGGAATGCCCTCCCCAATTCTTTCCGGANTNTTAAAAAAAGGAAANCCCCNCCCNAANGGGGGGTTGCTTNTTTCCCCANCCTTGGGGGCCTTGGGAAAAACCCNGGTTTAAAACCATTCCNTTCNNCCCCTGGGTTC]

[+] EMBL BI809083             [CCTCAGGCATTCACTCCAGCCCCTGACACCAACACAGCGCCCACAACACCCAAGACAATCAAGAATCCTCAGCCACACGCAGCACATCACCCACAGGCAGCCACCAGCACAGCACAGCACAGCACAGCAAGCACAGCAAGCACTTCAGGCAGGCACAAAGAAAAGCCAGCACGCAGGGCCACAGCAGCATCTTCGCAAGCATCGCAAATACCAGCAGGCAGTCAACACATTCTACCAGCACAGCACCAGGCCGCTGGGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTGGATTCGACACTGCTCACAGCAGCTGCAAGGGCGTACAGACAGGGCGGCAGATCAAGTTCAGGGGAGTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGATGAAGAGCTTGTCCAA GGAGGAGTTCGTGCACAGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGCGGCAGCTCAAAGTACAGGGGTGTCACCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BE229692             [                                                                                                                                                                                                                                                                                                                                                                                 nagnTGAC TCAACTTCNACCTGAGCGACTACGANGAGGACATGANGCAGATGAAGAGCTTGTCCAAGGGAGGAGTTCGTGCAC GTTCTCCGGCGACAGAACACCGGCTTCTCCCGCGGCAGCTCAAANTACAGGGGTGTCNCCCTCCACAAATNCGGCCGCTGGGAGGCTCGCATGGGCCAATTCCTTGGCAANAANTNCATATATCTTGGGCTATTCNACAGCGAANTNTAAGCTGCNAGGGCTTATGATAANGCTGCGATCAAATGCNATGGCAGANAANCCGTCACCAACTTCGAGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCCAGGAGCCGATGTNGATCTGAACCTGAGAATATCTCANCCTGCAGCCTCNCAGCANAACCCCNANAAGGATAGCGGCTCCCNTGGCCTGCNAATCCCCNTGGATCATTTGAANGTTCTGAATTCCNNAAANCCNANAATGATGCNCTCCCTCTGAACTTGCTTNCCCGCCCNCNTCCGGTTCCCTCTTCTGAACNAAACATCCNCCNATTCTTGGAATGGCCCAACCCCCATNCCCCTATTNCCCCAANTTNNTGAAAGGAATGCCCTCCCCAATTCTTTCCGGANTNTTAAAAAAAGGAAANCCCCNCCCNAANGGGGGGTTGCTTNTTTCCCCANCCTTGGGGGCCTTGGGAAAAACCCNGGTTTAAAACCATTCCNTTCNNCCCCTGGGTTC]




>consensus_14346#1
CCTCAGGCATTCACTCCAGCCCCTGACACCAACACAGCGCCCACAACACCCAAGACAATC
AAGAATCCTCAGCCACACGCAGCACATCACCCACAGGCAGCCACCAGCACAGCACAGCAC
AGCACAGCAAGCACAGCAAGCACTTCAGGCAGGCACAAAGAAAAGCCAGCACGCAGGGCC
ACAGCAGCATCTTCGCAAGCATCGCAAATACCAGCAGGCAGTCAACACATTCTACCAGCA
CAGCACCAGGCCGCTGGGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTG
GATTCGACACTGCTCACAGCAGCTGCAAGGGCGTACAGACAGGGCGGCAGATCAAGTTCA
GGGGAGTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGA
TGAAGAGCTTGTCCAAGGAGGAGTTCGTGCACAGTTCTCCGGCGACAGAGCACCGGCTTC
TCCCGCGGCAGCTCAAAGTACAGGGGTGTCACCCTCCACAAATNCGGCCGCTGGGAGGCT
CGCATGGGCCAATTCCTTGGCAANAANTNCATATATCTTGGGCTATTCNACAGCGAANTN
TAAGCTGCNAGGGCTTATGATAANGCTGCGATCAAATGCNATGGCAGANAANCCGTCACC
AACTTCGAGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCCAGGAGCC
GATGTNGATCTGAACCTGAGAATATCTCANCCTGCAGCCTCNCAGCANAACCCCNANAAG
GATAGCGGCTCCCNTGGCCTGCNAATCCCCNTGGATCATTTGAANGTTCTGAATTCCNNA
AANCCNANAATGATGCNCTCCCTCTGAACTTGCTTNCCCGCCCNCNTCCGGTTCCCTCTT
CTGAACNAAACATCCNCCNATTCTTGGAATGGCCCAACCCCCATNCCCCTATTNCCCCAA
NTTNNTGAAAGGAATGCCCTCCCCAATTCTTTCCGGANTNTTAAAAAAAGGAAANCCCCN
CCCNAANGGGGGGTTGCTTNTTTCCCCANCCTTGGGGGCCTTGGGAAAAACCCNGGTTTA
AAACCATTCCNTTCNNCCCCTGGGTTC

consensusID : consensus_14346#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [CCCTCCGGTTCGACCCGACGGCGCCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCATCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAATTTTTTTTTTTTCTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU070908             [CCCTCCGGTTCGACCCGACGGCGCCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCATCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAATTTTTTTTTTTTCTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14346#2
CCCTCCGGTTCGACCCGACGGCGCCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACC
ATTGATAAAAAGGAAAGAAGCCATCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAA
TTTTTTTTTTTTCTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGC
CGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTATTTGCATCCA
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

consensusID : consensus_14346#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 303
fasta sequence

                              [TTGCCGGGAANCCGGCAAATTTTTTTTTTTNTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACACATAAAACGCCCAAAAAATGTTCCAAATGCTCCTAGTCTCTTTGCCCCCTGATCTCANAGAACAGATCATACTAACCTNAGATGTATTGATCCACACNCCTTGTTGTANAGAATTTGTTATATCAGTTACTGAGATTTCTTACCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU197868             [TTGCCGGGAANCCGGCAAATTTTTTTTTTTNTTGGCCGTCGCCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACACATAAAACGCCCAAAAAATGTTCCAAATGCTCCTAGTCTCTTTGCCCCCTGATCTCANAGAACAGATCATACTAACCTNAGATGTATTGATCCACACNCCTTGTTGTANAGAATTTGTTATATCAGTTACTGAGATTTCTTACCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU197856             [                                                            GTTTTTGCNCCGGCGGGCCGGCCGGGTGGTTTTTTNTAGTGATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACACATAAAACGCCCAAAAAATGTTCCAAATGCTCCTAGTNTTTTTGCCCCCTGATTTCANANAACAGATCATACTAACCTTANATGTATTGATCCACACACCTTNTTGTAAANAATTTGTTATATCAGTTACTGAGATTACTAACCAAAAAAAAAAAAAAAAAAA]




>consensus_14346#3
TTGCCGGGAANCCGGCAAATTTTTTTTTTTNTTGGCCGTCGCCGGCGTTTCAACGTTTTC
GTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTGATTAGTTAATTGGGATTCA
TGACTGTATTTGCATCCACACATAAAACGCCCAAAAAATGTTCCAAATGCTCCTAGTCTC
TTTGCCCCCTGATCTCANAGAACAGATCATACTAACCTNAGATGTATTGATCCACACNCC
TTGTTGTANAGAATTTGTTATATCAGTTACTGAGATTTCTTACCAAAAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      CGCGCGCCTCCCCCGGCGCCACCGCCGCCGCCGCCGCAGCCGCAGCCTCAGGCGGCCAAG 60
consensus_14346#1      ------------------------------------------------------------
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      AAAAGCCGCCGCGGGCCGCGCTCTCGCAGCTCGCAATACCGCGGCGTCACCTTCTACCGC 120
consensus_14346#1      ------------------------------------------------------------
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      CGCACCGGCCGCTGGGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTGGA 180
consensus_14346#1      ------------------------------------------------------------
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      TTCGACACTGCTCACGCAGCTGCAAGGGCGTACGACAGGGCGGCGATCAAGTTCAGGGGA 240
consensus_14346#1      ------------------------------------------------------------
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      GTAGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGATGAAG 300
consensus_14346#1      ------------------------------------------------------------
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      AGCTTGTCCAAGGAGGAGTTCGTGCACGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGC 360
consensus_14346#1      -----------------------------------------------------CCTCAGG 7
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      GGCAGCTCAAAGTACAGGGGTGTCACCCTCCACAAGTGCGGCCGCTGGGAGGCTCGCATG 420
consensus_14346#1      CATTCACTCCAGCCCCTGACACCAACACAGCGCCCACAACACCCAAGACAATCAAGAATC 67
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      GGCCAATTCCTTGGCAAGAAGTACATATATCTTGGGCTATTCGACAGCGAAGTAGAGGCT 480
consensus_14346#1      CTCAGCCACACGCAGCACATCACCCACAGGCAGCCACCAGCACAGCACAGCACAGCACAG 127
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      GCAAGGGCTTATGATAAGGCTGCGATCAAATGCAATGGCAGAGAAGCCGTCACCAACTTC 540
consensus_14346#1      CAAGCACAGCAAGCACTTCAGGCAGGCACAAAGAAAAGCCAGCACGCAGGGCCACAGCAG 187
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      GAGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCAAGGAGCCGATGTG 600
consensus_14346#1      CATCTTCGCAAGCATCGCAAATACCAGCAGGCAGTCAACACATTCTACCAGCACAGCACC 247
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      GATCTGAACCTGAGAATATCTCAGCCTGCAGCCTCACAGCAGAGCCCCAAGAGGGATAGC 660
consensus_14346#1      AGGCCGCTGGGAATCCCACATCTGGGATTGCGGCAAGCAAGTCTACCTAGGTGGATTCGA 307
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      GGCTCCCTTGGCCTGCAAATCCACCATGGATCATTTGAAGGTTCTGAATTCAAGAGAGCA 720
consensus_14346#1      CACTGCTCACAGCAGCTGCAAGGGCGTACAGACAGGGCGGCAGATCAAGTTCAGGGGAGT 367
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      AAGAATGATGCAGCTCCCTCTGAACTTGCTAGCCGCCCTCATCGGTTCCCTCTTCTGACC 780
consensus_14346#1      AGAGGCTGACATCAACTTCAACCTGAGCGACTACGAGGAGGACATGAGGCAGATGAAGAG 427
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      GAGCATCCGCCAATCTGGACTGCCCAACCTCATCCCCTATTCCCAAATAATGAGGATGCA 840
consensus_14346#1      CTTGTCCAAGGAGGAGTTCGTGCACAGTTCTCCGGCGACAGAGCACCGGCTTCTCCCGCG 487
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      TCCAGATCATCGGATCAGAAGAGGAAGCCATCAGAGGGGGTAGCTGTTCCAAGCTGGGCA 900
consensus_14346#1      GCAGCTCAAAGTACAGGGGTGTCACCCTCCACAAATNCGGCCGCTGGGAGGCTCGCATGG 547
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      TGGAAGCAGGTGAGCCATCATCACCCTGCTCCTCCTCACACGCTGCCATTGCCCTTCTTC 960
consensus_14346#1      GCCAATTCCTTGGCAANAANTNCATATATCTTGGGCTATTCNACAGCGAANTNTAAGCTG 607
                                                                                   

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      TCCTCCTCCTCGTCGTCGCCGTCGTCGTCCTCCGCTGCAGCATCATCAGGATTCTCCAAA 1020
consensus_14346#1      CNAGGGCTTATGATAANGCTGCGATCAAATGCNATGGCAGANAANCCGTCACCAACTTCG 667
                                                                                   

consensus_14346#2      -------------------------------------CCCTCCGGTTCGACCCGACGGCG 23
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      GCCGCCACGACAGCAGCTGCTGCCCAACACACTGCCACCCTCCGGTTCGACCCGACGGCG 1080
consensus_14346#1      AGCCCAGCACATATGATGGTGAGCTGCCTACTGATGCTGCTGCTCCAGGAGCCGATGTNG 727
                                                                                   

consensus_14346#2      CCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCA 83
consensus_14346#3      ------------------------------------------------------------
consensus_14346#0      CCGTCGTCTTCGTCGTCAAGCCGCCATCACCACCACCATTGATAAAAAGGAAAGAAGCCA 1140
consensus_14346#1      ATCTGAACCTGAGAATATCTCANCCTGCAGCCTCNCAGCANAACCCCNANAAGGATAGCG 787
                                                                                   

consensus_14346#2      TCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAATTTTTTTTTTTTCTTGGCCGTCG 143
consensus_14346#3      ------------------TTGCCGGGAANCCGGCAAATTTTTTTTTTTN-TTGGCCGTCG 41
consensus_14346#0      TCACCACCACTGTAAATTTTGCCGGGAAGCCGGCAAATTTTTTTTTTTC-TTGGCCGTCG 1199
consensus_14346#1      GCTCCCNTGGCCTGCNAATCCCCNTGGATCATTTGAANGTTCTGAATTC-CNNAAANCCN 846
                                         *  **  * * *     **  ** *   **          * 

consensus_14346#2      CCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTG 203
consensus_14346#3      CCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTG 101
consensus_14346#0      CCGGCGTTTCAACGTTTTCGTCTTTGCGCCGGCGGGCCGGCCGGGTGGTTTCTTGTAGTG 1259
consensus_14346#1      ANAATGATGCNCTCCCTCTGAACTTGCTTNCCCGCCCNCNTCCGGTTCCCTCTTCTGAAC 906
                            * * *      *  *   ****     **  *    * ***    **** *    

consensus_14346#2      ATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACAAAAAAAAAAAAAAAAAAAAAA 263
consensus_14346#3      ATTAGTTAATTGGGATTCATGACTGTATTTGCATCCACACATAAAACGCCCAAAAAATGT 161
consensus_14346#0      ATTAGTTAATTGGGATTCATGACTGTATT-GCATCCACACATAAAACGCCCAAAAAATGT 1318
consensus_14346#1      NAAACATCCNCCNATTCTTGGAATGGCCCAACCCCCATNCCCCTATTNCCCCAANTTNNT 966
                          *  *        *    ** **      *  ***       *       **      

consensus_14346#2      AAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA-AAAAAAAAAAAAAAAAAAAAAAAA--- 319
consensus_14346#3      TCCAAATGCTCCTAGTCTCTTTGCCCCCTGAT-CTCANAGAACAGATCATACTAACCTNA 220
consensus_14346#0      TCCAAATGCTCCTAAAAAAAAAAAAAAA-------------------------------- 1346
consensus_14346#1      GAAAGGAATGCCCTCCCCAATTCTTTCCGGANTNTTAAAAAAAGGAAANCCCCNCCCNAA 1026
                          *                                                        

consensus_14346#2      ------------------------------------------------------------
consensus_14346#3      GATGTATTGATCCACACNCCTTGTTGTANAGAATTTGTTATATCAGTTACTGAGATTTCT 280
consensus_14346#0      ------------------------------------------------------------
consensus_14346#1      NGGGGGGTTGCTTNTTTCCCCANCCTTGGGGGCCTTGGGAAAAACCCNGGTTTAAAACCA 1086
                                                                                   

consensus_14346#2      -----------------------
consensus_14346#3      TACCAAAAAAAAAAAAAAAAAAA 303
consensus_14346#0      -----------------------
consensus_14346#1      TTCCNTTCNNCCCCTGGGTTC-- 1107