cluster # 1487

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Oryza sativa
cluster # 1487 cluster # 1487 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1487#0 length = 632 sequences # 1

consensus_1487#1 length = 608 sequences # 1

consensusID : consensus_1487#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [AATTCGGCACGAGGATCCGTAGTAAAATCGAACTAGAAATTTTTATATCAAAATGACGGATATATTAGTTGATGATCCAACATTAGGACAGCTAGGAACTGATATTCGAGTATTTGGAAAATGGAGTGGAGCTGATGTACAAATTTCGGATATGTCACTTGAAGATTATATTCTCGGTGCCAAACAGCCAAAATTTCTTCCACATTCAGCAGGTCGTTATCAAGTCAAACGTTTTCGTAAGGCTTCATGTCCAATTGTTGAACGTCTCGTCTGTTCACTTATGTTTCACGGACGTAATAATGGTAAAAAATTATTGGCTGTTCGTATTGTTCGACATACATTCGAAATTATTCATTTACTTACTGGCGAAAATCCACTTCAAGTACTCGTCAATGCTATNATCAACAGTGGACCACGTGAAGATTCCACACGTATTGGTCGTCAAGGTACCGTTCGACGACNAGCTGTCGATGTTTCACCATTACGACGTGTCAATCAGGCACTTTATTTACTCTGCACAGGTGCCCGAGATTCTGCATTCAAATCGGTTAAAACATTGCCGAATGTCTTGCCGATGAATTAATCAATGCTGCTAAAGGCTCATCAACATCTTTTGCAATTAAACGTAAAGA]

[+] EMBL CA753724             [AATTCGGCACGAGGATCCGTAGTAAAATCGAACTAGAAATTTTTATATCAAAATGACGGATATATTAGTTGATGATCCAACATTAGGACAGCTAGGAACTGATATTCGAGTATTTGGAAAATGGAGTGGAGCTGATGTACAAATTTCGGATATGTCACTTGAAGATTATATTCTCGGTGCCAAACAGCCAAAATTTCTTCCACATTCAGCAGGTCGTTATCAAGTCAAACGTTTTCGTAAGGCTTCATGTCCAATTGTTGAACGTCTCGTCTGTTCACTTATGTTTCACGGACGTAATAATGGTAAAAAATTATTGGCTGTTCGTATTGTTCGACATACATTCGAAATTATTCATTTACTTACTGGCGAAAATCCACTTCAAGTACTCGTCAATGCTATNATCAACAGTGGACCACGTGAAGATTCCACACGTATTGGTCGTCAAGGTACCGTTCGACGACNAGCTGTCGATGTTTCACCATTACGACGTGTCAATCAGGCACTTTATTTACTCTGCACAGGTGCCCGAGATTCTGCATTCAAATCGGTTAAAACATTGCCGAATGTCTTGCCGATGAATTAATCAATGCTGCTAAAGGCTCATCAACATCTTTTGCAATTAAACGTAAAGA]




>consensus_1487#0
AATTCGGCACGAGGATCCGTAGTAAAATCGAACTAGAAATTTTTATATCAAAATGACGGA
TATATTAGTTGATGATCCAACATTAGGACAGCTAGGAACTGATATTCGAGTATTTGGAAA
ATGGAGTGGAGCTGATGTACAAATTTCGGATATGTCACTTGAAGATTATATTCTCGGTGC
CAAACAGCCAAAATTTCTTCCACATTCAGCAGGTCGTTATCAAGTCAAACGTTTTCGTAA
GGCTTCATGTCCAATTGTTGAACGTCTCGTCTGTTCACTTATGTTTCACGGACGTAATAA
TGGTAAAAAATTATTGGCTGTTCGTATTGTTCGACATACATTCGAAATTATTCATTTACT
TACTGGCGAAAATCCACTTCAAGTACTCGTCAATGCTATNATCAACAGTGGACCACGTGA
AGATTCCACACGTATTGGTCGTCAAGGTACCGTTCGACGACNAGCTGTCGATGTTTCACC
ATTACGACGTGTCAATCAGGCACTTTATTTACTCTGCACAGGTGCCCGAGATTCTGCATT
CAAATCGGTTAAAACATTGCCGAATGTCTTGCCGATGAATTAATCAATGCTGCTAAAGGC
TCATCAACATCTTTTGCAATTAAACGTAAAGA

consensusID : consensus_1487#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [TCGATCTCCTTTTCGTGTGTGAAAAGAGAAAAATCAAATAACCATCATGACAGACTTCTTACAAACCGATAACCTTGCTTTGGAAACATCAGCAACCGATATCCGAGTTTTCGGCAAATGGAGTGGTGCCGATGTTCAAATTTCGGATATGTCACTCGAAGATTATATCTTAGGTGCAAAACAACCGAAATTTCTTCCTCATTCAGCTGGTCGTTATCAAGTGAAACGTTTTCGAAAAGCATCATGTCCAATTGTTGAACGTCTTGTTTGCTCACTTATGTTTCACGGACGTAACAATGGAAAGAAATTATTGGCTGTCCGAATTGTTCGTCATACATTTGAAATCATCCATTTACTTACAGGCGAAAACCCACTTCAAGTTCTTGTTAACGCTATTATTAATAGCGGACCACGTGAAGATTCAACACGTATTGGTCGTCAAGGTACAGTTCGACGACAAGCTGTCGATGTTTCGCCTTTACGACGAGTCAATCAAGCACTCTATTTACTCTGCACAGGTGCACGAGATTCAGCATTCAAATCAGTAAAAACCATTGCTGAATGTCTTGCTGATGAAACTTATCATGCCGCTAAAGGGTCGTCAACAT]

[+] EMBL CA758830             [TCGATCTCCTTTTCGTGTGTGAAAAGAGAAAAATCAAATAACCATCATGACAGACTTCTTACAAACCGATAACCTTGCTTTGGAAACATCAGCAACCGATATCCGAGTTTTCGGCAAATGGAGTGGTGCCGATGTTCAAATTTCGGATATGTCACTCGAAGATTATATCTTAGGTGCAAAACAACCGAAATTTCTTCCTCATTCAGCTGGTCGTTATCAAGTGAAACGTTTTCGAAAAGCATCATGTCCAATTGTTGAACGTCTTGTTTGCTCACTTATGTTTCACGGACGTAACAATGGAAAGAAATTATTGGCTGTCCGAATTGTTCGTCATACATTTGAAATCATCCATTTACTTACAGGCGAAAACCCACTTCAAGTTCTTGTTAACGCTATTATTAATAGCGGACCACGTGAAGATTCAACACGTATTGGTCGTCAAGGTACAGTTCGACGACAAGCTGTCGATGTTTCGCCTTTACGACGAGTCAATCAAGCACTCTATTTACTCTGCACAGGTGCACGAGATTCAGCATTCAAATCAGTAAAAACCATTGCTGAATGTCTTGCTGATGAAACTTATCATGCCGCTAAAGGGTCGTCAACAT]




>consensus_1487#1
TCGATCTCCTTTTCGTGTGTGAAAAGAGAAAAATCAAATAACCATCATGACAGACTTCTT
ACAAACCGATAACCTTGCTTTGGAAACATCAGCAACCGATATCCGAGTTTTCGGCAAATG
GAGTGGTGCCGATGTTCAAATTTCGGATATGTCACTCGAAGATTATATCTTAGGTGCAAA
ACAACCGAAATTTCTTCCTCATTCAGCTGGTCGTTATCAAGTGAAACGTTTTCGAAAAGC
ATCATGTCCAATTGTTGAACGTCTTGTTTGCTCACTTATGTTTCACGGACGTAACAATGG
AAAGAAATTATTGGCTGTCCGAATTGTTCGTCATACATTTGAAATCATCCATTTACTTAC
AGGCGAAAACCCACTTCAAGTTCTTGTTAACGCTATTATTAATAGCGGACCACGTGAAGA
TTCAACACGTATTGGTCGTCAAGGTACAGTTCGACGACAAGCTGTCGATGTTTCGCCTTT
ACGACGAGTCAATCAAGCACTCTATTTACTCTGCACAGGTGCACGAGATTCAGCATTCAA
ATCAGTAAAAACCATTGCTGAATGTCTTGCTGATGAAACTTATCATGCCGCTAAAGGGTC
GTCAACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1487#0      AATTCGGCACGAGGATCCGTAGTAAAATCGAACTAGAAATTTTTATATCAAAATGACGGA 60
consensus_1487#1      ---TCGATCTCCTTTTCGTGTGTGAAA---AGAGAAAAATCAAATAACCATCATGACAGA 54
                         ***         **    ** ***   *   * ****      * **  ***** **

consensus_1487#0      TATATTA---GTTGATGATCCAACATTAGGACAGCTAGGAACTGATATTCGAGTATTTGG 117
consensus_1487#1      CTTCTTACAAACCGATAACCTTGCTTTGGAAACATCAGCAACCGATATCCGAGTTTTCGG 114
                        * ***      *** * *   * ** * *     ** *** ***** ***** ** **

consensus_1487#0      AAAATGGAGTGGAGCTGATGTACAAATTTCGGATATGTCACTTGAAGATTATATTCTCGG 177
consensus_1487#1      CAAATGGAGTGGTGCCGATGTTCAAATTTCGGATATGTCACTCGAAGATTATATCTTAGG 174
                       *********** ** ***** ******************** ***********  * **

consensus_1487#0      TGCCAAACAGCCAAAATTTCTTCCACATTCAGCAGGTCGTTATCAAGTCAAACGTTTTCG 237
consensus_1487#1      TGCAAAACAACCGAAATTTCTTCCTCATTCAGCTGGTCGTTATCAAGTGAAACGTTTTCG 234
                      *** ***** ** *********** ******** ************** ***********

consensus_1487#0      TAAGGCTTCATGTCCAATTGTTGAACGTCTCGTCTGTTCACTTATGTTTCACGGACGTAA 297
consensus_1487#1      AAAAGCATCATGTCCAATTGTTGAACGTCTTGTTTGCTCACTTATGTTTCACGGACGTAA 294
                       ** ** *********************** ** ** ***********************

consensus_1487#0      TAATGGTAAAAAATTATTGGCTGTTCGTATTGTTCGACATACATTCGAAATTATTCATTT 357
consensus_1487#1      CAATGGAAAGAAATTATTGGCTGTCCGAATTGTTCGTCATACATTTGAAATCATCCATTT 354
                       ***** ** ************** ** ******** ******** ***** ** *****

consensus_1487#0      ACTTACTGGCGAAAATCCACTTCAAGTACTCGTCAATGCTATNATCAACAGTGGACCACG 417
consensus_1487#1      ACTTACAGGCGAAAACCCACTTCAAGTTCTTGTTAACGCTATTATTAATAGCGGACCACG 414
                      ****** ******** *********** ** ** ** ***** ** ** ** ********

consensus_1487#0      TGAAGATTCCACACGTATTGGTCGTCAAGGTACCGTTCGACGACNAGCTGTCGATGTTTC 477
consensus_1487#1      TGAAGATTCAACACGTATTGGTCGTCAAGGTACAGTTCGACGACAAGCTGTCGATGTTTC 474
                      ********* *********************** ********** ***************

consensus_1487#0      ACCATTACGACGTGTCAATCAGGCACTTTATTTACTCTGCACAGGTGCCCGAGATTCTGC 537
consensus_1487#1      GCCTTTACGACGAGTCAATCAAGCACTCTATTTACTCTGCACAGGTGCACGAGATTCAGC 534
                       ** ******** ******** ***** ******************** ******** **

consensus_1487#0      ATTCAAATCGGTTAAAAC-ATTGCCGAATGTCTTGCCGATGAATTAATCAATGCTGCTAA 596
consensus_1487#1      ATTCAAATCAGTAAAAACCATTGCTGAATGTCTTGCTGATGAAACTTATCATGCCGCTAA 594
                      ********* ** ***** ***** *********** ******       **** *****

consensus_1487#0      AGGCTCATCAACATCTTTTGCAATTAAACGTAAAGA 632
consensus_1487#1      AGGGTCGTCAACAT---------------------- 608
                      *** ** *******