Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1537 cluster # 1537       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1537#0 length = 3179 sequences # 1  
 consensus_1537#1 length = 593 sequences # 1  
consensusID : consensus_1537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 3179
fasta sequence 
                              [CACACAGTGAACCAGCATCTCACACTGCAGCTAATCAATCACTTAGCCATGCTCATGCGTCATCCGACCATCGCCGCCGCCGCCGCCGCCGCCGCCTCCATCCTCCTCCTCATGATCGCCGCCGATGGCCAGGCGGCGACGACGACACCGCCATCACCACCACCTGCAGCCATCGGCAACTACTGCAAACCGCGCGAGAGAGACGCGCTGCTGGCGTTCAAGGAAGGCGTCACCGACGACCCTGCAGGCCTCCTCGCCTCTTGGCGACGAGGTGGCGGTCAGCTGCAGGAGGATTGCTGCCAATGGCGAGGCGTCCGGTGCAGCAACCGCACCGGCCATGTCGTCAAGCTCCGCCTCCGCAACGACCACGCCGGAACAGCGCTGGCCGGCGAGATAGGCCAGTCTCTGATCTCGCTGGAGCATCTCAGGTACCTCGATCTCAGCATGAACAACCTTGCAGGTTCCACTGGACATGTCCCTGAGTTCTTGGGCTCTTTCAGAAGCCTGAGATATCTGAATTTATCTGGGATAGTGTTCTCCGGCATGGTGCCGCCTCAGCTCGGTAACCTTTCGAACTTGCGATATCTCGATCTCTCCAGGATAAGATTATCCGGCATGGTTCCATTTCTGTACATTAATGATGGTTCATGGTTAGCACACTTGTCCAATTTGCAATATCTGAAACTTGATGGGGTAAACCTTAGCACAGTAGTTGATTGGCCACATGTTCTGAACATGATCCCTTCTCTGAAGATTGTTAGCCTTTCTTCTTGCTCACTTCAGAGTGCAAACCAGTCTCTCCCAGAGCTTAGTTTCAAGGAACTTGAGATGCTTGATCTTTCCAACAATGATTTTAACCACCCAGCTGAGTCTAGTTGGATTTGGAACCTGACATCTCTCAAGCATCTCAATCTTAGCTCGACTAGTTTGTACGGTGATATTCCGCAAGCGCTAGGAAACATGCTGTCCCTCCAAGTTCTTGATTTCTCATTTGATGATCATAAGGATAGCATGGGCATGAGCGTGTCGAAAAATGGCAAGATGGGCACCATGAAAGCAAACTTGAAGAATCTATGCAATTTGGAAGTTCTAGACCTCGATTGTAGGCTAGAATATGGAAATATTATGGATATATTTCAGAGTTTGCCACAGTGTTCACCCAGCAAACTGAAGGAAGTTCATTTGGCTGGCAACAGTTTAACCGGGATGCTACCAAATTGGATTGGAAGGCTAACAAGCTTAGTCACTCTTGACCTCTTCAATAACAGCACCACTGGACAGGTGCCTTCTGAAATAGGTATGCTCACAAATCTGAGGAATTTGTACCTACATTTCAATAACATGAGTGGTACCATCACAGAGAAGCACTTTGCGCACCTGACGAGCTTGAAGTCGATATATTTGTGTTACAATCATTTGAAGATTGTGATGGATCCTCAGTGGTTACCTCCCTTCAAATTAGAGAAGGCTTACTTTGCATCTATTACGATGGGCCCCCCATTTCCTAGATGGCTTCAATCACAGGTTGATATTGTCGCACTTGCTATGAATGATGCAGGCATAAATGATACATTCCCAGACTGGTTCTCTACAACCTTTTCAAAGGCCAAGTTGTTGGAATTTCCCGGTAATCAAATCAGTGGTGGATTGCCAACAAATATGGAAAACATGTCATTGGAAAAATTATATCTGAAATCGAACCAAATAGCGGGTCTGATTCCTCGCATGCCGCGAAACCTCACTACATTAGATTTATCAAACAACTCATTGTCAGGACCTCTGCCACTAAATATTGGATCTCCAAAACTAGCTGAGTTGAATCTGTTATCCAACCGTATCACCGGGAATGTTCCACAATCTATTTGTGAACTGCAGAATTTACATGGCCTAGACTTATCCAACAATCTACTTGACGGAGAGTTTCCTCAATGTTCTGGGATGAGCATGATGTCATTTTTTCGTCTGAGTAACAACAGCTTTTCTGGCAACTTCCCATCTTTTCTTCAGGGTTGGACAGAGTTAAGCTTCCTTGATCTTTCATGGAATAAGTTCTCTGGGAATTTGCCTACATGGATTGGAAATTTCAGCAAGCTAGAAATTCTGCGGCTTAAGCATAACATGTTCTCTGGAAATATTCCTGCCAGCATCACCAAACTTGGAAATCTTTCTCATTTGGATCTTGCTAGCAATAGTATATCAGGTCCCCTGCCTCAGTATTTGGCAAATTTGACAGGAATGGTTCCGAAGCAATATTATACGAACGAGCATGAAGAGAGACTATCTGGATGTGACTACAAATCTCTTGTGACCATGAAGGGGCTGGAACTTGAGTATGATGAAGAAAATGTAACTGTGGTGACCATTGATTTGTCCTCAAATCTTTTGACCGGTGTGATTCCTGAAGACATTACTTATCTTCATAGATTGATAAATCTGAATCTATCGAGTAACTATTTGAGTGGAAAAATTCCATATTCGATTGGGAACATGCAGTCATTGGAATCGCTCGACCTCTCGAAGAACATGCTCTATGGTGAAATCCCACAAAGTTTGTCTGATTTATCGTCTTTAAGTTTTCTGAACCTATCTTATAACAATCTTGTGGGAGGAATACCATCAGGGACACAACTTGGCACCCTCTATGATCAAAACCATCATCTGTATGATGGCAATGATGGTCTTTGTGGGCCTCCTCTCCAAAAAAGCTGTTATAAAAGCGATGCATCAGAGCAAGGTCACCTGATGAGAAGTAAACAAGGTTTTGACATAGGGCCATTTTCCATTGGAGTTGTGATGGGATTTATGGCAGGTCTCTGGATTGTCTTCTATGCCCTTTTGTTCAGGAAATCTTGGAGGGTTGCTTACTTCTGTCTCTTGGACAAGGTGTATGATGAGGTTTGTGTGATTGCGGTTGTTGGTTGGGCAAGATTGACAGGAAGAACAGATCCGAGATTGCTGATGTCGCATGTCTCATGGTCATCCATCGACTCTGACGAATCCTATGAATAGATGAAGATGAAAAAGCTGAAGCAGGTGTAAGACTATTAGTTGGGTTGTATATTTTGTCATGTATGGAGCTTATTAGAGCAAGTACCCTAAATGCATATGATGCATAGATCTACAATGATGTGTATATATCTGTTTGTACTGGTACAGTTGTGTAGTGTGTCAGAAATCAC]

[+] EMBL AK119422             [CACACAGTGAACCAGCATCTCACACTGCAGCTAATCAATCACTTAGCCATGCTCATGCGTCATCCGACCATCGCCGCCGCCGCCGCCGCCGCCGCCTCCATCCTCCTCCTCATGATCGCCGCCGATGGCCAGGCGGCGACGACGACACCGCCATCACCACCACCTGCAGCCATCGGCAACTACTGCAAACCGCGCGAGAGAGACGCGCTGCTGGCGTTCAAGGAAGGCGTCACCGACGACCCTGCAGGCCTCCTCGCCTCTTGGCGACGAGGTGGCGGTCAGCTGCAGGAGGATTGCTGCCAATGGCGAGGCGTCCGGTGCAGCAACCGCACCGGCCATGTCGTCAAGCTCCGCCTCCGCAACGACCACGCCGGAACAGCGCTGGCCGGCGAGATAGGCCAGTCTCTGATCTCGCTGGAGCATCTCAGGTACCTCGATCTCAGCATGAACAACCTTGCAGGTTCCACTGGACATGTCCCTGAGTTCTTGGGCTCTTTCAGAAGCCTGAGATATCTGAATTTATCTGGGATAGTGTTCTCCGGCATGGTGCCGCCTCAGCTCGGTAACCTTTCGAACTTGCGATATCTCGATCTCTCCAGGATAAGATTATCCGGCATGGTTCCATTTCTGTACATTAATGATGGTTCATGGTTAGCACACTTGTCCAATTTGCAATATCTGAAACTTGATGGGGTAAACCTTAGCACAGTAGTTGATTGGCCACATGTTCTGAACATGATCCCTTCTCTGAAGATTGTTAGCCTTTCTTCTTGCTCACTTCAGAGTGCAAACCAGTCTCTCCCAGAGCTTAGTTTCAAGGAACTTGAGATGCTTGATCTTTCCAACAATGATTTTAACCACCCAGCTGAGTCTAGTTGGATTTGGAACCTGACATCTCTCAAGCATCTCAATCTTAGCTCGACTAGTTTGTACGGTGATATTCCGCAAGCGCTAGGAAACATGCTGTCCCTCCAAGTTCTTGATTTCTCATTTGATGATCATAAGGATAGCATGGGCATGAGCGTGTCGAAAAATGGCAAGATGGGCACCATGAAAGCAAACTTGAAGAATCTATGCAATTTGGAAGTTCTAGACCTCGATTGTAGGCTAGAATATGGAAATATTATGGATATATTTCAGAGTTTGCCACAGTGTTCACCCAGCAAACTGAAGGAAGTTCATTTGGCTGGCAACAGTTTAACCGGGATGCTACCAAATTGGATTGGAAGGCTAACAAGCTTAGTCACTCTTGACCTCTTCAATAACAGCACCACTGGACAGGTGCCTTCTGAAATAGGTATGCTCACAAATCTGAGGAATTTGTACCTACATTTCAATAACATGAGTGGTACCATCACAGAGAAGCACTTTGCGCACCTGACGAGCTTGAAGTCGATATATTTGTGTTACAATCATTTGAAGATTGTGATGGATCCTCAGTGGTTACCTCCCTTCAAATTAGAGAAGGCTTACTTTGCATCTATTACGATGGGCCCCCCATTTCCTAGATGGCTTCAATCACAGGTTGATATTGTCGCACTTGCTATGAATGATGCAGGCATAAATGATACATTCCCAGACTGGTTCTCTACAACCTTTTCAAAGGCCAAGTTGTTGGAATTTCCCGGTAATCAAATCAGTGGTGGATTGCCAACAAATATGGAAAACATGTCATTGGAAAAATTATATCTGAAATCGAACCAAATAGCGGGTCTGATTCCTCGCATGCCGCGAAACCTCACTACATTAGATTTATCAAACAACTCATTGTCAGGACCTCTGCCACTAAATATTGGATCTCCAAAACTAGCTGAGTTGAATCTGTTATCCAACCGTATCACCGGGAATGTTCCACAATCTATTTGTGAACTGCAGAATTTACATGGCCTAGACTTATCCAACAATCTACTTGACGGAGAGTTTCCTCAATGTTCTGGGATGAGCATGATGTCATTTTTTCGTCTGAGTAACAACAGCTTTTCTGGCAACTTCCCATCTTTTCTTCAGGGTTGGACAGAGTTAAGCTTCCTTGATCTTTCATGGAATAAGTTCTCTGGGAATTTGCCTACATGGATTGGAAATTTCAGCAAGCTAGAAATTCTGCGGCTTAAGCATAACATGTTCTCTGGAAATATTCCTGCCAGCATCACCAAACTTGGAAATCTTTCTCATTTGGATCTTGCTAGCAATAGTATATCAGGTCCCCTGCCTCAGTATTTGGCAAATTTGACAGGAATGGTTCCGAAGCAATATTATACGAACGAGCATGAAGAGAGACTATCTGGATGTGACTACAAATCTCTTGTGACCATGAAGGGGCTGGAACTTGAGTATGATGAAGAAAATGTAACTGTGGTGACCATTGATTTGTCCTCAAATCTTTTGACCGGTGTGATTCCTGAAGACATTACTTATCTTCATAGATTGATAAATCTGAATCTATCGAGTAACTATTTGAGTGGAAAAATTCCATATTCGATTGGGAACATGCAGTCATTGGAATCGCTCGACCTCTCGAAGAACATGCTCTATGGTGAAATCCCACAAAGTTTGTCTGATTTATCGTCTTTAAGTTTTCTGAACCTATCTTATAACAATCTTGTGGGAGGAATACCATCAGGGACACAACTTGGCACCCTCTATGATCAAAACCATCATCTGTATGATGGCAATGATGGTCTTTGTGGGCCTCCTCTCCAAAAAAGCTGTTATAAAAGCGATGCATCAGAGCAAGGTCACCTGATGAGAAGTAAACAAGGTTTTGACATAGGGCCATTTTCCATTGGAGTTGTGATGGGATTTATGGCAGGTCTCTGGATTGTCTTCTATGCCCTTTTGTTCAGGAAATCTTGGAGGGTTGCTTACTTCTGTCTCTTGGACAAGGTGTATGATGAGGTTTGTGTGATTGCGGTTGTTGGTTGGGCAAGATTGACAGGAAGAACAGATCCGAGATTGCTGATGTCGCATGTCTCATGGTCATCCATCGACTCTGACGAATCCTATGAATAGATGAAGATGAAAAAGCTGAAGCAGGTGTAAGACTATTAGTTGGGTTGTATATTTTGTCATGTATGGAGCTTATTAGAGCAAGTACCCTAAATGCATATGATGCATAGATCTACAATGATGTGTATATATCTGTTTGTACTGGTACAGTTGTGTAGTGTGTCAGAAATCAC]




>consensus_1537#0
CACACAGTGAACCAGCATCTCACACTGCAGCTAATCAATCACTTAGCCATGCTCATGCGT
CATCCGACCATCGCCGCCGCCGCCGCCGCCGCCGCCTCCATCCTCCTCCTCATGATCGCC
GCCGATGGCCAGGCGGCGACGACGACACCGCCATCACCACCACCTGCAGCCATCGGCAAC
TACTGCAAACCGCGCGAGAGAGACGCGCTGCTGGCGTTCAAGGAAGGCGTCACCGACGAC
CCTGCAGGCCTCCTCGCCTCTTGGCGACGAGGTGGCGGTCAGCTGCAGGAGGATTGCTGC
CAATGGCGAGGCGTCCGGTGCAGCAACCGCACCGGCCATGTCGTCAAGCTCCGCCTCCGC
AACGACCACGCCGGAACAGCGCTGGCCGGCGAGATAGGCCAGTCTCTGATCTCGCTGGAG
CATCTCAGGTACCTCGATCTCAGCATGAACAACCTTGCAGGTTCCACTGGACATGTCCCT
GAGTTCTTGGGCTCTTTCAGAAGCCTGAGATATCTGAATTTATCTGGGATAGTGTTCTCC
GGCATGGTGCCGCCTCAGCTCGGTAACCTTTCGAACTTGCGATATCTCGATCTCTCCAGG
ATAAGATTATCCGGCATGGTTCCATTTCTGTACATTAATGATGGTTCATGGTTAGCACAC
TTGTCCAATTTGCAATATCTGAAACTTGATGGGGTAAACCTTAGCACAGTAGTTGATTGG
CCACATGTTCTGAACATGATCCCTTCTCTGAAGATTGTTAGCCTTTCTTCTTGCTCACTT
CAGAGTGCAAACCAGTCTCTCCCAGAGCTTAGTTTCAAGGAACTTGAGATGCTTGATCTT
TCCAACAATGATTTTAACCACCCAGCTGAGTCTAGTTGGATTTGGAACCTGACATCTCTC
AAGCATCTCAATCTTAGCTCGACTAGTTTGTACGGTGATATTCCGCAAGCGCTAGGAAAC
ATGCTGTCCCTCCAAGTTCTTGATTTCTCATTTGATGATCATAAGGATAGCATGGGCATG
AGCGTGTCGAAAAATGGCAAGATGGGCACCATGAAAGCAAACTTGAAGAATCTATGCAAT
TTGGAAGTTCTAGACCTCGATTGTAGGCTAGAATATGGAAATATTATGGATATATTTCAG
AGTTTGCCACAGTGTTCACCCAGCAAACTGAAGGAAGTTCATTTGGCTGGCAACAGTTTA
ACCGGGATGCTACCAAATTGGATTGGAAGGCTAACAAGCTTAGTCACTCTTGACCTCTTC
AATAACAGCACCACTGGACAGGTGCCTTCTGAAATAGGTATGCTCACAAATCTGAGGAAT
TTGTACCTACATTTCAATAACATGAGTGGTACCATCACAGAGAAGCACTTTGCGCACCTG
ACGAGCTTGAAGTCGATATATTTGTGTTACAATCATTTGAAGATTGTGATGGATCCTCAG
TGGTTACCTCCCTTCAAATTAGAGAAGGCTTACTTTGCATCTATTACGATGGGCCCCCCA
TTTCCTAGATGGCTTCAATCACAGGTTGATATTGTCGCACTTGCTATGAATGATGCAGGC
ATAAATGATACATTCCCAGACTGGTTCTCTACAACCTTTTCAAAGGCCAAGTTGTTGGAA
TTTCCCGGTAATCAAATCAGTGGTGGATTGCCAACAAATATGGAAAACATGTCATTGGAA
AAATTATATCTGAAATCGAACCAAATAGCGGGTCTGATTCCTCGCATGCCGCGAAACCTC
ACTACATTAGATTTATCAAACAACTCATTGTCAGGACCTCTGCCACTAAATATTGGATCT
CCAAAACTAGCTGAGTTGAATCTGTTATCCAACCGTATCACCGGGAATGTTCCACAATCT
ATTTGTGAACTGCAGAATTTACATGGCCTAGACTTATCCAACAATCTACTTGACGGAGAG
TTTCCTCAATGTTCTGGGATGAGCATGATGTCATTTTTTCGTCTGAGTAACAACAGCTTT
TCTGGCAACTTCCCATCTTTTCTTCAGGGTTGGACAGAGTTAAGCTTCCTTGATCTTTCA
TGGAATAAGTTCTCTGGGAATTTGCCTACATGGATTGGAAATTTCAGCAAGCTAGAAATT
CTGCGGCTTAAGCATAACATGTTCTCTGGAAATATTCCTGCCAGCATCACCAAACTTGGA
AATCTTTCTCATTTGGATCTTGCTAGCAATAGTATATCAGGTCCCCTGCCTCAGTATTTG
GCAAATTTGACAGGAATGGTTCCGAAGCAATATTATACGAACGAGCATGAAGAGAGACTA
TCTGGATGTGACTACAAATCTCTTGTGACCATGAAGGGGCTGGAACTTGAGTATGATGAA
GAAAATGTAACTGTGGTGACCATTGATTTGTCCTCAAATCTTTTGACCGGTGTGATTCCT
GAAGACATTACTTATCTTCATAGATTGATAAATCTGAATCTATCGAGTAACTATTTGAGT
GGAAAAATTCCATATTCGATTGGGAACATGCAGTCATTGGAATCGCTCGACCTCTCGAAG
AACATGCTCTATGGTGAAATCCCACAAAGTTTGTCTGATTTATCGTCTTTAAGTTTTCTG
AACCTATCTTATAACAATCTTGTGGGAGGAATACCATCAGGGACACAACTTGGCACCCTC
TATGATCAAAACCATCATCTGTATGATGGCAATGATGGTCTTTGTGGGCCTCCTCTCCAA
AAAAGCTGTTATAAAAGCGATGCATCAGAGCAAGGTCACCTGATGAGAAGTAAACAAGGT
TTTGACATAGGGCCATTTTCCATTGGAGTTGTGATGGGATTTATGGCAGGTCTCTGGATT
GTCTTCTATGCCCTTTTGTTCAGGAAATCTTGGAGGGTTGCTTACTTCTGTCTCTTGGAC
AAGGTGTATGATGAGGTTTGTGTGATTGCGGTTGTTGGTTGGGCAAGATTGACAGGAAGA
ACAGATCCGAGATTGCTGATGTCGCATGTCTCATGGTCATCCATCGACTCTGACGAATCC
TATGAATAGATGAAGATGAAAAAGCTGAAGCAGGTGTAAGACTATTAGTTGGGTTGTATA
TTTTGTCATGTATGGAGCTTATTAGAGCAAGTACCCTAAATGCATATGATGCATAGATCT
ACAATGATGTGTATATATCTGTTTGTACTGGTACAGTTGTGTAGTGTGTCAGAAATCAC

consensusID : consensus_1537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence 
                              [AGTGTGAAGTAACATCACAGTATCGCACAGACACAGCAGCTAATCACTTGGCCGGCCGACCATGAGTACGGCCATTATCATCGTCTCCACCACCACCTCCTCCTCCTTCTTCTTCTTCTTCCTCCTCCTCATGATCACTACCGGCGGCGGCTGCAAACCGCGGGAGAGAGACGCTCTGCTGGCGTTCAAGGAAGGCATCGTCAAGGATCCTGCAGGCCTCCTCTCCTCCTGGCAAAGAGGAGGCCACTATGATGATGATGATGATCAGCTGCTGGAAGAGGATTGTTGCCAATGGAGAGGCGTCCGGTGCAGCAACCTCACCGGCCATGTCGTCAAGCTCAACCTCCGAAACGATTACGCCGACGACGTTGGAACAGCGCTGGTCGGCGAGATAGGCCATTCTCTGATCTCGCTGGAGCATCTCAGGTACCTTGATCTCAGCATGAACAACCTGGCAGGTCCAACTGGACATGTCCCTGAGTTCTTGGGCTCTTTCAGAAGATTGAGATATCTGAATCTATCTGGTATAGCGTTCTCCGGCATGGTGCCGCCTCAGCTCGGTAATCTTTCGAATCTGAAATTTCTCGACTTCT]

[+] EMBL CB632598             [AGTGTGAAGTAACATCACAGTATCGCACAGACACAGCAGCTAATCACTTGGCCGGCCGACCATGAGTACGGCCATTATCATCGTCTCCACCACCACCTCCTCCTCCTTCTTCTTCTTCTTCCTCCTCCTCATGATCACTACCGGCGGCGGCTGCAAACCGCGGGAGAGAGACGCTCTGCTGGCGTTCAAGGAAGGCATCGTCAAGGATCCTGCAGGCCTCCTCTCCTCCTGGCAAAGAGGAGGCCACTATGATGATGATGATGATCAGCTGCTGGAAGAGGATTGTTGCCAATGGAGAGGCGTCCGGTGCAGCAACCTCACCGGCCATGTCGTCAAGCTCAACCTCCGAAACGATTACGCCGACGACGTTGGAACAGCGCTGGTCGGCGAGATAGGCCATTCTCTGATCTCGCTGGAGCATCTCAGGTACCTTGATCTCAGCATGAACAACCTGGCAGGTCCAACTGGACATGTCCCTGAGTTCTTGGGCTCTTTCAGAAGATTGAGATATCTGAATCTATCTGGTATAGCGTTCTCCGGCATGGTGCCGCCTCAGCTCGGTAATCTTTCGAATCTGAAATTTCTCGACTTCT]




>consensus_1537#1
AGTGTGAAGTAACATCACAGTATCGCACAGACACAGCAGCTAATCACTTGGCCGGCCGAC
CATGAGTACGGCCATTATCATCGTCTCCACCACCACCTCCTCCTCCTTCTTCTTCTTCTT
CCTCCTCCTCATGATCACTACCGGCGGCGGCTGCAAACCGCGGGAGAGAGACGCTCTGCT
GGCGTTCAAGGAAGGCATCGTCAAGGATCCTGCAGGCCTCCTCTCCTCCTGGCAAAGAGG
AGGCCACTATGATGATGATGATGATCAGCTGCTGGAAGAGGATTGTTGCCAATGGAGAGG
CGTCCGGTGCAGCAACCTCACCGGCCATGTCGTCAAGCTCAACCTCCGAAACGATTACGC
CGACGACGTTGGAACAGCGCTGGTCGGCGAGATAGGCCATTCTCTGATCTCGCTGGAGCA
TCTCAGGTACCTTGATCTCAGCATGAACAACCTGGCAGGTCCAACTGGACATGTCCCTGA
GTTCTTGGGCTCTTTCAGAAGATTGAGATATCTGAATCTATCTGGTATAGCGTTCTCCGG
CATGGTGCCGCCTCAGCTCGGTAATCTTTCGAATCTGAAATTTCTCGACTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1537#0      -----CACACAGTGAACCAGCATCTCACAC-TGCAGCTAATCAATCACTTAGCCATGCTC 54
consensus_1537#1      AGTGTGAAGTAACATCACAGTATCGCACAGACACAGC-AGCTAATCACTTGGCCG-GCCG 58
                            *   *      *** *** ****    **** *   ******** ***  **  

consensus_1537#0      ATGCGTCATCCGACCATCGCCGCCGCCGCCGCCGCCGCCGCCTCCATCCTCCTCCTCATG 114
consensus_1537#1      ACCATGAGTACGGCCATTATCATCGTCTCCACCACCACCTCCTCCTCCTTCTTCTTCTTC 118
                      *       * ** ****   *  ** * ** ** ** ** *****  * ** ** ** * 

consensus_1537#0      ATCGCCGCCGATGGCCAGGCGGCGACGACGACACCGCCATCACCACCACCTGCAGCCATC 174
consensus_1537#1      TTCCTCCT--------------------------CCTCATGATCACTAC----------C 142
                       **  *                            *  *** * *** **          *

consensus_1537#0      GGCAACTACTGCAAACCGCGCGAGAGAGACGCGCTGCTGGCGTTCAAGGAAGGCGTCACC 234
consensus_1537#1      GGCGGCGGCTGCAAACCGCGGGAGAGAGACGCTCTGCTGGCGTTCAAGGAAGGCATCGTC 202
                      ***  *  ************ *********** ********************* **  *

consensus_1537#0      GACGACCCTGCAGGCCTCCTCGCCTCTTGGCGACGAGGTGGC------------------ 276
consensus_1537#1      AAGGATCCTGCAGGCCTCCTCTCCTCCTGGCAAAGAGGAGGCCACTATGATGATGATGAT 262
                       * ** *************** **** **** * **** ***                  

consensus_1537#0      GGTCAGCTGC---AGGAGGATTGCTGCCAATGGCGAGGCGTCCGGTGCAGCAACCGCACC 333
consensus_1537#1      GATCAGCTGCTGGAAGAGGATTGTTGCCAATGGAGAGGCGTCCGGTGCAGCAACCTCACC 322
                      * ********   * ******** ********* ********************* ****

consensus_1537#0      GGCCATGTCGTCAAGCTCCGCCTCCGCAACGACCACGCCG---------GAACAGCGCTG 384
consensus_1537#1      GGCCATGTCGTCAAGCTCAACCTCCGAAACGATTACGCCGACGACGTTGGAACAGCGCTG 382
                      ******************  ****** *****  ******         ***********

consensus_1537#0      GCCGGCGAGATAGGCCAGTCTCTGATCTCGCTGGAGCATCTCAGGTACCTCGATCTCAGC 444
consensus_1537#1      GTCGGCGAGATAGGCCATTCTCTGATCTCGCTGGAGCATCTCAGGTACCTTGATCTCAGC 442
                      * *************** ******************************** *********

consensus_1537#0      ATGAACAACCTTGCAGGTTCCACTGGACATGTCCCTGAGTTCTTGGGCTCTTTCAGAAGC 504
consensus_1537#1      ATGAACAACCTGGCAGGTCCAACTGGACATGTCCCTGAGTTCTTGGGCTCTTTCAGAAGA 502
                      *********** ****** * ************************************** 

consensus_1537#0      CTGAGATATCTGAATTTATCTGGGATAGTGTTCTCCGGCATGGTGCCGCCTCAGCTCGGT 564
consensus_1537#1      TTGAGATATCTGAATCTATCTGGTATAGCGTTCTCCGGCATGGTGCCGCCTCAGCTCGGT 562
                       ************** ******* **** *******************************

consensus_1537#0      AACCTTTCGAACTTGCGATATCTCGATCTCTCCAGGATAAGATTATCCGGCATGGTTCCA 624
consensus_1537#1      AATCTTTCGAATCTGAAATTTCTCGACTTCT----------------------------- 593
                      ** ********  **  ** ******  ***                             

consensus_1537#0      TTTCTGTACATTAATGATGGTTCATGGTTAGCACACTTGTCCAATTTGCAATATCTGAAA 684
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      CTTGATGGGGTAAACCTTAGCACAGTAGTTGATTGGCCACATGTTCTGAACATGATCCCT 744
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      TCTCTGAAGATTGTTAGCCTTTCTTCTTGCTCACTTCAGAGTGCAAACCAGTCTCTCCCA 804
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GAGCTTAGTTTCAAGGAACTTGAGATGCTTGATCTTTCCAACAATGATTTTAACCACCCA 864
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GCTGAGTCTAGTTGGATTTGGAACCTGACATCTCTCAAGCATCTCAATCTTAGCTCGACT 924
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      AGTTTGTACGGTGATATTCCGCAAGCGCTAGGAAACATGCTGTCCCTCCAAGTTCTTGAT 984
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      TTCTCATTTGATGATCATAAGGATAGCATGGGCATGAGCGTGTCGAAAAATGGCAAGATG 1044
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GGCACCATGAAAGCAAACTTGAAGAATCTATGCAATTTGGAAGTTCTAGACCTCGATTGT 1104
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      AGGCTAGAATATGGAAATATTATGGATATATTTCAGAGTTTGCCACAGTGTTCACCCAGC 1164
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      AAACTGAAGGAAGTTCATTTGGCTGGCAACAGTTTAACCGGGATGCTACCAAATTGGATT 1224
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GGAAGGCTAACAAGCTTAGTCACTCTTGACCTCTTCAATAACAGCACCACTGGACAGGTG 1284
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      CCTTCTGAAATAGGTATGCTCACAAATCTGAGGAATTTGTACCTACATTTCAATAACATG 1344
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      AGTGGTACCATCACAGAGAAGCACTTTGCGCACCTGACGAGCTTGAAGTCGATATATTTG 1404
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      TGTTACAATCATTTGAAGATTGTGATGGATCCTCAGTGGTTACCTCCCTTCAAATTAGAG 1464
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      AAGGCTTACTTTGCATCTATTACGATGGGCCCCCCATTTCCTAGATGGCTTCAATCACAG 1524
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GTTGATATTGTCGCACTTGCTATGAATGATGCAGGCATAAATGATACATTCCCAGACTGG 1584
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      TTCTCTACAACCTTTTCAAAGGCCAAGTTGTTGGAATTTCCCGGTAATCAAATCAGTGGT 1644
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GGATTGCCAACAAATATGGAAAACATGTCATTGGAAAAATTATATCTGAAATCGAACCAA 1704
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      ATAGCGGGTCTGATTCCTCGCATGCCGCGAAACCTCACTACATTAGATTTATCAAACAAC 1764
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      TCATTGTCAGGACCTCTGCCACTAAATATTGGATCTCCAAAACTAGCTGAGTTGAATCTG 1824
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      TTATCCAACCGTATCACCGGGAATGTTCCACAATCTATTTGTGAACTGCAGAATTTACAT 1884
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GGCCTAGACTTATCCAACAATCTACTTGACGGAGAGTTTCCTCAATGTTCTGGGATGAGC 1944
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      ATGATGTCATTTTTTCGTCTGAGTAACAACAGCTTTTCTGGCAACTTCCCATCTTTTCTT 2004
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      CAGGGTTGGACAGAGTTAAGCTTCCTTGATCTTTCATGGAATAAGTTCTCTGGGAATTTG 2064
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      CCTACATGGATTGGAAATTTCAGCAAGCTAGAAATTCTGCGGCTTAAGCATAACATGTTC 2124
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      TCTGGAAATATTCCTGCCAGCATCACCAAACTTGGAAATCTTTCTCATTTGGATCTTGCT 2184
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      AGCAATAGTATATCAGGTCCCCTGCCTCAGTATTTGGCAAATTTGACAGGAATGGTTCCG 2244
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      AAGCAATATTATACGAACGAGCATGAAGAGAGACTATCTGGATGTGACTACAAATCTCTT 2304
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GTGACCATGAAGGGGCTGGAACTTGAGTATGATGAAGAAAATGTAACTGTGGTGACCATT 2364
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GATTTGTCCTCAAATCTTTTGACCGGTGTGATTCCTGAAGACATTACTTATCTTCATAGA 2424
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      TTGATAAATCTGAATCTATCGAGTAACTATTTGAGTGGAAAAATTCCATATTCGATTGGG 2484
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      AACATGCAGTCATTGGAATCGCTCGACCTCTCGAAGAACATGCTCTATGGTGAAATCCCA 2544
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      CAAAGTTTGTCTGATTTATCGTCTTTAAGTTTTCTGAACCTATCTTATAACAATCTTGTG 2604
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GGAGGAATACCATCAGGGACACAACTTGGCACCCTCTATGATCAAAACCATCATCTGTAT 2664
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GATGGCAATGATGGTCTTTGTGGGCCTCCTCTCCAAAAAAGCTGTTATAAAAGCGATGCA 2724
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      TCAGAGCAAGGTCACCTGATGAGAAGTAAACAAGGTTTTGACATAGGGCCATTTTCCATT 2784
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GGAGTTGTGATGGGATTTATGGCAGGTCTCTGGATTGTCTTCTATGCCCTTTTGTTCAGG 2844
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      AAATCTTGGAGGGTTGCTTACTTCTGTCTCTTGGACAAGGTGTATGATGAGGTTTGTGTG 2904
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      ATTGCGGTTGTTGGTTGGGCAAGATTGACAGGAAGAACAGATCCGAGATTGCTGATGTCG 2964
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      CATGTCTCATGGTCATCCATCGACTCTGACGAATCCTATGAATAGATGAAGATGAAAAAG 3024
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      CTGAAGCAGGTGTAAGACTATTAGTTGGGTTGTATATTTTGTCATGTATGGAGCTTATTA 3084
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GAGCAAGTACCCTAAATGCATATGATGCATAGATCTACAATGATGTGTATATATCTGTTT 3144
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GTACTGGTACAGTTGTGTAGTGTGTCAGAAATCAC 3179
consensus_1537#1      -----------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)