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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 980 fasta sequence
[ATCCCTTCTCTCCAACTACCTCCTTCCCTCCTCCATCTCGACACCTCCTCCTCGTCTCCGGCCGCCGCTTCCCCCTCGCCGCCGGCGCCTCCTCGAGACCGTCGAGATCGAGATAGAGAGAGAGTGATGGGGTGGGCGACGCGGTTCCTGGCGGCGGTCTGCTTCTTCGCGGCGGGCGTCGTCTTCGCCCCCGACGTCCTCCTCGGCGCCCGCTCCGGCTCCGGCTCCGGCGGCGGCGCCGCCGCGGCCGCCAAGGTGGCCCACCTCCTCTGCTTCGCCACCTCATGGGGCGCCGCCCTCTGGGCCACCTTCATCGGCGGCATCATCATGTTCAAGAATCTGCCGAGGCACCAGTTCGGGAACCTGCAGGGGAAGTTGTTCCCGGCCTACTTCATGCTCATCTCCGCCTGCGCCGCCGTCTCCGTCGCCGCCTTCGCCTACCTCCACCCGTGGAAGACGGCGTCCACCGTCGAGCGCTACCAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACCCCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAG-A-GGGACCT-GAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGC-AAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTT-GCTAGCAAGCTTGAGATGTGAAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTAATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACGCATTTCTCGCCAGTTTATTATAAGTTCATGAACCAAAAAAAAAAAAAAA]
[+] EMBL AK060041 [ATCCCTTCTCTCCAACTACCTCCTTCCCTCCTCCATCTCGACACCTCCTCCTCGTCTCCGGCCGCCGCTTCCCCCTCGCCGCCGGCGCCTCCTCGAGACCGTCGAGATCGAGATAGAGAGAGAGTGATGGGGTGGGCGACGCGGTTCCTGGCGGCGGTCTGCTTCTTCGCGGCGGGCGTCGTCTTCGCCCCCGACGTCCTCCTCGGCGCCCGCTCCGGCTCCGGCTCCGGCGGCGGCGCCGCCGCGGCCGCCAAGGTGGCCCACCTCCTCTGCTTCGCCACCTCATGGGGCGCCGCCCTCTGGGCCACCTTCATCGGCGGCATCATCATGTTCAAGAATCTGCCGAGGCACCAGTTCGGGAACCTGCAGGGGAAGTTGTTCCCGGCCTACTTCATGCTCATCTCCGCCTGCGCCGCCGTCTCCGTCGCCGCCTTCGCCTACCTCCACCCGTGGAAGACGGCGTCCACCGTCGAGCGCTACCAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACCCCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAG A GGGACCT GAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGCAAAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTT GCTAGCAAGCTTGAGATGTGAAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTAATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACGCATTTCTCGCCAGTTTATTATAAGTTCATGAACC ]
[+] EMBL AK104114 [ CTTCCCTCCTCCATCTCGACACCTCCTCCTCGTCTCCGGCCGCCGCTTCCCCCTCGCCGCCGGCGCCTCCTCGAGACCGTCGAGATCGAGATAGAGAGAGAGTGATGGGGTGGGCGACGCGGTTCCTGGCGGCGGTCTGCTTCTTCGCGGCGGGCGTCGTCTTCGCCCCCGACGTCCTCCTCGGCGCCCGCTCCGGCTCCGGCTCCGGCGGCGGCGCCGCCGCGGCCGCCAAGGTGGCCCACCTCCTCTGCTTCGCCACCTCATGGGGCGCCGCCCTCTGGGCCACCTTCATCGGCGGCATCATCATGTTCAAGAATCTGCCGAGGCACCAGTTCGGGAACCTGCAGGGGAAGTTGTTCCCGGCCTACTTCATGCTCATCTCCGCCTGCGCCGCCGTCTCCGTCGCCGCCTTCGCCTACCTCCACCCGTGGAAGACGGCGTCCACCGTCGAGCGCTACCAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACCCCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAG A GGGACCT GAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGC AAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTT GCTAGCAAGCTTGAGATGTGAAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTAATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACGCATTTCTCGCCAGTTTATTATAAGTTCATGAACC ]
[+] EMBL AK101325 [ CCCTCCTCCATCTCGACACCTCCTCCTCGTCTCCGGCCGCCGCTTCCCCCTCGCCGCCGGCGCCTCCTCGAGACCGTCGAGATCGAGATAGAGAGAGAGTGATGGGGTGGGCGACGCGGTTCCTGGCGGCGGTCTGCTTCTTCGCGGCGGGCGTCGTCTTCGCCCCCGACGTCCTCCTCGGCGCCCGCTCCGGCTCCGGCTCCGGCGGCGGCGCCGCCGCGGCCGCCAAGGTGGCCCACCTCCTCTGCTTCGCCACCTCATGGGGCGCCGCCCTCTGGGCCACCTTCATCGGCGGCATCATCATGTTCAAGAATCTGCCGAGGCACCAGTTCGGGAACCTGCAGGGGAAGTTGTTCCCGGCCTACTTCATGCTCATCTCCGCCTGCGCCGCCGTCTCCGTCGCCGCCTTCGCCTACCTCCACCCGTGGAAGACGGCGTCCACCGTCGAGCGCTACCAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACCCCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAG A GGGACCT GAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGC AAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTT GCTAGCAAGCTTGAGATGTGAAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTAATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACGCATTTCTCGCCAGTTTATTATAAG ]
[-] EMBL AU032861 [ AGGTGGCCCACCTCCTCTGCTTCGCCACCTCATGGGGCGCCGCCCTCTGGGCCACCTTCATCGGCGGCATCATCATGTTCAAGAATCTGCCGAGGCACCAGTTCGGGAACCTGCAGGGGAAGTTGTTCCCGGCCTACTTCATGCTCATCTCCGCCTGCGCCGCCGTCTCCGTCGCCGCCTTCGCCTACCTCCACCCGTGGAAGACGGCGTCCACCGTCGAGCGCTACCAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACCCCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAGTAGGGGACCTGGAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGCAAAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTTGGCTAGCAAGCTTGAGATGTGAAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTAATGTGGCAAAG CTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACT ]
[-] EMBL BI799089 [ GCCCACCTCCTCTGCTTCGCCACCTCATGGGGCGCCGCCCTCTGGGCCACCTTCATCGGCGGCATCATCATGTTCAAGAATCTGCCGAGGCACCAGTTCGGGAACCTGCAGGGGAAGTTGTTCCCGGCCTACTTCATGCTCATCTCCGCCTGCGCCGCCGTCTCCGTCGCCGCCTTCGCCTACCTCCACCCGTGGAAGACGGCGTCCACCGTCGAGCGCTACCAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACCCCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAG A GGGACCT GAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGC AAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTT GCTAGCAAGCTTGAGATGTGAAGTGAACAAA A CCTTGAACAACATTCAGTTGAATCAGATCTGATTGGATCACAATA ]
[-] EMBL BI798851 [ ACCTCCTCTGCTTCGCCACCTCATGGGGCGCCGCGCTCTGGGCCACCTTCATCGGCGGCATCATCATGTTCAAGAATCTGCCGAGGCACCAGTTCGGGAACCTGCAGGGGAAGTTGTTCCCGGCCTACTTCATGCTCATCTCCGCCTGCGCCGCCGTCTCCGTCGCCGCCTTCGCCTACCTCCACCCGTGGAAGACGGCGTCCACCGTCGAGCGCTACCAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACCCCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAG A GGGACCT GAGCA TGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGC AAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAG TTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTT GCTAGCAAGCTTGAGATGTGAAGTGAACAAACACCCTTGAACAA ATTCAGTTGAATCAGATCTGATTG TCACAATATTAATGTGGGAAAGGCTCATTTGGAGAGCTTGCAAATATA TTACGTGT C ATG GTCGA TCGAGAGTAGTgg ]
[+] EMBL AU184474 [ TCTGCTTCGCCACCTCATGGGGCGCCGCCCTCTGGGCCACCTTCATCGGCGGCATCATCATGTTCAAGAATCTGCCGAGGCACCAGTTCGGGAACCTGCAGGGGAAGTTGTTCCCGGCCTACTTCATGCTCATCTCCGCCTGCGCCGCCGTCTCCGTCGCCGCCTTCGCCTACCTCCACCCGTGGAAGACGGCGTCCACCGTCGAGCGCTACCAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACCCCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAG A GGGACCT GAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGC AAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGG ]
[+] EMBL AU223360 [ GAAGACGGCGTCCACCGTCGAGCGCTACCAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACCCCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAG A GGGACCT GAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGC AAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTT GCTAGCAAGCTTGAGATGTGAAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTAATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACA ]
[+] EMBL AU184475 [ CCATCGAGATGATGAAGAAGAGGCNCAAGATTGAG A GGGACCT GAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGC AAAAAACAACCCTACCCTTGCCGCAATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTT GCTAGCAAGCTTGAGATGTGAAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTAATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACGCATTTCTCGCCAGTTTATTATAAGTTCATGACCCAAAAAAAAAAAA ]
[+] EMBL AU033117 [ CTACCCTTGCCGCAATCAACAATANGTTTGGGATGATCCACGGGCTCTCGTCTTTGNCCAACATCATGTTATTCGGCAGCCTAGCCATGCATTCCTGGTACCTT GCTAGCAAGCTTGAGATGTGAAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTAATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACGCATTTCTCGCCAGTTTATTATAAGTTCATGAACCAAAAA ]
[+] EMBL AU161864 [ GCATTCCTGGTCCCTT GCTAGCAAGCTTGAGATGTGAAGTGNACAANCACCCTTGACCAACATTCAGTTGAATNAGATCTGATTGCATNACAATATTAATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACGCATTTCTCGCCAGTTTATTATAAGTTCATGAACCAAAACTATTCAAAAA]
consensusID : consensus_15436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 931 fasta sequence
[TGCTTAAGTTGAGTTCAATTTCATTTCCAATCACACAGATTTGCTCTCTTCTTCTTCTTCCTCCATTCAATCTCTCGGAATCCGAACCCTAGCCTGGTAGGGTGGGGGCACGATGGGGTGGGCGGCGCGGTTCCTCACGGCAGTGTCCTTCCTCGCCGCCGGCGTGCTCTTCGCGCCGGACGCTCTCCTCGGTGGCTCCGGCCGCTCCGGCGCCGGGGTCGCGGCGGCGAGGCTGGCGCACGTCCTCTGCTTCGCCACCGCCTGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGCCTACTTCATGTTG-ATAT-CAGTATGCTCGGC-TATATCAGTGGCAGC-TTTTG-CGTATCTACATCCTT-GGAAGACGGCATCTACCATTGAGCGCTATCAGCTTGGATTCTTGATCTCCGCCCTTGGTTTTGACCTTTCCAACCTTCTGGTTTTCACGCCCATG-ACCACTGAGATGATGATGAGGCGGCACAAGATCGAGAAAGACCTCGGCATC-GGCAGCGAGGTCGGGTTTTCGAAGAACGCGGAGGTGGCGAGGACGAA-CCCAACGCTGGCGGCCATGAACAAGAAGTTCGGGATGATCCATGGCCTGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCGCCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCAT-GTCTCCATGTTCTGTGCCTCTGAGTTCTGAAGCTTGTTGCCGTAAGCTGCTGATCAAAAGTTGTATACTAGGTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAATAATTTGGAGAAATGATGTAAAAAAAAAAAAAAA]
[+] EMBL AK068515 [TGCTTAAGTTGAGTTCAATTTCATTTCCAATCACACAGATTTGCTCTCTTCTTCTTCTTCCTCCATTCAATCTCTCGGAATCCGAACCCTAGCCTGGTAGGGTGGGGGCACGATGGGGTGGGCGGCGCGGTTCCTCACGGCAGTGTCCTTCCTCGCCGCCGGCGTGCTCTTCGCGCCGGACGCTCTCCTCGGTGGCTCCGGCCGCTCCGGCGCCGGGGTCGCGGCGGCGAGGCTGGCGCACGTCCTCTGCTTCGCCACCGCCTGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGCCTACTTCATGTTG ATAT CAGTATGCTCGGC TATATCAGTGGCAGC TTTTG CGTATCTACATCCTT GGAAGACGGCATCTACCATTGAGCGCTATCAGCTTGGATTCTTGATCTCCGCCCTTGGTTTTGACCTTTCCAACCTTCTGGTTTTCACGCCCATG ACCACTGAGATGATGATGAGGCGGCACAAGATCGAGAAAGACCTCGGCATC GGCAGCGAGGTCGGGTTTTCGAAGAACGCGGAGGTGGCGAGGACGAA CCCAACGCTGGCGGCCATGAACAAGAAGTTCGGGATGATCCATGGCCTGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCGCCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCAT GTCTCCATGTTCTGTGCCTCTGAGTTCTGAAGCTTGTTGCCGTAAGCTGCTGATCAAAAGTTGTATACTAGGTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAATAATTTGGA ]
[+] EMBL AK106183 [ TTAAGTTGAGTTCAATTTCATTTCCAATCACACAGATTTGCTCTCTTCTTCTTCTTCCTCCATTCAATCTCTCGGAATCCGAACCCTAGCCTGGTAGGGTGGGGGCACGATGGGGTGGGCGGCGCGGTTCCTCACGGCAGTGTCCTTCCTCGCCGCCGGCGTGCTCTTCGCGCCGGACGCTCTCCTCGGTGGCTCCGGCCGCTCCGGCGCCGGGGTCGCGGCGGCGAGGCTGGCGCACGTCCTCTGCTTCGCCACCGCCTGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGCCTACTTCATGTTG ATAT CAGTATGCTCGGC TATATCAGTGGCAGC TTTTG CGTATCTACATCCTT GGAAGACGGCATCTACCATTGAGCGCTATCAGCTTGGATTCTTGATCTCCGCCCTTGGTTTTGACCTTTCCAACCTTCTGGTTTTCACGCCCATG ACCACTGAGATGATGATGAGGCGGCACAAGATCGAGAAAGACCTCGGCATC GGCAGCGAGGTCGGGTTTTCGAAGAACGCGGAGGTGGCGAGGACGAA CCCAACGCTGGCGGCCATGAACAAGAAGTTCGGGATGATCCATGGCCTGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCGCCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCAT GTCTCCATGTTCTGTGCCTCTGAGTTCTGAAGCTTGTTGCCGTAAGCTGCTGATCAAAAGTTGTATACTAGGTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAATAATTTGGAGA ]
[+] EMBL AK104131 [ TTGAGTTCAATTTCATTTCCAATCACACAGATTTGCTCTCTTCTTCTTCTTCCTCCATTCAATCTCTCGGAATCCGAACCCTAGCCTGGTAGGGTGGGGGCACGATGGGGTGGGCGGCGCGGTTCCTCACGGCAGTGTCCTTCCTCGCCGCCGGCGTGCTCTTCGCGCCGGACGCTCTCCTCGGTGGCTCCGGCCGCTCCGGCGCCGGGGTCGCGGCGGCGAGGCTGGCGCACGTCCTCTGCTTCGCCACCGCCTGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAA GGAAAATGTTCCCAGCCTACTTCATGTTG ATAT CAGTATGCTCGGC TATATCAGTGGCAGC TTTTG CGTATCTACATCCTT GGAAGACGGCATCTACCATTGAGCGCTATCAGCTTGGATTCTTGATCTCCGCCCTTGGTTTTGACCTTTCCAACCTTCTGGTTTTCACGCCCATG ACCACTGAGATGATGATGAGGCGGCACAAGATCGAGAAAGACCTCGGCATC GGCAGCGAGGTCGGGTTTTCGAAGAACGCGGAGGTGGCGAGGACGAA CCCAACGCTGGCGGCCATGAACAAGAAGTTCGGGATGATCCATGGCCTGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCGCCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCAT GTCTCCATGTTCTGTGCCTCTGAGTTCTGAAGCTTGTTGCCGTAAGCTGCTGATCAAAAGTTGTATACTAGGTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAA ]
[+] EMBL AU174493 [ CGGAATCCGAACCCTAGCCTGGTAGGGTGGGGGCACGATGGGGTGGGCGGCGCGGTTCCTCACGGCAGTGTCCTTCCTCGCCGCCGGCGTGCTCTTCGCGCCGGACGCTCTCCTCGGTGGCTCCGGCCGCTCCGGCGCCGGGGTCGCGGCGGCGAGGCTGGCGCACGTCCTCTGCTTCGCCACCGCCTGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGCCTACTTCATGTTG ATAT CAGTATGCTCGGC TATATCAGTGGCAGC TTTTG CGTATCTACATCCTT GGAAGACGGCATCTACCATTGAGCGCTATCAGCTTGGATTCTTGATCTCCGCCCTTGGTTTTGACCTTTCCAACCTTCTGGTTT ]
[+] EMBL AU070787 [ GGGTGGGCGGCGCGGTTCCTCACGGCAGTGTCCTTCCTCGCCGCCGG GTGCTCTTCGCGCCGGACGCTCTCCTCGGTGGCTCCGGCCGCTCCGGCGCCGGGGTCGCGGCGGCGAGGCTGGCGCACGTCCTCTGCTTCGCCACCGCCTGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTCAAGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGCCTACTTCATGTTG ATAT CAGTATGCTCGGC TATATCAGTGGCAGC TTTTG CGTATCTACATCCTT GGAAGACGGCATCTACCATTGAGCGCTATCAGCTTGGATTCTTGATCTCCGCCCTTGGTTTTGACCTTTCCAACCTTCTGGTTTTCACGCCCATGNACCACTGAGATGATGATGAGGCGGCACAAGATCGAGAAAGACCTCGGCATCGGGCAGCGAGGTCGGGTTTTCGAAGAACGCGGAGGTGGCGAGGACGAACCCCAACGCTGGCGGCCATGAACAAGAAGTTCGGGATGATCCATGGCCTGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCGCCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCNTCTCCCATAGTCTCCATGTNCTGTGCCTCTGA ]
[+] EMBL D42533 [ CGGCATCGTCATGTTCAAGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGCCTACTTCATGTTG ATAT CAGTATGCTCGGC TATATCAGTGGCAGC TTTTG CGTATCTACATCCTT NGAAGACGGCATCTACCATTGAGCGCTATCAGCTTG ]
[+] EMBL AU162579 [ TCATGTTGAATATNCAGTATGCTCGNCTTATATCAGTGGCAGCTTTTTGCCGTATC ACATCCTTGGGAAGACGGCATCTACCATTGAGCGCTATCAGCTTGGATTCTTGATCTCCGCCCTTGGTTTTGACCTTTCNAACNTTCTGGTTTTCACGCCCATG ACCACTGAGATGATGATGAGGCGGCACAAGATCGAGAAAGACCTCGGCATC GGCAGCGAGGTCGGGTTTTCGAAGAACGCGGAGGTGGCGAGGACGAA CCCAACGCTGGCGGCCATGAACAAGAAGTTCGGGATGATCCATGGCCTGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCGCCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCAT GTCTCCATGTTCTGTGCCTCTGAGTTCTGAAGCTTGTTGCCGTAAGCTGCTGATCAAAAGTTGTATACTAGGTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAATAATTTGGAGAAATGATGTAAAAAAAAAAAAAAA]
[+] EMBL AU174494 [ TTGGTTTTGACCTTTCCAACCTTCTGGTTTTCACGCCCATG ACCACTGAGATGATGATGAGGCGGCACAAGATCGAGAAAGACCTCGGCATC GGCAGCGAGGTCGGGTTTTCGAAGAACGCGGAGGTGGCGAGGACGAA CCCAACGCTGGCGGCCATGAACAAGAAGTTCGGGATGATCCATGGCCTGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCGCCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCAT GTCTCCATGTTCTGTGCCTCTGAGTTCTGAAGCTTGTTGCCGTAAGCTGCTGATCAAAAGTTGTATACTAGGTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAATAATTTGGAGAAATGATGTACAAAAAA ]
consensusID : consensus_15436#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[TAACNCCCATGACCACTGAGATGATGATGAGGCGGCACAAGATCGANAAAGACCTCGGCATCGGCAGCGAGGTCGGNTTTCGAAGAACGCGGAGGTGGCGAGGACGAACCCAACGCTGGCGGCCATGAACAAGAAGTTCGGGATGATCCATGGCCTGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCGCCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCATGTCTCCATGTTCTGTGCCTCTGAGTTCTGAAGCTTGTTGCCGTAAGCTGCTGATCAAAAGTTGTATACTAGGTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAATAATTTGGAGAAATGATGTACAGATCGCTGGGTGTTTGTTTTGATTTGTTTCAATGCATTACA]
[-] EMBL C28348 [TAACNCCCATGACCACTGAGATGATGATGAGGCGGCACAAGATCGANAAAGACCTCGGCATCGGCAGCGAGGTCGGNTTTCGAAGAACGCGGAGGTGGCGAGGACGAACCCAACGCTGGCGGCCATGAACAAGAAGTTCGGGATGATCCATGGCCTGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCGCCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCATGTCTCCATGTTCTGTGCCTCTGAGTTCTGAAGCTTGTTGCCGTAAGCTGCTGATCAAAAGTTGTATACTAGGTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAATAATTTGGAGAAATGATGTACAGATCGCTGGGTGTTTGTTTTGATTTGTTTCAATGCATTACA]
consensusID : consensus_15436#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[GCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTTGCTAGCAAGCTTGANATGTGAAGTGAACAAACNCCCTTGACCAACATTCAGTTGAATCAGATNTGATTGCATCCCAATATTAATGTGGCAAAGCCTCATTTGGANAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCNCNGCATTTNTCGCCAGTTTATTATAAGTTCATGAACCAAAACTATTCCCCCCTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU174238 [GCCAACATCATGTCATTCGGCAGCCTAGCCATGCATTCCTGGTACCTTGCTAGCAAGCTTGANATGTGAAGTGAACAAACNCCCTTGACCAACATTCAGTTGAATCAGATNTGATTGCATCCCAATATTAATGTGGCAAAGCCTCATTTGGANAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCNCNGCATTTNTCGCCAGTTTATTATAAGTTCATGAACCAAAACTATTCCCCCCTAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15436#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[TGTCAATTCNGCAGCCTAGCCATGCATCCCTGGTACCTTGCTAGCAANCTTTGAGATGTGNAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTNATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACGCATTTCTCGCCAGTGTATTATAAGTTCATGAACCAAAACTATTCAAACCCACGCGTCCGCCCACGCGTCNCNGNC]
[-] EMBL OSS15464A [TGTCAATTCNGCAGCCTAGCCATGCATCCCTGGTACCTTGCTAGCAANCTTTGAGATGTGNAGTGAACAAACACCCTTGACCAACATTCAGTTGAATCAGATCTGATTGCATCACAATATTNATGTGGCAAAGCCTCATTTGGAGAGCTTGCAAATATATTTACGTGTACAATGATTCGACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACGCATTTCTCGCCAGTGTATTATAAGTTCATGAACCAAAACTATTCAAACCCACGCGTCCGCCCACGCGTCNCNGNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 ATCCCTTCTCTCCAACTACCTCCTTCCCTCCTCCATCTCGACACCTCCTCCTCGTCTCCG 60
consensus_15436#1 ------------------------------------------------------------
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 GCCGCCGCTTCCCCCTCGCCGCCGGCGCCTCCTCGAGACCGTCGAGATCGAGATAGAGAG 120
consensus_15436#1 --------------------------------------------------TGCTTAAGTT 10
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 AGAGTGATGGGGTGGGCGACGCGGTTCCTGGCGGCGGTCTGCTTCTTCGCGGCGGGCGTC 180
consensus_15436#1 GAGTTCAATTTCATTTCCAATCACACAGATTTGCTCTCTTCTTCTTCTTCCTCCATTCAA 70
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 GTCTTCGCCCCCGACGTCCTCCTCGGCGCCCGCTCCGGCTCCGGCTCCGGCGGCGGCGCC 240
consensus_15436#1 TCTCTCGGAATCCGAACCCTAGCCTGGTAGGGTGGGGGCACGATGGGGTGGGCGGCGCGG 130
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 GCCGCGGCCGCCAAGGTGGCCCACCTCCTCTGCTTCGCCACCTCATGGGGCGCCGCCCTC 300
consensus_15436#1 TTCCTCACGGCAGTGTCCTTCCTCGCCGCCGGCGTGCTCTTCGCGCCGGACGCTCTCCTC 190
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 TGGGCCACCTTCATCGGCGGCATCATCATGTTCAAGAATCTGCCGAGGCACCAGTTCGGG 360
consensus_15436#1 GGTGGCTCCGGCCGCTCCGGCGCCGGGGTCGCGGCGGCGAGGCTGGCGCACGTCCTCTGC 250
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 AACCTGCAGGGGAAGTTGTTCCCGGCCTACTTCATGCTCATCTCCGCCTGCGCCGCCGTC 420
consensus_15436#1 TTCGCCACCGCCTGGGGCGCCGCGCTCTGGGTCACCTTCATCGGCGGCATCGTCATGTTC 310
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 TCCGTCGCCGCCTTCGCCTACCTCCACCCGTGGAAGACGGCGTCCACCGTCGAGCGCTAC 480
consensus_15436#1 AAGTATTTGCCAAGGCACCAGTTTGGGAGTCTACAAGGGAAAATGTTCCCAGCCTACTTC 370
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 CAGCTCGGCTTCCTCCTCGCCGCCCTTGGCTTCGACCTCTCCAACCTGCTCGTGTTCACC 540
consensus_15436#1 ATGTTGATATCAGTATGCTCGGCTATATCAGTGGCAGCTTTTGCGTATCTACATCCTTGG 430
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 CCCATGACCATCGAGATGATGAAGAAGAGGCACAAGATTGAGAGGGACCTGAGCATTGGT 600
consensus_15436#1 AAGACGGCATCTACCATTGAGCGCTATCAGCTTGGATTCTTGATCTCCGCCCTTGGTTTT 490
consensus_15436#2 ------------------------------------------------------------
consensus_15436#3 ------------------------------------------------------------
consensus_15436#4 ------------------------------------------------------------
consensus_15436#0 GAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGCAAAAAACAACCCTACCCTTGCCGCA 660
consensus_15436#1 GACCTTTCCAACCTTCTGGTTTTCACGCCCATGACCACTGAGATGATGATGAGGCGGCAC 550
consensus_15436#2 ----------------------TAACNCCCATGACCACTGAGATGATGATGAGGCGGCAC 38
consensus_15436#3 ------------------------------------------GCCAACATCATGTCA-TT 17
consensus_15436#4 ----------------------------------------------------TGTCAATT 8
consensus_15436#0 ATCAACAAGAAGTTTGGGATGATCCACGGGCTCTCGTCTTTGGCCAACATCATGTCA-TT 719
consensus_15436#1 AAGATCGAGAAAGACCTCGGCATCGGCAGCGAGGTCGGGTTTTCGAAGAACGCGGAGGTG 610
consensus_15436#2 AAGATCGANAAAGACCTCGGCATCGGCAGCGAGGTCGGNTTT-CGAAGAACGCGGAGGTG 97
* *
consensus_15436#3 CGGCAGCCTAGCCATGCATTCCTGGTACCTTGCTAGCAAGCTT-GANATGTGAAGTGAAC 76
consensus_15436#4 CNGCAGCCTAGCCATGCATCCCTGGTACCTTGCTAGCAANCTTTGAGATGTGNAGTGAAC 68
consensus_15436#0 CGGCAGCCTAGCCATGCATTCCTGGTACCTTGCTAGCAAGCTT-GAGATGTGAAGTGAAC 778
consensus_15436#1 GCGAGGACGAACCCAACGCTGGCGGC-CATGAACAAGAAGTTC-GGGATGATCCATGGCC 668
consensus_15436#2 GCGAGGACGAACCCAACGCTGGCGGC-CATGAACAAGAAGTTC-GGGATGATCCATGGCC 155
* * * * ** * ** * * * ** * * *** ** *
consensus_15436#3 AAACNCCCTTGACCAACATTCAG---TTGAATCAGATNTGATTGCA-TCCCAATATTAAT 132
consensus_15436#4 AAACACCCTTGACCAACATTCAG---TTGAATCAGATCTGATTGCA-TCACAATATTNAT 124
consensus_15436#0 AAACACCCTTGACCAACATTCAG---TTGAATCAGATCTGATTGCA-TCACAATATTAAT 834
consensus_15436#1 TGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCG 728
consensus_15436#2 TGTCGTCTCTGGCCAACATCATGGCGTTCGGTAGCCTTGCAATGCACTCCTGGTACCTCG 215
* * ** ******* * ** * * * **** ** **
consensus_15436#3 GTGGCAAAGCCTCATTTGGANAGC----TTGCAAAT---------ATATTTACGTGTACA 179
consensus_15436#4 GTGGCAAAGCCTCATTTGGAGAGC----TTGCAAAT---------ATATTTACGTGTACA 171
consensus_15436#0 GTGGCAAAGCCTCATTTGGAGAGC----TTGCAAAT---------ATATTTACGTGTACA 881
consensus_15436#1 CCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCATGTCTCCATGTTCT 788
consensus_15436#2 CCAGCAAGCTCCAGATCTGACGGCATCATCACCACTGCTTCTCCCATGTCTCCATGTTCT 275
**** * * ** ** * * * * ** * * * *** *
consensus_15436#3 ATGATTC---GACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCNCNGCATTTN 236
consensus_15436#4 ATGATTC---GACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACG-CATTTC 227
consensus_15436#0 ATGATTC---GACTCGAGATTAGTTGTACTTAAAATAATGTACAGAATCCACG-CATTTC 937
consensus_15436#1 GTGCCTCTGAGTTCTGAAGCTTGTTGC-CGTAAGCTGCTGATCAAAAGTTGTA-TACTAG 846
consensus_15436#2 GTGCCTCTGAGTTCTGAAGCTTGTTGC-CGTAAGCTGCTGATCAAAAGTTGTA-TACTAG 333
** ** * ** * **** * *** * ** ** ** * *
consensus_15436#3 TCGCCAGTTTATTATAAGTTCATGAACCAAAAC-TATTCCCCCCTAAAAAAAAAAAAAAA 295
consensus_15436#4 TCGCCAGTGTATTATAAGTTCATGAACCAAAAC-TATTCAAACCCACGCGTCCGCCCACG 286
consensus_15436#0 TCGCCAGTTTATTATAAGTTCATGAACCAAAAA-AAAAAAAAAA---------------- 980
consensus_15436#1 GTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAATAATTTGGA 906
consensus_15436#2 GTTTATGTAACAGATAAACTGATGAAGGAACTTGTGATAGAAACTTTGCAATAATTTGGA 393
** **** * ***** **
consensus_15436#3 AAAAAAAA---------------------------------------------- 303
consensus_15436#4 CGTCNCNGNC-------------------------------------------- 296
consensus_15436#0 ------------------------------------------------------
consensus_15436#1 GAAATGATGTAAAAAAAAAAAAAAA----------------------------- 931
consensus_15436#2 GAAATGATGTACAGATCGCTGGGTGTTTGTTTTGATTTGTTTCAATGCATTACA 447
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||