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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1487 fasta sequence
[CGTGTGTGGCCTATCTTTTCTTACTCTCTTGGAAGGAACATCAAATAAAAAGATCATCATCATTATAAACCTTTTAGTATCATCATCATGATGGCCTCCTCCTCTTCCTCCTCCAGCCTCTGTGATAATCATCTCTTGCAAGATGACCTGATCCCATGGCCTTCCATGCCCTTTGCTCCTGCTCCCAACACCTTTGGATTGAACCACCAATGGAGCCAGCCTCCAATGCTAAGCAGCAGTACTGATCAGTTAAGCTCATATGAGCTTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGTATTGCAAGCTCCACGAATAATAATAGTAATGTGATGATGAACGAGGAGGAGCTACGGCCACGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAGAAGCTGGCCGCCGGCGATGAGCCGCTGCAGATATGTTGCAAGAGGCAGGCTGCTGCTGCTGCAGTGGTCGGCCATAGCAGCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCCAACACCCTGCAGATGAAGAGGAATACGAATGCAGCAGCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCAACAGCGCTGCCGCCATCGTCAAAGAAGCCCCGGCTCGAGTCACACTCCTCCTCAATGCTTCCTTCATTCAAGGTAAGGAAAGAGAAACTAGGGGATAGAATTGCCGCCCTTCAGCAACTGGTCTCACCCTTTGGTAAGACTGATACCGCATCGGTACTCATGGAGGCCATCGGTTACATCAAATCTCTTCAGGACCAAGTTGAGACTTTGAGCGGTCCATACCTGAGATCATCCAAGAACAGCAAGAAATTAGCCTGCAGGGCAGCACAACAACAACGGAAGGGGACGTCAAATGGAGGGGACGCAGCAGCAAAGCTTGACCTCCGAAGTAGAGGACTCTGCCTGGTGCCCCTGTCGTGCACCTCCTACGTCACCAACGAGAATGGGGTTTGGCCTCCACCCAATTTCAGAGGAAACTGAACTAATCTATCACAGATTCATACTACTAGCTAGGAGTACTATACAACAATGTCAGCTCATCTAGCTAGCTAGCTACAGCAGATCCAACACACAAAGTTGTACTACTCATCAAACTGAGCAACATTACTGGACTCGGCTGGAGGATCTCAGTATCCGATTCCTCTGCTTTTGTCTGGTGTGTATGTCTCCTCTTTGTTAAGAATTTGGTCTTTGCTCAGGCACACATCATATAC]
[+] EMBL AK119493 [CGTGTGTGGCCTATCTTTTCTTACTCTCTTGGAAGGAACATCAAATAAAAAGATCATCATCATTATAAACCTTTTAGTATCATCATCATGATGGCCTCCTCCTCTTCCTCCTCCAGCCTCTGTGATAATCATCTCTTGCAAGATGACCTGATCCCATGGCCTTCCATGCCCTTTGCTCCTGCTCCCAACACCTTTGGATTGAACCACCAATGGAGCCAGCCTCCAATGCTAAGCAGCAGTACTGATCAGTTAAGCTCATATGAGCTTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGTATTGCAAGCTCCACGAATAATAATAGTAATGTGATGATGAACGAGGAGGAGCTACGGCCACGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAGAAGCTGGCCGCCGGCGATGAGCCGCTGCAGATATGTTGCAAGAGGCAGGCTGCTGCTGCTGCAGTGGTCGGCCATAGCAGCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCCAACACCCTGCAGATGAAGAGGAATACGAATGCAGCAGCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCAACAGCGCTGCCGCCATCGTCAAAGAAGCCCCGGCTCGAGTCACACTCCTCCTCAATGCTTCCTTCATTCAAGGTAAGGAAAGAGAAACTAGGGGATAGAATTGCCGCCCTTCAGCAACTGGTCTCACCCTTTGGTAAGACTGATACCGCATCGGTACTCATGGAGGCCATCGGTTACATCAAATCTCTTCAGGACCAAGTTGAGACTTTGAGCGGTCCATACCTGAGATCATCCAAGAACAGCAAGAAATTAGCCTGCAGGGCAGCACAACAACAACGGAAGGGGACGTCAAATGGAGGGGACGCAGCAGCAAAGCTTGACCTCCGAAGTAGAGGACTCTGCCTGGTGCCCCTGTCGTGCACCTCCTACGTCACCAACGAGAATGGGGTTTGGCCTCCACCCAATTTCAGAGGAAACTGAACTAATCTATCACAGATTCATACTACTAGCTAGGAGTACTATACAACAATGTCAGCTCATCTAGCTAGCTAGCTACAGCAGATCCAACACACAAAGTTGTACTACTCATCAAACTGAGCAACATTACTGGACTCGGCTGGAGGATCTCAGTATCCGATTCCTCTGCTTTTGTCTGGTGTGTATGTCTCCTCTTTGTTAAGAATTTGGTCTTTGCTCAGGCACACATCATATAC]
consensusID : consensus_1552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[CGGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTAATATCTGACTCGATTTTCTTAATTTCTCTCTTGATCAGAAGCAGCAGTACTGATCAGTTAAGCTCATATGAGCCTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGTATTGCAAGCTCCACGAATAATAATAGTAATGGGATGATGAACGAGGAGGAGCTACGGCCACGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAAAAGCTGGCCGCCGGCGATGAGCCGCCCCATATATTTTGCAAGAGGCAGGCTGCTGCTGCTGCAGTGGTCGGCCATAGCANCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCCAACACCCTACACATGCAGATNAAGAGGAATACGAATGCAGCATCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCAACAGCGCTG]
[+] EMBL CA760062 [CGGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTAATATCTGACTCGATTTTCTTAATTTCTCTCTTGATCAGAAGCAGCAGTACTGATCAGTTAAGCTCATATGAGCCTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGTATTGCAAGCTCCACGAATAATAATAGTAATGGGATGATGAACGAGGAGGAGCTACGGCCACGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAAAAGCTGGCCGCCGGCGATGAGCCGCCCCATATATTTTGCAAGAGGCAGGCTGCTGCTGCTGCAGTGGTCGGCCATAGCANCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCCAACACCCTACACATGCAGATNAAGAGGAATACGAATGCAGCATCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCAACAGCGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1552#0 CGTGTGTGGCCTATCTTTTCTTACTCTCTTGGAAGGAACATCAAATAAAAAGATCATCAT 60
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 CATTATAAACCTTTTAGTATCATCATCATGATGGCCTCCTCCTCTTCCTCCTCCAGCCTC 120
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 TGTGATAATCATCTCTTGCAAGATGACCTGATCCCATGGCCTTCCATGCCCTTTGCTCCT 180
consensus_1552#1 ----------------------------CGGCCGCTTTTTTTTTTTTTTTTTTTTTTTTT 32
* * * * ** * *** * *
consensus_1552#0 GCTCCCAACACCTTTGGATTGAACCACCAATGGAGCCAGCCTCCAATGCTAAGCAGCAGT 240
consensus_1552#1 TTAATTAATATCT---GACTCGATTTTC--TTAATTTCTCTCTTGATCAGAAGCAGCAGT 87
** * ** ** * * * * * * ** **********
consensus_1552#0 ACTGATCAGTTAAGCTCATATGAGCTTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCA 300
consensus_1552#1 ACTGATCAGTTAAGCTCATATGAGCCTGAATCACTCCAATCAGTTGAAAGTCAGCTGGCA 147
************************* **********************************
consensus_1552#0 GCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTA 360
consensus_1552#1 GCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGCACGGTGCTA 207
************************************************************
consensus_1552#0 ATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGT 420
consensus_1552#1 ATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGATCAACATAGT 267
************************************************************
consensus_1552#0 ATTGCAAGCTCCACGAATAATAATAGTAATGTGATGATGAACGAGGAGGAGCTACGGCCA 480
consensus_1552#1 ATTGCAAGCTCCACGAATAATAATAGTAATGGGATGATGAACGAGGAGGAGCTACGGCCA 327
******************************* ****************************
consensus_1552#0 CGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCT 540
consensus_1552#1 CGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACGCTTCTTCCT 387
************************************************************
consensus_1552#0 CCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAG 600
consensus_1552#1 CCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCGCGGCTGCAA 447
***********************************************************
consensus_1552#0 AAGCTGGCCGCCGGCGATGAGCCGCTGCAGATATGTTGCAAGAGGCAGGCTGCTGCTGCT 660
consensus_1552#1 AAGCTGGCCGCCGGCGATGAGCCGCCCCATATATTTTGCAAGAGGCAGGCTGCTGCTGCT 507
************************* ** **** *************************
consensus_1552#0 GCAGTGGTCGGCCATAGCAGCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCT 720
consensus_1552#1 GCAGTGGTCGGCCATAGCANCATAAGAGATGAGCATGTGCCCTGCCCCTATGCTGGCCCT 567
******************* ****************************************
consensus_1552#0 CCTGCTCATCTAATTCAAGGACCATCCAACACCCT------GCAGATGAAGAGGAATACG 774
consensus_1552#1 CCTGCTCATCTAATTCAAGGACCATCCAACACCCTACACATGCAGATNAAGAGGAATACG 627
*********************************** ****** ************
consensus_1552#0 AATGCAGCAGCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCA 834
consensus_1552#1 AATGCAGCATCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCATCA 687
********* **************************************************
consensus_1552#0 ACAGCGCTGCCGCCATCGTCAAAGAAGCCCCGGCTCGAGTCACACTCCTCCTCAATGCTT 894
consensus_1552#1 ACAGCGCTG--------------------------------------------------- 696
*********
consensus_1552#0 CCTTCATTCAAGGTAAGGAAAGAGAAACTAGGGGATAGAATTGCCGCCCTTCAGCAACTG 954
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 GTCTCACCCTTTGGTAAGACTGATACCGCATCGGTACTCATGGAGGCCATCGGTTACATC 1014
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 AAATCTCTTCAGGACCAAGTTGAGACTTTGAGCGGTCCATACCTGAGATCATCCAAGAAC 1074
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 AGCAAGAAATTAGCCTGCAGGGCAGCACAACAACAACGGAAGGGGACGTCAAATGGAGGG 1134
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 GACGCAGCAGCAAAGCTTGACCTCCGAAGTAGAGGACTCTGCCTGGTGCCCCTGTCGTGC 1194
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 ACCTCCTACGTCACCAACGAGAATGGGGTTTGGCCTCCACCCAATTTCAGAGGAAACTGA 1254
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 ACTAATCTATCACAGATTCATACTACTAGCTAGGAGTACTATACAACAATGTCAGCTCAT 1314
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 CTAGCTAGCTAGCTACAGCAGATCCAACACACAAAGTTGTACTACTCATCAAACTGAGCA 1374
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 ACATTACTGGACTCGGCTGGAGGATCTCAGTATCCGATTCCTCTGCTTTTGTCTGGTGTG 1434
consensus_1552#1 ------------------------------------------------------------
consensus_1552#0 TATGTCTCCTCTTTGTTAAGAATTTGGTCTTTGCTCAGGCACACATCATATAC 1487
consensus_1552#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||