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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1163 fasta sequence
[TTTTTGTTTTTTAGAACTAGCGACTATTTTCATAGCATCAAGCAGTACAATATATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAACTGCTTATTTAAGCAGGGGCCA-AGCGAAGGCACCCCTTCACATGATCA-CATATATACTTACTCGTGACAGGAAAAAATGCAGAAGCCCCCA-------A---GTTGCCACTTGGCCCAAATTACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCTGCTGCTGTTCATCATAGCTCGAGGAAGACGAAC-TCC-TCGATCGCCGGGATGTG-GCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGGTTGCCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTACTTGACCCTCCCCTCGAGGACGATGTC-GCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCT-GGATGGACTCCAGCGGCGCCTCCGCGGCGGGGCTCTCGTGGGAGACCCGC-TCCTCGGTGATGCGCAGGCCGCGCTGCTTCGCCGTGTAGTCGGCGTTCACCAGGTTGACGAACGTGCTCGACACGGGCTCCACGATGCCCTTGGTCACCATGGCGCGGAGGAGCCTCGTGTCGAGGTCGTCCGGGCCACGGGCCGTGGTGTACACCACCTTGACGCCCTTGATGCCGCCGCTCTCGCCTGCGACGAGCTGCACCGCCAGCTTGCCCAGCTTCTCTGCCAGTGAAACATACGGGGCAAGCTCTGACATGACCTCAGCTGGGACCATGGGAGCATTCACGGCTGTTGCTGCGAGCTCACCTCTCAGTGCACCGACGACAGCTTCGGCTATCTCGATAGCGACGCCCTCCTGGGCCTCCACTGTACTTGCTCCAAGATGGGGTGTAACAGTAACATTCTCATGGAGGACTAGCTTGCTGTCCTTGG]
[-] EMBL AU058295 [TTTTTGTTTTTTAGAACTAGCGACTATTTTCATAGCATCAAGCAGTACAATATATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAACTGCTTATTTAAGCAGGGGCCA AGCGAAGGCACCCCTTCACATGATCA CATATATACTTACTCGTGACAGGAAAAAATGCAGAAGCCCCCA A GTTGCCACTTGGCCCAAATTACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGNTGCTGCTGCTGTTCATCATAGNTCGAGGAAGACGAAC TCCTTCGATCGCCGGGATGTG GCCGATGTGCTCNAGGGTCTCCTTGTCGGGNTCCTCGTCGACGCCGATGGCCATGATGGNCTGCTTGCCGCGGAAGGTCCGGNCGAAGCTCAT ]
[+] EMBL CB649298 [ tcTTTTTTTTTAGAACTAGCGACTATTTTCATAGCATCAAGCAGTACAATATATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAACTGCTTATTTAAGCAGGGGCCA AGCGAAGGCACCCCTTCACATGATCA CATATATACTTACTCGTGACAGGAAAAAATGCAGAAGCCCCCA A GTTGCCACTTGGCCCAAATTACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCTGCTGCTGTTCATCATAGCTCGAGGAAGACGAAC TCC TCGATCGCCGGGATGTG GCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGGTTGCCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTACTTGACCCTCCCCTCGAGGACGATGTC GCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCT GGATGGACTCCAGCGGCGCCTCCGCGGCGGGGCTCTCGTGGGAGACCCGC TCCTCGGTGATGCGCAGGCCGCGCTGCTTCGCCGTGTAGTCGGCG ]
[+] EMBL CB683637 [ GACTATTTTCATAGCATCCTTCAGAACAATATATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAACTGCTTATTTAAGCAGGGGCCA AGCGAAGGCACCCCTTCACATGATCA CATATATACTTACTCGTGACAGGAAAAAATGCAGAAGCCCCCA A GTTGCCACTTGGCCCAAATTACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCTGCTGCTGTTCATCATAGCTCGAGGAAGACGAAC TCC TCGATCGCCGGGATGTG GCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGGTTGCCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTACTTGACCCTCCCCTCGAGGACGATGTC GCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCT GGATGGACTCCAGC ]
[-] EMBL AU085904 [ ttttTGATACAGCACAAGCATTCATCAATAATAATACGCA TTACACATACGTACATAGACATACACCGTGCTTAACTGCTTATTTAAGCAGGGGCCA AGCGAAGGCACCCCTTCACATGATCA CATATATACTTACTCGTGACAGGAAAAAATGCAGAAGCCCCCA A GTTGCCACTTGGCCCAAATTACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCTGCTGCTGTTCATCATAGCTCGAGGAAGACGAAC TCC TCGATCGCCGGGATGTG GCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTTGCCGCGGAA GTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGGTTGCCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCAC CCGTACTTGACCCTCCCCTCGAGGACGATGTC GCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAACCTCACCTGGGATGGACTCCANCGGGGGCTCCGCGGCGGGGCTCTCGTGGGAANACCGCTTCCTCTGTGATGCGC ]
[-] EMBL BE040563 [ TAATGAA CA GGGCCACAG GAAGGCACCCC TCACATGATTACCATA AAACTACCTTGTG CAGGAAAAAATGCAGAGCCCCCCAGGTTGCCACCTGTTGCCACTTGGCCCAATTTACGGGCTGCTA TTAGCTTAGC TAACCTACTTGAATCCAACGAACTGCTGTGGCTGCTGCTGTTGTTCATCATAGCTCGAGNAAG CGAACTTCC TCGATCGCCGGAATGTGCCCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCAACGCGGATGGCCATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCAACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCGAAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGGTTGCCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTACTTGACCCTCCCCTCGAGGACGATGTC GCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCT GGATGGACTCCAGCGGCGCCTCCGCGGCGGGGCTCTCGTGGGAGACCCGC TCCTCGGTGATGCGCAGGCCGCGCTGCTTCGCCGTGTAGTCGGCGTTCACCAGGTTGACGAACGTGCTCGACACGGGCTCCACGATGCCCTTGGTCACCATGGCGCGGAGGAGCCTCGTGTCGAGGTCGTCCGGGCCACGGGCCGTGGTGTACACCACCTTGACGCCCTTGATGCCGCCGCTCTCGCCTGCGACGAGCTGCACCGCCAGCTTGCCCAGCTTCTCTGCCAGTGAAACATACGGGGCAAGCTCTGACATGACCTCAGCTGGGACCATGGGAGCATTCACGGCTGTTGCTGCGAGCTCACCTCTCAGTGCACCGACGACAGCTTCGGCTATCTCGATAGCGACGCCCTCCTGGGCCTCCACTGTACTTGCTCCAAGATG ]
[+] EMBL CB624079 [ C TCC TCGATCGCCGGGATGTG GCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGGTTGCCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTACTTGACCCTCCCCTCGAGGACGATGTC GCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCT GGATGGACTCCAGCGGCGCCTCCGCGGCGGGGCTCTCGTGGGAGACCCGC TCCTCGGTGATGCGCAGGCCGCGCTGCTTCGCCGTGTAGTCGGCGTTCACCAGGTTGACGAACGTGCTCGACACGGGCTCCACGATGCCCTTGGTCACCATGGCGCGGAGGAGCCTCGTGTCGAGGTCGTCCGGGCCACGGGCCGTGGTGTACACCACCTTGACGCCCTTGATGCCGCCGCTCTCGCCTGCGACGAGCTGCACCGCCAGCTTGCCCAGCTTCTCTGCCAGTGAAACATACGGGGCAAGCTCTGACATGACCTCAGCTGGGACCATGGGAGCATTCACGGCTGTTGCTGCGAGCTCACCTCTCAGTGCACCGACGACAGCTTCGGCTATCTCGATAGCGACGCCCTCCTGGGCCTCCACTGTACTTGCTCCAAGATGGGGTGTAACAGTAACATTCTCATGGAGGACTAGCTTGCTGTCCTTGG]
[-] EMBL AU225388 [ TCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTACTTGACCCTCCCCTCGAGGACGATGTC GCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCT GGATGGACTCCAGCGGCGCCTCCGCGGCGGGGCTCTCGTGGGAGACCCGC TCCTCGGTGATGCGCAGGCCGCGCTGCTTCGCCGTGTAGTCGGCGTTCACCAGGTTGACGAACGTGCTCGACACGGGCTCCACGATGCCCTTGGTCACCATGGCGCGGAGGAGCCTCGTGTCGAGGTCGTCCGGGCCACGGGCCGTGGTGTACACCACCTTGACGCCCTTGATGCCGCCGCTCTCGCCTGCGACGAGCTGCACCGCCAGCTTGCCCAGCTTCTCTGCCAGTGAAACATACGGGGCAAGCagcggc ]
[-] EMBL C72824 [ CGACGACGTTNAGGTGCGGCACGCCGTACTTGACCNTCCCNTCGAGGACGATGTCGGCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCT GGATGGACTCCAGCGGCGCCTCCGCGGCGGGGCTCTCGTGGGAGACCCGC TCCTCGGTGATGCGCAGGCCGCGCTG TTCGCCGTGTAGTCGGCGTTCACCAGGTTGACGAACGTGCTCGACACGGGCTCCACGATGCCCTTGGTCACCATGGCGCGGAGGAGCCTCGTGTCGAGGTCGTCCGGGCCACGGGCCGTGGTGTACACCACCTTGACGCCCTTGATGCCGCCGCTCTCGCCTGCGACGAGCTGCACCGCCAGCTTGCCCAGC ]
consensusID : consensus_15779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 649 fasta sequence
[TTTTTTTTTTTTTTTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAACTGCTTATTTAAGCAGGGGCCAAGCGAAGGCACCCCTTCACATGATCACATATATACTTACTCGTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACTTGGCCCAAATTACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCTGCTGCTGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGGTTGCCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTACTTGACCCTCCCCTCGAGGACGATGTCGCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCTGGATGGACTCCAG]
[-] EMBL BP184368 [TTTTTTTTTTTTTTTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAACTGCTTATTTAAGCAGGGGCCAAGCGAAGGCACCCCTTCACATGATCACATATATACTTACTCGTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACTTGGCCCAAATTACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCTGCTGCTGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGGTTGCCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTACTTGACCCTCCCCTCGAGGACGATGTCGCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCTGGATGGACTCCAG]
[-] EMBL BP184356 [TTTTTTTTTTTTTTTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAACTGCTTATTTAAGCAGGGGCCAAGCGAAGGCACCCCTTCACATGATCACATATATACTTACTCGTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACTTGGCCCAAATTACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCTGCTGCTGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGGTTGCCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTACTTGACCCTCCCCTCGAGGACGATGTCGCCGCCGTCGCTGATGGCGCCGGCGAACTTGGACTGGACGTGTGAGAGCCTCACCTGGATGGACT ]
[-] EMBL AU172950 [ CATAGACATACACCGTGCTTAACTGCTTATTTAAGCAGGGGCCAAGCGAAGGCACCCCTTCACATGATCACATATATACTTACTCGTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACTTGGCCCAAATTACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCTGCTGCTGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTTGTCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGATGTTGCCGACCTTGCCGATCATGCCGGGCTGGTCGATCTGCCGGCACAGGATCAGG ]
consensusID : consensus_15779#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 613 fasta sequence
[TTTTGGGTTAAAAAGGGTTCATATACCGTCATTTCTTCCCATCATCAAATGACCATTTTTTAGAATTAGCGAC-TATTTTCATAGCATCAAG-CAGCACAATA-TATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA-TAGACATACACC-GTGC-TTAACTGCTTATTTAAGC-AGGGGCCAAGCGAAGGC-ACCCC-TTCACATGA-TCACATA-TA-TACTTACTC-GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACC--T-GTG-GCCACT-TGGCCCAAATTACG-TGC-TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC-TGCTGCTGC-TGC-TGCTGC-TGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATC-GCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTT-G-T-C-GGGCTCCTCG-TCGACGCCGATG-GC-CATGATGGCCTGCTTGCCGCGGAAGGTCCGG-CGACGCTCATGAAGCTGA-TGTTGACGTT-CGTCTGGCCGAGG-ATGTTGCCGACC---TTGCCG-ATC-AT-GCC-GGGCT-GGTC-GAT-CTGGCG-GCACAGGATCCAGGTTGCCCTCCAGGCTGACGT]
[-] EMBL BI807492 [TTTTGGGTTAAAAAGGGTTCATATACCGTCATTTCTTCCCATCATCAAATGACCAAGCATTAGAATTAGCGAC TATTTTCATAGCATCAAG CAGCACAATA TATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACC GGGC TTAACTG TTATTTAAGC AGGGGCCAAGCGAAGGC ACCCC TTCACATGA TCACATA TA TACTTACTC GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTG CACC T GTG G CACT TGGCCC AATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC TGCTGCTGC TGC TGCTGC TGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATC GCCGGGATGTGG CGATGTGCTCGAGGGTCTCCTT G T C GGGCTCCTCG TCGACGCCGATG G CATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGA TGTTGACGTT CGTCTGG CGAGG ATGTTGCCGACC TTGGCG ATC AT GCC CGGGT GGTC GAT CTGGCG GC ]
[-] EMBL BI807619 [TTTTTGGTTAAAAAGGGTTCATATACCGTCATTTCTTCCCATCATCAAATGACCAAGCATTAGAATTAGCGAC TATTTTCATAGCATCAAG CAGCACAATA TATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACC GTGCGTTAACTGCTTATTTAAGC AGGGGCCAAGCGAAGGC ACCCC TTCACATGA TCACATA TA TACTTACTC GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACC T GTG GCCACT TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC TGCTGCTGC TGC TGCTGC TGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATC GCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTT G T C GGGCTCCTCG TCGACGCCGATG GC CATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGA TGTTGACGTT CGTCTGGCCGAGG ATGTTGCCGACC TTGCCG ATC AT GCC GGGCT GGTC GA ]
[-] EMBL BM420617 [ TTTTTTAGAATTAGCGAC TATTTTCATAGCATCAAGCCAGCACAAAA TATGTCTGATACAGGACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACCGGGGC TTAACTG TTATTTAAGC AGGGGGCAAGCGAAGG ACCCC TTCACATGA TCACATA TA TACTTACTCGGTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGGCACC TGGTG GGCACTGTGGGCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAACGTGGTGCTGCATGC TGCTGC TGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATC GCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTTGG TAC GGGCTCCTCG TCGACGCCGATG GC CATGATGGCCTG TTGCCG GGAAGGTCCGG CGACGCTCATGAAGCTGA TGTTGACGTT CGTCTGGCCGAGG ATGTTGCCGACC TTG CG ATC AT GCC ]
[-] EMBL BI811254 [ ttttTTTTTTAGAATTAGCGAC TATTTTCATAGCATCAAG CAGCACAATA TATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACC GTGC TTAACTGCTTATTTAAGC AGGGGCCAAGCGAAGGC ACCCC TTCACATGA TCACATA TA TACTTACTC GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACC T GTG GCCACT TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC TGCTGCTGC TGC TGCTGC TGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATC GCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTT G T C GGGCTCCTCG TCGACGCCGATG GC CATGATGG CTG TTGCCG GGAAGGTCCGG CGA GCTCATGAAGCTGA TGTTGACGTT CGTCTGGCCGAGG ATGTTGCCGA C TTGCga ]
[-] EMBL BI808395 [ ttttTTTTTTAGAATTAGCGACGGATGGTCATAGCATCAAG CAGCACAATA TATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACC GTGC TTAACTGCTTATTTAAGC AGGGGCCAAGCGAAGGC ACCCC TTCACATGAGGGACATA TA TACTTACTC GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACC T GTG GCCACT TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC TG TGCTGC TGC TGCTGC TGTTCATCATAG TCGAGGAAGACGAA TCCTCGATC G CGGGATGTGGCCGATGTGCTCGAGGGTCTCCTTGG T C GGGCTCCTCG TCGAAGCCGATG GG CATGAT ]
[-] EMBL BM038399 [ TTTTTAGAATTAGCGAC TATTTTCATAGCATCAAG CAGCACAATA TATGTCTGATACAGGACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACACTAGACATACACC GTGC TTAACTGGTTATTTAAGC AGGGG CAAGCGAAGG ACCCC TTCACATGA TCACATA TA TACTTACTC GTGACAGGAAAAAATGNNGAAGCCCCCAAGTTGGCACC T GTG GGCACT TGGGCCAAATTACGTTGCGTG TACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC TGNTGCTGC TGG TG TGCTTGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATCTGCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTT G T CTGGGCTCCTCG TCGACGCCGATG GG CATGATGGGCTG TTGGCGCGGAAGGTCCGG CGA GCTCATGAAGCTGATTGTTGACGTT CGTCTGGGCGAGGAATGTTGCCGACCCTATGGCCGAATCAATGGCCGGGGGTGGGTC GAc aca ]
[-] EMBL BI810234 [ TTTTTAGAATTAGCGAC TATTTTCATAGCATCAAG CAGCACAATA TATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACC G GC TTAACTGCTTATTTAAGC AGGGGCCAAGCGAAGGC ACCCC TTCACATGA TCACATA TA TACTTACTC GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACC T GTG G CACT TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAA CTACTTGAATCCGACGAAC TGCTGCTGC TGC TGCTGC TGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATC GCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTT G T C GGGCTCCTCG TCGACGCCGATG GC CATGATGGCCTGCTTGCCGCGGAAGGTCCGG CGA GCTCATGAAGCTGACTGTTGACGTT CGTCTGGCCGAGG ATG TG CGA C TTGCCG ATC AT G C GGGCT GGTC G ]
[-] EMBL BQ907517 [ TTTTTAGAATTAGCGAC TATTTTCATAGCATCAAG CAGCACAATA TATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACCGGTGC TTAACTGATTATTTAAGC AGGGGCCAAGCGAAGGC ACCCC TTCACATGA TCACATA TA TACTTACTC GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACC T GTG GCCACT TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC TGCTGCTGC TGC TGCTGC TGTTCATCATAGCTCGAGGANGACGAACTCCTCGATC GCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTT G T C GGGCTCCTCG TCGACGCCGATG GC CATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGA TGTTGACGTTACGTCTGGCCGAGG ATGTTGCCGACC TTGCCG ATC AT GCC GGGCT GGTC GAT CTGNCG GCACAGGATCCAGGTTGCCCTCCAGGCTGACGT]
[-] EMBL BQ907195 [ tttTTTTTTTAGCATCAAG CAGCACAATATTATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACCGGTGC TTAACTGCTTATTTAAGCGAGGGGCCAAGCGAAGGCNACCCCTTTCACATGA TCACATATTATTACTTACTCGGTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACCG TGGTG GCCACT TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAAT ]
[-] EMBL BI796932 [ tttTTTTTTTAGCATCAAG CAGCACAATA TATGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACCGGTGC TTAACTGCTTATTTAAGC AGGGGCCAAGCGAAGGC ACCCC TTCACATGA TCACATA TA TACTTACTC GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACCG TGGTG GCCAC TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAAT ]
[-] EMBL BI810712 [ ttttttt ttTGTCTGATACAGCACAAGCATTCATCAATAATAATACGCAGTTACACATACGTACA TAGACATACACC GTGC TTAACTG TTATTTAAGC AGGGGCCAAGCGAAGGC ACCCC TTCACATGA TCACATA TA TACTTACTC GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACC T GTGTGCCACT TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC TG TGCTGC TGC TGCTGC TGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATC GCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTT G T C GGGCTCCTCG TCGACGCCGATG GC CATGATGG CTGCTTG CGCGGAAGGTCCGG CGAAGCTCATGAAGCTGA TGTTGACGTTCCGTCT ]
[-] EMBL BU672938 [ acgcg gctACATGA TCACATA TA TACTTACTC GTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACC T GTG GCCACT TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC TGCTGCTGC TGC TGCTGC TGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATC GCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTT G T C GGGCTCCTCG TCGACGCCGATG GC CATGATGGCCTGCTTGCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGA TGTTGACGTT CGTCTGGCCGAGG ATGTTGCCGACC TT CCG ATC AT GCC GGCT GTCGGATGTTGGAGTGCGCAGctattcc ]
[-] EMBL BI809454 [ GCCCCCAAGTGGCCACCGGG GTG GCCATT TGGCCCAAATTACG TGC TGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAAC TGGTGCTGC TGCATGCTGC TGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATC GCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTT GATAC GGGCTCCTCGATCGA GCCGATGTGCACATGATGGC ]
consensusID : consensus_15779#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence
[GGCTGGTGGTACATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTTGGTGGGGCTCCTCGTCGACGCCGATGGCCATGATGGCTGTTGCCGGGAAGTGTCCGGGCGACGCTCAATGAAGTGATGTTGACGTTCGTCTGGCGAAGATGTTGCCGACTTGCCGAACATGCCGGGGGTGGTCGATCTGGCGGGCCAGATCG]
[-] EMBL BI795673 [GGCTGGTGGTACATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATGTGCTCGAGGGTCTCCTTGGTGGGGCTCCTCGTCGACGCCGATGGCCATGATGGCTGTTGCCGGGAAGTGTCCGGGCGACGCTCAATGAAGTGATGTTGACGTTCGTCTGGCGAAGATGTTGCCGACTTGCCGAACATGCCGGGGGTGGTCGATCTGGCGGGCCAGATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15779#2 TTTTGGGTTAAAAAGGGTTCATATACCGTCATTTCTTCCCATCATCAAATGACCATTTTT 60
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 -------------------------------------------------TTTTTGTTTTT 11
consensus_15779#1 ------------------------------------------------------------
consensus_15779#2 TAGAATTAGCGACTATTTTCATAGCATCAAGCAGCACAATATATGTCTGATACAGCACAA 120
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 TAGAACTAGCGACTATTTTCATAGCATCAAGCAGTACAATATATGTCTGATACAGCACAA 71
consensus_15779#1 ---------------------------------TTTTTTTTTTTTTTTGATACAGCACAA 27
consensus_15779#2 GCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAAC 180
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 GCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAAC 131
consensus_15779#1 GCATTCATCAATAATAATACGCAGTTACACATACGTACATAGACATACACCGTGCTTAAC 87
consensus_15779#2 TGCTTATTTAAGCAGGGGCCAAGCGAAGGCACCCCTTCACATGATCACATATATACTTAC 240
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 TGCTTATTTAAGCAGGGGCCAAGCGAAGGCACCCCTTCACATGATCACATATATACTTAC 191
consensus_15779#1 TGCTTATTTAAGCAGGGGCCAAGCGAAGGCACCCCTTCACATGATCACATATATACTTAC 147
consensus_15779#2 TCGTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCACCTGTGGCCACTTGGCCCAAAT 300
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 TCGTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCA----------CTTGGCCCAAAT 241
consensus_15779#1 TCGTGACAGGAAAAAATGCAGAAGCCCCCAAGTTGCCA----------CTTGGCCCAAAT 197
consensus_15779#2 TACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAACTGCTGCTGCTGCT 360
consensus_15779#3 --------------------------------------------------------GGCT 4
consensus_15779#0 TACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCT 301
consensus_15779#1 TACGTGCTGCTACTTAGCTTAGCTTAACCTACTTGAATCCGACGAGCTGCTGCTGCTGCT 257
***
consensus_15779#2 GCTGCTGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATG 420
consensus_15779#3 GGTG--GTACATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATG 62
consensus_15779#0 GCTGCTGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATG 361
consensus_15779#1 GCTGCTGTTCATCATAGCTCGAGGAAGACGAACTCCTCGATCGCCGGGATGTGGCCGATG 317
* ** ** ***************************************************
consensus_15779#2 TGCTCGAGGGTCTCCTTG-TCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTT 479
consensus_15779#3 TGCTCGAGGGTCTCCTTGGTGGGGCTCCTCGTCGACGCCGATGGCCATGATGGCTG--TT 120
consensus_15779#0 TGCTCGAGGGTCTCCTTG-TCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTT 420
consensus_15779#1 TGCTCGAGGGTCTCCTTG-TCGGGCTCCTCGTCGACGCCGATGGCCATGATGGCCTGCTT 376
****************** * ********************************* **
consensus_15779#2 GCCGCGGAAGGTCCGG-CGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGAT 538
consensus_15779#3 GCCGGGAAGTGTCCGGGCGACGCTCAATGAAGTGATGTTGACGTTCGTCTGGC-GAAGAT 179
consensus_15779#0 GCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGAT 480
consensus_15779#1 GCCGCGGAAGGTCCGGCCGACGCTCATGAAGCTGATGTTGACGTTCGTCTGGCCGAGGAT 436
**** * * ****** ********* * ********************* ** ***
consensus_15779#2 GTTGCCGACCTTGCCGATCATGCCGGGC-TGGTCGATCTGGCGGCACAGGATCCAGGTTG 597
consensus_15779#3 GTTGCCGAC-TTGCCGAACATGCCGGGGGTGGTCGATCTGGCGGGCCAG-ATCG------ 231
consensus_15779#0 GTTGCCGACCTTGCCGATCATGCCGGGC-TGGTCGATCTGCCGGCACAGGATC-AGGTTG 538
consensus_15779#1 GTTGCCGACCTTGCCGATCATGCCGGGC-TGGTCGATCTGCCGGCACAGGATC-AGGTTG 494
********* ******* ********* *********** *** *** ***
consensus_15779#2 CCCTCCAGGCTGACGT-------------------------------------------- 613
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 CCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTAC 598
consensus_15779#1 CCCTCCAGGCTGACGTCCACCTCGTAGGGCCCGACGACGGTGAGGTGCGGCACGCCGTAC 554
consensus_15779#2 ------------------------------------------------------------
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 TTGACCCTCCCCTCGAGGACGATGTCGCCGCCGTCGCTGATGGCGCCGGCGAACTTGGAC 658
consensus_15779#1 TTGACCCTCCCCTCGAGGACGATGTCGCCGCCGTCGCTGATGGCGCCGGCGAACTTGGAC 614
consensus_15779#2 ------------------------------------------------------------
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 TGGACGTGTGAGAGCCTCACCTGGATGGACTCCAGCGGCGCCTCCGCGGCGGGGCTCTCG 718
consensus_15779#1 TGGACGTGTGAGAGCCTCACCTGGATGGACTCCAG------------------------- 649
consensus_15779#2 ------------------------------------------------------------
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 TGGGAGACCCGCTCCTCGGTGATGCGCAGGCCGCGCTGCTTCGCCGTGTAGTCGGCGTTC 778
consensus_15779#1 ------------------------------------------------------------
consensus_15779#2 ------------------------------------------------------------
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 ACCAGGTTGACGAACGTGCTCGACACGGGCTCCACGATGCCCTTGGTCACCATGGCGCGG 838
consensus_15779#1 ------------------------------------------------------------
consensus_15779#2 ------------------------------------------------------------
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 AGGAGCCTCGTGTCGAGGTCGTCCGGGCCACGGGCCGTGGTGTACACCACCTTGACGCCC 898
consensus_15779#1 ------------------------------------------------------------
consensus_15779#2 ------------------------------------------------------------
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 TTGATGCCGCCGCTCTCGCCTGCGACGAGCTGCACCGCCAGCTTGCCCAGCTTCTCTGCC 958
consensus_15779#1 ------------------------------------------------------------
consensus_15779#2 ------------------------------------------------------------
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 AGTGAAACATACGGGGCAAGCTCTGACATGACCTCAGCTGGGACCATGGGAGCATTCACG 1018
consensus_15779#1 ------------------------------------------------------------
consensus_15779#2 ------------------------------------------------------------
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 GCTGTTGCTGCGAGCTCACCTCTCAGTGCACCGACGACAGCTTCGGCTATCTCGATAGCG 1078
consensus_15779#1 ------------------------------------------------------------
consensus_15779#2 ------------------------------------------------------------
consensus_15779#3 ------------------------------------------------------------
consensus_15779#0 ACGCCCTCCTGGGCCTCCACTGTACTTGCTCCAAGATGGGGTGTAACAGTAACATTCTCA 1138
consensus_15779#1 ------------------------------------------------------------
consensus_15779#2 -------------------------
consensus_15779#3 -------------------------
consensus_15779#0 TGGAGGACTAGCTTGCTGTCCTTGG 1163
consensus_15779#1 -------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||