cluster # 15840

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Oryza sativa
cluster # 15840 cluster # 15840 Sequences # 25 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15840#0 length = 1205 sequences # 21

consensus_15840#1 length = 526 sequences # 3
consensus_15840#2 length = 441 sequences # 1

consensusID : consensus_15840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 21
consensus length = 1205
fasta sequence

                              [TTCTCCCCTCCTCAACCAAGCAG-AAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC-CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA-CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA-TC-CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT-GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAAAAAAAAAAAAAAAACACTGTCA]

[+] EMBL CF308347             [TTCTCCCCTCCTCAACCAAGCAG AAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCCTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK068681             [     CCCTCCTCAACCAAGCAG AAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCCCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAG                                      ]
[+] EMBL CF279168             [     CCCTCCTCAACC AGCAA AATTGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCATGCGCTCTAGGAGGGTGGTGGCCATGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS12207A            [                angnCAGNAAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTNTCTTTNTCCGTNTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCNTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCNAGGGCAATGGCGGGCTGCCAAANATCGACCTCAAGTC CCCGCATGGNAGTAAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAANACCTCCTATTTNTCAGACCAGATGCGGTGTTCAACGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS11938A            [               gangnCAG AAATGGCGGCTTCTTGCNCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTTTNTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCNTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCNAGGGCAATGGCGGGCTGCCAAANATCGACCTCAAGTC CCCGCATGGAAGTAAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTNAGACCANATGCGGTGTTCAACGGCCAGAAACCCATNANTGGTGGAATCCCAAATTGtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF331387             [                             GCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACTCTCTCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAATATCTACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTTTCAT CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS3847A             [                                     TTGCGCGCTCACCCTCCCCTCCGCCATNTCCGTCTCTGTNTCCGTCTCCTCCAATTNACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCNCCCGGCGTGGCGGTCTCCNAGGGCAATNGCGGGCTGCCAAAAATCGACCTCAAGTC CCCGCATGGAAGTa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSS3841A             [                                     TTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAAATCGACCTCAAGTC CCCGCATGGNAGTAAGGCTGAAATTTATCTATTTGGAGCCTGCGTAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA758865             [                                     TTGCGCGCTCACCCTCCCCTCCGCCATCTCCTTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGCAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF196594             [                                         GCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCNGTTCAATGTGGGATTTTNNNTTNNNNNCTCTGTATAAGGTTGCATTGCACTCTACNNNNCTGTCAA CAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF196556             [                                         GCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGNTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAANTNNNNACTCCNNNNCTATTTCAGTGCTTCAATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF281037             [                                                 CCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGCGGGGCAGAAGGTGTACGCGCCCGGCGTGTTTGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTCTCTTTCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU088668             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 tcCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAACCAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAAA                     ]
[+] EMBL CF196937             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTANNNNNNTTATGTTGCNNNNNNGAACTTCTNNNNNNCTTTACATCNNNNAATGCNNNTGTCNNNGCCCnnnn                                                                                                                   ]
[-] EMBL BI305490             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGACTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATCAGTCATATTTTTTAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGT                                     ]
[-] EMBL CF281036             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TCNCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCAAAAAAA                ]
[-] EMBL CF279167             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGATTC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAACGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAA                      ]
[+] EMBL C74898               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTNGATATGAATTA                                                                                                                                                                                                                        ]
[-] EMBL CF308348             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAAAAAAAAAAAAAAAACACTGTCA]
[+] EMBL AU173015             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAA                       ]
[+] EMBL AU096124             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   catgGGATTGGNTGAC AAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGNTGTGGATCCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGNAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAAA                     ]




>consensus_15840#0
TTCTCCCCTCCTCAACCAAGCAGAAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGC
CATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAG
GGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGA
GGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTCCCCGCATGGGAGTGAGGCTGAAAT
TTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATT
TGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTG
CTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTG
GTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGA
TGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATT
GCACTCTACAAGCCTGTCAACAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTC
ATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGG
TCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGATCCCAAAAACCCTTTGGAGGGGAA
AGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACC
GAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTG
GTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGT
CTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGC
AGAGCAGAAAATTGAACTGATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTAC
AACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCA
TAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGT
AATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAAAAAAAAAAAAAAAACAC
TGTCA

consensusID : consensus_15840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 526
fasta sequence

                              [CGATCCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGATTTATGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTGATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCATCCTCTCCTTTTTATTAATGAGCGGCCTGCTAAGT]

[+] EMBL CF323517             [CGATCCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGATTTATGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTGATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCATCCTCTCCTTTTTATTAATGAGCGGCCTGCTAAGT]
[-] EMBL CF331386             [   TCCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGA GCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTGATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATTTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCATCCTCTCCTTTTTATTAAaaaaa            ]
[+] EMBL CB679848             [                                                                                                                                                                                                                                                                           CAGAGCAGAAAATTGAACTGATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAG                                                   ]




>consensus_15840#1
CGATCCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATT
TGTCGATTGCATTTACCTTGGTGCACCGATTTATGCTCACCCTGGACAATGGATTGGGTG
ACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGC
AGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTAC
AACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTGATATGAATTATGA
AGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTT
TTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCAT
AAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTC
CCATTATTTCATCCTCTCCTTTTTATTAATGAGCGGCCTGCTAAGT

consensusID : consensus_15840#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [TCACCTGGGCACAATGGGATTGGGTGACAAAAATTGTGGATATCAAAATGCGAATTGTTCAAGATCCCAAGTGGCTGTGGGAATCACTCAACTTGCAAGATGGAGGCATTGTTTCACACAAGATTTTGTCTGTGGTTGAAAAATGGCAAAGATTGGAAACAATTACAAACTGGGGCCAGAACCAATCTTGGGTGCCAAGACCAAGAATAATTGAACTGGTATATGAAATTATGAAGCTAAACTGGGCCACAAACACATAGAGTCACAAACAAATTATGTCTGCACAAAAATGGAACTTCTGCTTTTTGCTTGTACAATGCATGAAATCGCACAAATGGTCATAGCCCCTAATGTATCATTTATAGTGCCATAAGTCATATTTTGAAATTTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCAA]

[+] EMBL BI813393             [TCACCTGGGCACAATGGGATTGGGTGACAAAAATTGTGGATATCAAAATGCGAATTGTTCAAGATCCCAAGTGGCTGTGGGAATCACTCAACTTGCAAGATGGAGGCATTGTTTCACACAAGATTTTGTCTGTGGTTGAAAAATGGCAAAGATTGGAAACAATTACAAACTGGGGCCAGAACCAATCTTGGGTGCCAAGACCAAGAATAATTGAACTGGTATATGAAATTATGAAGCTAAACTGGGCCACAAACACATAGAGTCACAAACAAATTATGTCTGCACAAAAATGGAACTTCTGCTTTTTGCTTGTACAATGCATGAAATCGCACAAATGGTCATAGCCCCTAATGTATCATTTATAGTGCCATAAGTCATATTTTGAAATTTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCAA]




>consensus_15840#2
TCACCTGGGCACAATGGGATTGGGTGACAAAAATTGTGGATATCAAAATGCGAATTGTTC
AAGATCCCAAGTGGCTGTGGGAATCACTCAACTTGCAAGATGGAGGCATTGTTTCACACA
AGATTTTGTCTGTGGTTGAAAAATGGCAAAGATTGGAAACAATTACAAACTGGGGCCAGA
ACCAATCTTGGGTGCCAAGACCAAGAATAATTGAACTGGTATATGAAATTATGAAGCTAA
ACTGGGCCACAAACACATAGAGTCACAAACAAATTATGTCTGCACAAAAATGGAACTTCT
GCTTTTTGCTTGTACAATGCATGAAATCGCACAAATGGTCATAGCCCCTAATGTATCATT
TATAGTGCCATAAGTCATATTTTGAAATTTTTTATGTAATAAATAAGTAAATAAATAAAT
TCAGTTCTCCCATTATTTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15840#0      TTCTCCCCTCCTCAACCAAGCAGAAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGC 60
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      CATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAG 120
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      GGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGA 180
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      GGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTCCCCGCATGGGAGTGAGGCTGAAAT 240
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      TTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATT 300
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      TGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTG 360
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      CTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTG 420
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      GTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGA 480
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      TGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATT 540
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      GCACTCTACAAGCCTGTCAACAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTC 600
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      ATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGG 660
consensus_15840#1      ------------------------------------------------------------
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      TCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGATCCCAAAAACCCTTTGGAGGGGAA 720
consensus_15840#1      ---------------------------------CGATCCCAAAAACCCTTTGGAGGGGAA 27
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      AGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACC 780
consensus_15840#1      AGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACC 87
consensus_15840#2      ------------------------------------------------------------
                                                                                   

consensus_15840#0      GAGTGA-GCTCACCCTGG-ACAATGG-ATTGGGTGACAAAA-TTGTG-ATATCAAA-TGC 834
consensus_15840#1      GATTTATGCTCACCCTGG-ACAATGG-ATTGGGTGACAAAA-TTGTG-ATATCAAA-TGC 142
consensus_15840#2      ---------TCACCTGGGCACAATGGGATTGGGTGACAAAAATTGTGGATATCAAAATGC 51
                                *****  ** ******* ************** ***** ******** ***

consensus_15840#0      GAATTGGTCA-GATGC--AGTG-CTGTGGAATCCTC---ACTTGCA-GATGGAGGC-TTG 885
consensus_15840#1      GAATTGGTCA-GATGC--AGTG-CTGTGGAATCCTC---ACTTGCA-GATGGAGGC-TTG 193
consensus_15840#2      GAATTGTTCAAGATCCCAAGTGGCTGTGGGAATCACTCAACTTGCAAGATGGAGGCATTG 111
                       ****** *** *** *  **** ****** *  * *   ******* ********* ***

consensus_15840#0      TTACA---AAGATTTTGTCTGTG-TTGAAAAT--GCAAAGATTGAAAC--ATTACAA-CT 936
consensus_15840#1      TTACA---AAGATTTTGTCTGTG-TTGAAAAT--GCAAAGATTGAAAC--ATTACAA-CT 244
consensus_15840#2      TTTCACACAAGATTTTGTCTGTGGTTGAAAAATGGCAAAGATTGGAAACAATTACAAACT 171
                       ** **   *************** *******   ********** **   ******* **

consensus_15840#0      GGGGCC-GAACCAATCTTGGGTGGCAGAGC--AGAA-AATTGAACTGATATG---AATTA 989
consensus_15840#1      GGGGCC-GAACCAATCTTGGGTGGCAGAGC--AGAA-AATTGAACTGATATG---AATTA 297
consensus_15840#2      GGGGCCAGAACCAATCTTGGGTGCCAAGACCAAGAATAATTGAACTGGTATATGAAATTA 231
                       ****** **************** **   *  **** ********** ***    *****

consensus_15840#0      TGAAGCTAAACTGGGCAA--AACA-ATAGAGT-ACAAC--AATTATGTT---GCAAAAAT 1040
consensus_15840#1      TGAAGCTAAACTGGGCAA--AACA-ATAGAGT-ACAAC--AATTATGTT---GCAAAAAT 348
consensus_15840#2      TGAAGCTAAACTGGGCCACAAACACATAGAGTCACAAACAAATTATGTCTGCACAAAAAT 291
                       **************** *  **** ******* ****   ********     *******

consensus_15840#0      G-AACTTCT-CTTTTTCTTTACAT----CATGAAAT---GCAAATG-TCATAGCCCCTAA 1090
consensus_15840#1      G-AACTTCT-CTTTTTCTTTACAT----CATGAAAT---GCAAATG-TCATAGCCCCTAA 398
consensus_15840#2      GGAACTTCTGCTTTTTGCTTGTACAATGCATGAAATCGCACAAATGGTCATAGCCCCTAA 351
                       * ******* ******  **  *     ********    ****** *************

consensus_15840#0      TGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAG 1150
consensus_15840#1      TGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAG 458
consensus_15840#2      TGTATCATTTA--TAGTGCCATAAGTCATATTTT-GAAATT-TTTTATGTAATAAATAAG 407
                       ******** **    *** *************** ****** ******************

consensus_15840#0      TAAATAAATAAATTCAGTTCTCCCATTAAAAAAAAA----------AAAAAAAAAAACAC 1200
consensus_15840#1      TAAATAAATAAATTCAGTTCTCCCATTATTTCATCCTCTCCTTTTTATTAATGAGCGGCC 518
consensus_15840#2      TAAATAAATAAATTCAGTTCTCCCATTATTTCAA-------------------------- 441
                       ****************************    *                           

consensus_15840#0      TGTCA--- 1205
consensus_15840#1      TGCTAAGT 526
consensus_15840#2      --------