cluster # 1941

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Oryza sativa
cluster # 1941 cluster # 1941 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1941#0 length = 611 sequences # 1

consensus_1941#1 length = 607 sequences # 1

consensusID : consensus_1941#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [ACTGTCGTTCTAAATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAGTGAATGGCAAGAAGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATTCTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTAGTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATTCAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCATCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTCAATCCATCGCATTGTATTCCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCACAATTTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTAAACATGAATTANAGATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTCCTTCACAACAACAACNACNACNACNACNACCATGGTCAATTCAATTGAATCAACATATTGAANATCGTGTTGTTAATGATAAACGTAG]

[+] EMBL CA756089             [ACTGTCGTTCTAAATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAGTGAATGGCAAGAAGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATTCTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTAGTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATTCAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCATCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTCAATCCATCGCATTGTATTCCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCACAATTTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTAAACATGAATTANAGATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTCCTTCACAACAACAACNACNACNACNACNACCATGGTCAATTCAATTGAATCAACATATTGAANATCGTGTTGTTAATGATAAACGTAG]




>consensus_1941#0
ACTGTCGTTCTAAATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAGT
GAATGGCAAGAAGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATT
CTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTA
GTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATT
CAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCA
TCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTCAATCCATCGCATTGTATT
CCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCACAAT
TTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTAAACATGAATTANAG
ATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTCCTTCACAACAACAACNA
CNACNACNACNACCATGGTCAATTCAATTGAATCAACATATTGAANATCGTGTTGTTAAT
GATAAACGTAG

consensusID : consensus_1941#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [AATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAATGAATGGCAAGACGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATTCTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTAGTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATTCAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCATCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTTAATCCATCGCATTGTATTCCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCATAATTTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTANACATGAATTANAGATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTTCTTCACAACAACAGCAACCATGGTCAATTNCATTGAATCAACATATTGAANATCGTGTTGTTAATGATAAACGTAGAAGAACAGTCTTTTTCAGTG]

[+] EMBL CA756050             [AATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAATGAATGGCAAGACGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATTCTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTAGTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATTCAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCATCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTTAATCCATCGCATTGTATTCCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCATAATTTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTANACATGAATTANAGATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTTCTTCACAACAACAGCAACCATGGTCAATTNCATTGAATCAACATATTGAANATCGTGTTGTTAATGATAAACGTAGAAGAACAGTCTTTTTCAGTG]




>consensus_1941#1
AATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAATGAATGGCAAGAC
GAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATTCTCTATCCGATT
TTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTAGTAACACGTCGA
AATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATTCAATCATTAGTT
CATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCATCGACATGTGCA
TGTCCAGCATCATTTGTTCATTCGAAAGTTAATCCATCGCATTGTATTCCAAGTCAAACA
CGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCATAATTTGATCGATGCT
CAACATTGTCATCGAACATCAAGTCATTGGATTANACATGAATTANAGATCGAATCAATT
CAATCGATTGAACAGTCCGATGAACAAATTTCTTCACAACAACAGCAACCATGGTCAATT
NCATTGAATCAACATATTGAANATCGTGTTGTTAATGATAAACGTAGAAGAACAGTCTTT
TTCAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1941#0      ACTGTCGTTCTAAATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAGT 60
consensus_1941#1      ------------AATAAATCTTCGTCATCATCGTCTAACGAGAAAAAAGTCTACGATAAT 48
                                  ********************************************** *

consensus_1941#0      GAATGGCAAGAAGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATT 120
consensus_1941#1      GAATGGCAAGACGAAAGAAATTTACAGAAAACTCGTCGTTTTTTACATTCAACATCGATT 108
                      *********** ************************************************

consensus_1941#0      CTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTA 180
consensus_1941#1      CTCTATCCGATTTTATTAACTTTTCTTGTTCTTGTTGGTACTGTTGTTCTTGTTCTATTA 168
                      ************************************************************

consensus_1941#0      GTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATT 240
consensus_1941#1      GTAACACGTCGAAATTCATGTCGACATATTCATGAAGAAAAGTTAGCTGGCCATTCGATT 228
                      ************************************************************

consensus_1941#0      CAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCA 300
consensus_1941#1      CAATCATTAGTTCATGATCATACACCGGCATGGATATCTTGCAAGAAAACGAATGTTTCA 288
                      ************************************************************

consensus_1941#0      TCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTCAATCCATCGCATTGTATT 360
consensus_1941#1      TCGACATGTGCATGTCCAGCATCATTTGTTCATTCGAAAGTTAATCCATCGCATTGTATT 348
                      ***************************************** ******************

consensus_1941#0      CCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCACAAT 420
consensus_1941#1      CCAAGTCAAACACGTTGCCTTCATTCATGCAAACACAATGAACATTGTGCATGCCATAAT 408
                      ******************************************************** ***

consensus_1941#0      TTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTAAACATGAATTANAG 480
consensus_1941#1      TTGATCGATGCTCAACATTGTCATCGAACATCAAGTCATTGGATTANACATGAATTANAG 468
                      ********************************************** *************

consensus_1941#0      ATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTCCTTCACAACAACAACNA 540
consensus_1941#1      ATCGAATCAATTCAATCGATTGAACAGTCCGATGAACAAATTTCTTCACAACAACAGCAA 528
                      ****************************************** ************* * *

consensus_1941#0      CNACNACNACNACCATGGTCAATTCAATTGAATCAACATATTGAANATCGTGTTGTTAAT 600
consensus_1941#1      C------------CATGGTCAATTNCATTGAATCAACATATTGAANATCGTGTTGTTAAT 576
                      *            ***********  **********************************

consensus_1941#0      GATAAACGTAG-------------------- 611
consensus_1941#1      GATAAACGTAGAAGAACAGTCTTTTTCAGTG 607
                      ***********