cluster # 1973

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Oryza sativa
cluster # 1973 cluster # 1973 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1973#0 length = 404 sequences # 1

consensus_1973#1 length = 289 sequences # 1

consensusID : consensus_1973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [GAATAGACTGAGGAATAGGGGATATGATATAGGTAACTGAGGANACCTGTGTGTTGAAAGCGTGATGCAAGCCGATCCTGGGCTGTGACGGAATGTTGATGCCGACTGATGCACAGGAATGTGCCTGAAGGTGTNTTGGGGCCGGAATGGGGAATTGGCTGATGTGCTGTGTGCTGACTGTCTGCGGAGGGTGATNAATGGACCAGATGCGAGAAGCTGCCGACTGAAACTCAGAATTGGGGGGGAGAAGTGCTTGATGNTGTGATGATGATGGTGAATGCGCCCCGCCTGATAGCGGTGAATCGCCCCCCCTATAGTTATAGTACCCCAATTCTATCTTGAACNTCCTGATTGTGTGTCAANCCAAAAGACCACGTGTGTTGTTTGATCTTGGAAAAAAAAAA]

[+] EMBL BM421443             [GAATAGACTGAGGAATAGGGGATATGATATAGGTAACTGAGGANACCTGTGTGTTGAAAGCGTGATGCAAGCCGATCCTGGGCTGTGACGGAATGTTGATGCCGACTGATGCACAGGAATGTGCCTGAAGGTGTNTTGGGGCCGGAATGGGGAATTGGCTGATGTGCTGTGTGCTGACTGTCTGCGGAGGGTGATNAATGGACCAGATGCGAGAAGCTGCCGACTGAAACTCAGAATTGGGGGGGAGAAGTGCTTGATGNTGTGATGATGATGGTGAATGCGCCCCGCCTGATAGCGGTGAATCGCCCCCCCTATAGTTATAGTACCCCAATTCTATCTTGAACNTCCTGATTGTGTGTCAANCCAAAAGACCACGTGTGTTGTTTGATCTTGGAAAAAAAAAA]




>consensus_1973#0
GAATAGACTGAGGAATAGGGGATATGATATAGGTAACTGAGGANACCTGTGTGTTGAAAG
CGTGATGCAAGCCGATCCTGGGCTGTGACGGAATGTTGATGCCGACTGATGCACAGGAAT
GTGCCTGAAGGTGTNTTGGGGCCGGAATGGGGAATTGGCTGATGTGCTGTGTGCTGACTG
TCTGCGGAGGGTGATNAATGGACCAGATGCGAGAAGCTGCCGACTGAAACTCAGAATTGG
GGGGGAGAAGTGCTTGATGNTGTGATGATGATGGTGAATGCGCCCCGCCTGATAGCGGTG
AATCGCCCCCCCTATAGTTATAGTACCCCAATTCTATCTTGAACNTCCTGATTGTGTGTC
AANCCAAAAGACCACGTGTGTTGTTTGATCTTGGAAAAAAAAAA

consensusID : consensus_1973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [GTATCAGCCGACCTGGGCTTACGAATTTGATGGCCACTATCAAGGAATTCCTGAAGTTGTTGGCCGGAATGGGAATTGCTGATTGCTGTTGCTACTGTGCTGCGAGGGTATGATATCGACTAGATGCGAGAAGCTGCGACTGAAACTAGAATTGGGGGGAGAAGTGCTTGATGGTGTGATGATGATGGTGAATGCGCCCCGCCTGATGAGCGGTGAATGCGCCCCACCCTGATGAGTGTGATGAGTGACCCAAATGTGCTGATGCTTGGAACTTGCCTGATGTGTGTTG]

[+] EMBL BI808724             [GTATCAGCCGACCTGGGCTTACGAATTTGATGGCCACTATCAAGGAATTCCTGAAGTTGTTGGCCGGAATGGGAATTGCTGATTGCTGTTGCTACTGTGCTGCGAGGGTATGATATCGACTAGATGCGAGAAGCTGCGACTGAAACTAGAATTGGGGGGAGAAGTGCTTGATGGTGTGATGATGATGGTGAATGCGCCCCGCCTGATGAGCGGTGAATGCGCCCCACCCTGATGAGTGTGATGAGTGACCCAAATGTGCTGATGCTTGGAACTTGCCTGATGTGTGTTG]




>consensus_1973#1
GTATCAGCCGACCTGGGCTTACGAATTTGATGGCCACTATCAAGGAATTCCTGAAGTTGT
TGGCCGGAATGGGAATTGCTGATTGCTGTTGCTACTGTGCTGCGAGGGTATGATATCGAC
TAGATGCGAGAAGCTGCGACTGAAACTAGAATTGGGGGGAGAAGTGCTTGATGGTGTGAT
GATGATGGTGAATGCGCCCCGCCTGATGAGCGGTGAATGCGCCCCACCCTGATGAGTGTG
ATGAGTGACCCAAATGTGCTGATGCTTGGAACTTGCCTGATGTGTGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1973#0      GAATAGACTGAGGAATAGGGGATATGATATAGGTAACTGAGGANACCTGTGTGTTGAAAG 60
consensus_1973#1      ------------------------------------------------------------
                                                                                  

consensus_1973#0      CGTGATGCAAGCCGATCCTGGGCTGTGACGGAATGTTGATGCCGACTGATGCACAGGAAT 120
consensus_1973#1      ----GTATCAGCCGA-CCTGGGCT--TACGAATT--TGATGGCCACTATCA---AGGAAT 48
                           *   ****** ********   *** * *  ***** * ***       ******

consensus_1973#0      GTGCCTGAAGGTGTNTTGGGGCCGGAATGGGGAATTGGCTGATGTGCTGTGTGCTGACTG 180
consensus_1973#1      T--CCTGAAGTTGTT----GGCCGGAATGGGAATT--GCTGAT-TGCTGT-TGCT-ACTG 97
                         ******* ***     ************ * *  ****** ****** **** ****

consensus_1973#0      TCTGCGGAGGGTGATNAATGGACCAGATGCGAGAAGCTGCCGACTGAAACTCAGAATTGG 240
consensus_1973#1      TGCTGCGAGGGTATGATATCGACTAGATGCGAGAAGCTGC-GACTGAAACT-AGAATTGG 155
                      *     ******     ** *** **************** ********** ********

consensus_1973#0      GGGGGAGAAGTGCTTGATGNTGTGATGATGATGGTGAATGCGCCCCGCCTGAT-AGCGGT 299
consensus_1973#1      GGGG-AGAAGTGCTTGATGGTGTGATGATGATGGTGAATGCGCCCCGCCTGATGAGCGGT 214
                      **** ************** ********************************* ******

consensus_1973#0      GAATCGCCCCCCCTATAGTTATAGTACCCCAATTCTATCTTGAACNTCCTGATTGTGTGT 359
consensus_1973#1      GAATGCGCCCCACCCTGATGAGTGTGATGAG----TGACCCAAATGTGCTGATGCTTGG- 269
                      ****   **** *  *  * *  **          *  *   **  * *****  *  * 

consensus_1973#0      CAANCCAAAAGACCACGTGTGTTGTTTGATCTTGGAAAAAAAAAA 404
consensus_1973#1      -AACTTGCCTGA---TGTGTGTTG--------------------- 289
                       **       **    ********