cluster # 2073

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Oryza sativa
cluster # 2073 cluster # 2073 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2073#0 length = 389 sequences # 1

consensus_2073#1 length = 381 sequences # 1

consensusID : consensus_2073#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAACCCGGGGCCTCCCTTTTTTTTTTTTAAAATTGCCCCCCCCCAAAAAAATTTAGGGGGAAAAAACCCCCTTTTTCCTTAAAGCAAAAAAAAAACCGGGGGAAAAAAAAAAAAAACCAAGCCCGGGGGGGGAAAATAAAAAAACATAAAACAACGGGGGACCCCCCAAAAAGGGGGGGGAAACCTTTTCAATTCAAAAAAAAACATTTAACCGGGGTTTTTTTTAAAAAAAACGGTTTATTTCCCCCAAAATTCTTTAAACCCGGGGGGTTTGGGGGGAAAAAACCTTAAAACCCCCCCCCCCCTAACTT]

[+] EMBL CF335707             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAACCCGGGGCCTCCCTTTTTTTTTTTTAAAATTGCCCCCCCCCAAAAAAATTTAGGGGGAAAAAACCCCCTTTTTCCTTAAAGCAAAAAAAAAACCGGGGGAAAAAAAAAAAAAACCAAGCCCGGGGGGGGAAAATAAAAAAACATAAAACAACGGGGGACCCCCCAAAAAGGGGGGGGAAACCTTTTCAATTCAAAAAAAAACATTTAACCGGGGTTTTTTTTAAAAAAAACGGTTTATTTCCCCCAAAATTCTTTAAACCCGGGGGGTTTGGGGGGAAAAAACCTTAAAACCCCCCCCCCCCTAACTT]




>consensus_2073#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTAAAAAAAAAAAACCCGGGGCCTCCCTTTTTTTTTTTTAAAATTGCCCCCCC
CCAAAAAAATTTAGGGGGAAAAAACCCCCTTTTTCCTTAAAGCAAAAAAAAAACCGGGGG
AAAAAAAAAAAAAACCAAGCCCGGGGGGGGAAAATAAAAAAACATAAAACAACGGGGGAC
CCCCCAAAAAGGGGGGGGAAACCTTTTCAATTCAAAAAAAAACATTTAACCGGGGTTTTT
TTTAAAAAAAACGGTTTATTTCCCCCAAAATTCTTTAAACCCGGGGGGTTTGGGGGGAAA
AAACCTTAAAACCCCCCCCCCCCTAACTT

consensusID : consensus_2073#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAAAAAAAAAAACGCGGGGCCCCCCTTTTTTTTTTTCCAAAAGGCCCCCCCCCCAAAAAATTTTTGGGGAAAAAACCCCCCTTTTCTTTAAGTCAAAAAAAAAACGGGGGAAAAAAAAAAAAAAACCAAACCCGGGGGGGGAAAACAAAAAAAAAAAAAAAACCGGGGGACCCCCAAAAAAGGGGGGGGAAACCCTTCCTTTCCAAAAGGAACCCTTTACCCGGGGTTTTTTTTAACAAAACGGGTTTTTTGCCCCCAAAATTCTTTAAACCCGGGGGGTTTTGGGGGAAAAAACCTAAAAA]

[+] EMBL CF336419             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAAAAAAAAAAACGCGGGGCCCCCCTTTTTTTTTTTCCAAAAGGCCCCCCCCCCAAAAAATTTTTGGGGAAAAAACCCCCCTTTTCTTTAAGTCAAAAAAAAAACGGGGGAAAAAAAAAAAAAAACCAAACCCGGGGGGGGAAAACAAAAAAAAAAAAAAAACCGGGGGACCCCCAAAAAAGGGGGGGGAAACCCTTCCTTTCCAAAAGGAACCCTTTACCCGGGGTTTTTTTTAACAAAACGGGTTTTTTGCCCCCAAAATTCTTTAAACCCGGGGGGTTTTGGGGGAAAAAACCTAAAAA]




>consensus_2073#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTGGGAAAAAAAAAAAAAACGCGGGGCCCCCCTTTTTTTTTTTCCAAA
AGGCCCCCCCCCCAAAAAATTTTTGGGGAAAAAACCCCCCTTTTCTTTAAGTCAAAAAAA
AAACGGGGGAAAAAAAAAAAAAAACCAAACCCGGGGGGGGAAAACAAAAAAAAAAAAAAA
ACCGGGGGACCCCCAAAAAAGGGGGGGGAAACCCTTCCTTTCCAAAAGGAACCCTTTACC
CGGGGTTTTTTTTAACAAAACGGGTTTTTTGCCCCCAAAATTCTTTAAACCCGGGGGGTT
TTGGGGGAAAAAACCTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2073#0      -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55
consensus_2073#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                           *******************************************************

consensus_2073#0      TTTTTTTTTTTTTT-----AAAAAAAAAAAACCCGGGGCCTCCCTTTTTTTTTTTTAAAA 110
consensus_2073#1      TTTTTTTTTTTTTTGGGAAAAAAAAAAAAAACGCGGGGCCCCCCTTTTTTTTTTTCCAAA 120
                      **************     ************* ******* **************  ***

consensus_2073#0      TTGCCCCCCCCCAAAAAAATTTAGGGGGAAAAAACCCCCTTTTTCCTTAAAGCAAAAAAA 170
consensus_2073#1      AGGCCCCCCCCCCAAAAAATTTTTGGGGAAAAAACCCCCCTTTTCTTTAAGTCAAAAAAA 180
                        ********** *********  *************** ***** ****  ********

consensus_2073#0      AAACCGGGGGAAAAAAAAAAAAAACCAAGCCCGGGGGGGGAAAATAAAAAAACATAAAAC 230
consensus_2073#1      AAACGGGGGAAAAAAAAAAAAAAACCAAACCCGGGGGGGGAAAACAAAAAAAAAAAAAAA 240
                      **** **** ****************** *************** ******* * **** 

consensus_2073#0      AACGGGGGACCCCCCAAAAAGGGGGGGGAAACCTTTTCAATTCAAAAAAAAACATTTAAC 290
consensus_2073#1      ACCGGGGGACCCCCAAAAAAGGGGGGGGAAACCCTTCCTTTCCAAAAGGAACCCTTTACC 300
                      * ************ ****************** ** *  * *****  ** * **** *

consensus_2073#0      CGGGGTTTTTTTTAAAAAAAACGGTTTATTTCCCCCAAAATTCTTTAAACCCGGGGGGTT 350
consensus_2073#1      CGGGGTTTTTTTTAACAAAACGGGTTTTTTGCCCCCAAAATTCTTTAAACCCGGGGGGTT 360
                      *************** ****  ***** ** *****************************

consensus_2073#0      TGGGGGGAAAAAACCTTAAAACCCCCCCCCCCCTAACTT 389
consensus_2073#1      TTGGGGGAAAAAACCTAAAAA------------------ 381
                      * ************** ****