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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTACTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTCTTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCGTTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCTACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTGTACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGGGGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGCGCCGTTCTTTCCCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCCCCCNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC]
[+] EMBL CA757950 [AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTACTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTCTTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCGTTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCTACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTGTACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGGGGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGCGCCGTTCTTTCCCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCCCCCNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC]
consensusID : consensus_2078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[CCGCTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACTGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAGGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCATGCCCCTTTTCTGTCTCTACAATTTACATGGAAGAGAAGTGCATCAACACGAAATCATGGATCAATCCATGGTGACGAGCCTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTGAAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTACCCAAA]
[+] EMBL BQ908861 [CCGCTTTCAGCCGTTGCTGCCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACTGCGGCAGCCCTACAGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAATGCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTAGGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCATGCCCCTTTTCTGTCTCTACAATTTACATGGAAGAGAAGTGCATCAACACGAAATCATGGATCAATCCATGGTGACGAGCCTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTGAAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTACCCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2078#0 AAAGGCTGCGACAGGAGGTCAAGCTAGGAGTTGTGTTGAAAGAGCAAATGGACTACCTTA 60
consensus_2078#1 ------------------------------------------------------------
consensus_2078#0 CTCACTGGGCAGCATTGGAAACAGAACATTCTACTTCTTTATCTAGTGCAATTGAAGCTC 120
consensus_2078#1 ------------------------------------------------------------
consensus_2078#0 TTAGAGCAAGCACACTACGGCTTCCAGTTACAGGAGGAGCAAAGGCTGACGTTTTTACCG 180
consensus_2078#1 ------------------------------------------------------------
consensus_2078#0 TTAAGAATGCTGTCAGTTCAGCAGTTGACATTATGCAAGCAATGGGCTCATCCGTCTGCT 240
consensus_2078#1 ------------------------------------------------------------
consensus_2078#0 ACTTGTTATCAAAGTTACAGGCTACACACTCTCTGGTTACAGAACTTTCAGCCGTTGCTG 300
consensus_2078#1 -----------------------------------------CCGCTTTCAGCCGTTGCTG 19
****************
consensus_2078#0 CCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACCGCGGCAGCCCTAC 360
consensus_2078#1 CCAATGAAAGCTCCATGCTCAATGAGTATAGAGAACTCTTAGGTACTGCGGCAGCCCTAC 79
********************************************** *************
consensus_2078#0 AGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAAT 420
consensus_2078#1 AGGTCCTAGAGTCCAGCCTAAGGACACAACTCATACAAGAAACTGAGTGAACAGCTTAAT 139
************************************************************
consensus_2078#0 GCATGTATGTCTAACTAATTAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGT 480
consensus_2078#1 GCATGTATGTCTAACTAAGAAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGT 199
****************** ****************************************
consensus_2078#0 AGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTC 540
consensus_2078#1 AGCTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTC 259
************************************************************
consensus_2078#0 TAGTTAAGGGGTTTACCCATTTCTTGTTTTGTACTTACTGCATGCCCCTCTTTGTGTCTG 600
consensus_2078#1 TAGTTA-GGTGTTTTCCCATTTCTTCTTTTGTACTTCCTGCATGCCCCT-TTTCTGTCTC 317
****** ** **** ********** ********** ************ *** *****
consensus_2078#0 TACAATTTACCTGGAGAGAGAAGGGGCGTGGGGCCGCAAATGGTGGGTGAACGGGCTGGG 660
consensus_2078#1 TACAATTTACATGGA-AGAGAAGTG-CATCAACACG-AAATCATGGATCAATCCA-TGGT 373
********** **** ******* * * * ** **** *** * ** ***
consensus_2078#0 GGCGCGCGCCGGGGGTGGCGCCTTTCTCCTCTCCTCNTCTNTCTCCCCGC-GCCGTTCTT 719
consensus_2078#1 GACGAGC-CTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTG 432
* ** ** * * ** *** * *** * *** *** **
consensus_2078#0 TC-CCGCCTCTTTCCCGCCCGCCTTCNTCCTTCTCTTCCCCCCCCCCCCCCTNTTGCTCC 778
consensus_2078#1 AAACTGAAAACTTGTTGTAAAGATTAGCTCTTCTCTTCCCCNTCTTACCCAAA------- 485
* * ** * ** ************ * ***
consensus_2078#0 CCCNCCNCAATATTTTCTCCTCNTTTTTCCTTCCTTCTCTCTCCCACAC 827
consensus_2078#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||