|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1373 fasta sequence
[TACTGGAGAGAAAAATTAATTAAGCAGCTTCTTCCATTCAGACATAGGTCGATCCATCGCGATTCTTCCATGGACGTCGACGAGCTGTTGTTGATAGCAATCAGCCATGGAAACAACGAAGACGGTAGCGACGGGGTTGTCGGGATATCGGACGAGGTGTACGCCGCGGAGCTCCAGCTCCAAGAGTTGATCATGTCGTCCGCCATGGCGGCCACCGCTGCGGCGGCGGCAGATCAGCTTGACAGCGGTAGCGCCGTCCACGCGTCGAGCGAGGACGCAGCAGCTGCAGCTCATGCGAAGACGTCTCCATCCTCCGCTCTCGTCCCCGCCGCCGAGTGCTCGTCCTCCTCGGCAGCGGCCATGACCCTTGTCGCCAGCGTCGTCAAGTGCTCCTGCTCCTCGTCAGCTATGGCACCGTCGGCCACCACCACGTCGTTCCTCTTCTGCAAGATCTGCATGGACGACGTGCCGGCGTCCGACGCGCACCGCGGCAGCCACGGCTGCGCGCACGCCTTCTGCGCCGCCTGCCTCGCCGGCCACATCGCCGCTAAGCTCCACTCCGGCGGCGGCGTCTACTGCCCCGAGGATGGCTGCGCCAGCGCGGTCGACCCGGAGCTCTGCCAACCCATCCTCCCAGAGGACAACTTCGAGCGGTGGTGCGCCGCGCTGTGCCGGGCCATGGTGCTCGGAGGCCGCCACGTGTACTGCCCGTTCACGGACTGCGCAGAGATCATCGCCGACGAGCGGGGCGGCGACAGCGACGGCCAGCCGACGGAGTGCCCGGCGTGCCGGAGGCGGTTCTGCGAGCGGTGCGGCGTGGCGTGGCACGGAGGCGTGAGCTGCGGCGAGTACGGGGAGCTGGCGGTGGGGGACAGGGGGGAGGGGGACCTGGCGGTGGTGGAGATGGCCAAGGGGAGCAGGTGGCGGCGGTGCCCGCGGTGCGAGTTCTTCGTGGACAGGTACGAAGGCTGCTCGCACATCACCTGCAGGTGCGGGCTGGAGTTCTGCTACGGGTGTGGCCAGGAATGGGGGCCTACTGGTCATTCCTCGTGTCAGCGACCTTGAAACACCTGGATGGTCGGGATTCGGATGCTGGACATGCCCCGTCAGTCAAACTATTATAACTAGTGTTATGTTATCACCTGTTAATCTGCTATCTATCCGAATTTAATTCATCTTAGGTTTAGATCTCGGTGCCAGCTCTTTACACCTAAATTTGGTATCTAGTAATTATAGTCGTTGAGATAGATAAAAAACAAGTGTGCAGTCCAACTATTTTTTACTATTGCTAGTATTGTTAGCTGTTTTCTATCCAATTTAATTGGTGGTTTAAGTCATGTATTATTTTTTTTTGAGAATTTATGTCATGTACT]
[+] EMBL AK069582 [TACTGGAGAGAAAAATTAATTAAGCAGCTTCTTCCATTCAGACATAGGTCGATCCATCGCGATTCTTCCATGGACGTCGACGAGCTGTTGTTGATAGCAATCAGCCATGGAAACAACGAAGACGGTAGCGACGGGGTTGTCGGGATATCGGACGAGGTGTACGCCGCGGAGCTCCAGCTCCAAGAGTTGATCATGTCGTCCGCCATGGCGGCCACCGCTGCGGCGGCGGCAGATCAGCTTGACAGCGGTAGCGCCGTCCACGCGTCGAGCGAGGACGCAGCAGCTGCAGCTCATGCGAAGACGTCTCCATCCTCCGCTCTCGTCCCCGCCGCCGAGTGCTCGTCCTCCTCGGCAGCGGCCATGACCCTTGTCGCCAGCGTCGTCAAGTGCTCCTGCTCCTCGTCAGCTATGGCACCGTCGGCCACCACCACGTCGTTCCTCTTCTGCAAGATCTGCATGGACGACGTGCCGGCGTCCGACGCGCACCGCGGCAGCCACGGCTGCGCGCACGCCTTCTGCGCCGCCTGCCTCGCCGGCCACATCGCCGCTAAGCTCCACTCCGGCGGCGGCGTCTACTGCCCCGAGGATGGCTGCGCCAGCGCGGTCGACCCGGAGCTCTGCCAACCCATCCTCCCAGAGGACAACTTCGAGCGGTGGTGCGCCGCGCTGTGCCGGGCCATGGTGCTCGGAGGCCGCCACGTGTACTGCCCGTTCACGGACTGCGCAGAGATCATCGCCGACGAGCGGGGCGGCGACAGCGACGGCCAGCCGACGGAGTGCCCGGCGTGCCGGAGGCGGTTCTGCGAGCGGTGCGGCGTGGCGTGGCACGGAGGCGTGAGCTGCGGCGAGTACGGGGAGCTGGCGGTGGGGGACAGGGGGGAGGGGGACCTGGCGGTGGTGGAGATGGCCAAGGGGAGCAGGTGGCGGCGGTGCCCGCGGTGCGAGTTCTTCGTGGACAGGTACGAAGGCTGCTCGCACATCACCTGCAGGTGCGGGCTGGAGTTCTGCTACGGGTGTGGCCAGGAATGGGGGCCTACTGGTCATTCCTCGTGTCAGCGACCTTGAAACACCTGGATGGTCGGGATTCGGATGCTGGACATGCCCCGTCAGTCAAACTATTATAACTAGTGTTATGTTATCACCTGTTAATCTGCTATCTATCCGAATTTAATTCATCTTAGGTTTAGATCTCGGTGCCAGCTCTTTACACCTAAATTTGGTATCTAGTAATTATAGTCGTTGAGATAGATAAAAAACAAGTGTGCAGTCCAACTATTTTTTACTATTGCTAGTATTGTTAGCTGTTTTCTATCCAATTTAATTGGTGGTTTAAGTCATGTATTATTTTTTTTTGAGAATTTATGTCATGTACT]
consensusID : consensus_2498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence
[TTAACCATTTGTAAAACTATTACTCCCAGTAAAACTTTTAGTTACGGTAATTCAGGTTATCACTACATATTTTAGATTGGGCAAAATTTGCTACAGGACACTCAAAAAACATGTAATTGGCTATGAAACATCGCAAAAACGTGACACGGCTGATGGACACTACAAAAATTGTGTAATTGGCTATAGGACACCGGTCGCATTATTTTATTATTTTCGGTTCAAAAGAGGTGAGAATTTTTTCCAAATGACGAGATTGCCCCTGTGCCATCTTCCTTCACCCGAAATCACAAATTTTTTGTAGCTGCCGGCGAGGTAGCTGGCGGTGGTGACCGCGCGCCAGGAGCAGCAGACGGCGCGGAGGCGGACGTGGTTGGAAGGGACGGGAGCTGGAGGAGCACGAGCCCTAGCAGGTCCGCCAAGAGATCCTACCACGGCGGCGATGGCTGTTGCGCTGCCGCCATCCTCCTCCTCCTCGTCGGTGCCGGCGGCAGAGCTTGACAGCGGTAACGCCATCCACGCGTCGAGCGAGGACACAGCAGCTGCAGCTCATGCGGAGACGTCTCCATCCTCCGCTCTCGTCCCCGGCGCCGCCACCACCGAGTGCTCGTCCAGCGTCGGCAAGTGCTCTCCATCCTGCAGCCATGACCCTTGTCGCTAGCGTCGGCAAGTGCTCCTGCTCCTCATCAACTGTGCCGCTGCCCGTCCTCTTCTGCAAGATCTGCATGGATGACGTGCCGACGTCCGACGCGCACCGCGGCAGCCACAGCTGCGCGCACGCATTCTACGCCACCTGCCT]
[-] EMBL AK111372 [TTAACCATTTGTAAAACTATTACTCCCAGTAAAACTTTTAGTTACGGTAATTCAGGTTATCACTACATATTTTAGATTGGGCAAAATTTGCTACAGGACACTCAAAAAACATGTAATTGGCTATGAAACATCGCAAAAACGTGACACGGCTGATGGACACTACAAAAATTGTGTAATTGGCTATAGGACACCGGTCGCATTATTTTATTATTTTCGGTTCAAAAGAGGTGAGAATTTTTTCCAAATGACGAGATTGCCCCTGTGCCATCTTCCTTCACCCGAAATCACAAATTTTTTGTAGCTGCCGGCGAGGTAGCTGGCGGTGGTGACCGCGCGCCAGGAGCAGCAGACGGCGCGGAGGCGGACGTGGTTGGAAGGGACGGGAGCTGGAGGAGCACGAGCCCTAGCAGGTCCGCCAAGAGATCCTACCACGGCGGCGATGGCTGTTGCGCTGCCGCCATCCTCCTCCTCCTCGTCGGTGCCGGCGGCAGAGCTTGACAGCGGTAACGCCATCCACGCGTCGAGCGAGGACACAGCAGCTGCAGCTCATGCGGAGACGTCTCCATCCTCCGCTCTCGTCCCCGGCGCCGCCACCACCGAGTGCTCGTCCAGCGTCGGCAAGTGCTCTCCATCCTGCAGCCATGACCCTTGTCGCTAGCGTCGGCAAGTGCTCCTGCTCCTCATCAACTGTGCCGCTGCCCGTCCTCTTCTGCAAGATCTGCATGGATGACGTGCCGACGTCCGACGCGCACCGCGGCAGCCACAGCTGCGCGCACGCATTCTACGCCACCTGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2498#0 TACTGGAGAGAAAAATTAATTAAGCAGCTTCTTCCATTCAGACATAGGTCGATCCATCGC 60
consensus_2498#1 --------TTAACCATTTGTAAAACTATTACTCCCAGTAAAACTT-------TTAGTTAC 45
** *** * ** * * ** *** * * ** * * * *
consensus_2498#0 GATTCTTCCATGGACGTCGACGAGCTGTTG-TTGATAGCAATCAGCCATGGAAACAACGA 119
consensus_2498#1 GGTAATTCAGGTTATCACTACATATTTTAGATTGGGCAAAATTTGCTACAGGA-CACTCA 104
* * *** * * ** * * * *** *** ** * * * ** *
consensus_2498#0 AGACGGTAGCGACGGGGTTGTCGGGATATCGGACGAGGTGTACGCCGCGGAGCTCCAGCT 179
consensus_2498#1 AAAAACATGTAATTGGCTA--TGAAACATCGCAAAAACGTGACACGGCTGATGGACA-CT 161
* * * * ** * * * **** * * ** * ** ** ** **
consensus_2498#0 CCAAGAGTTGATCATGTCGTCCGCCATGGCGGCCACCGCTGCGGCGGCGGCAGATCAGCT 239
consensus_2498#1 ACAAAAATTG----TGTAATTGGCTATAG--GACACCGGT----------CGCATTATTT 205
*** * *** *** * ** ** * * ***** * * ** * *
consensus_2498#0 TGACAGCGGTAGCGCCGTCCACGCGTCGAGCGAGGACGCAGCAGCTGCAGCTCATGCGAA 299
consensus_2498#1 TATTA------------TTTTCGGTTCAAAAGAGGTGAGAATTTTT----TCCAAATGAC 249
* * * ** ** * **** * * ** **
consensus_2498#0 GACGTCTCCATCCTCCGCTCTCGTCCCCGCCGCCGAGTGCTCGTCCTCCTCGGCAGCGGC 359
consensus_2498#1 GAGATTGCC--CCTGTGCCATC-TTCCTTCACCCGAAATCACAAATTTTTTG-TAGCTGC 305
** * ** *** ** ** * ** * **** * * * * * *** **
consensus_2498#0 CATGACCCTTGTCGCCAGCGTCGTCAAGTGCTCCTGCTCCTCGTCAGCTATGGCACCGTC 419
consensus_2498#1 CG---GCGAGGTAGCTGGCGGTGGTGACCGCGCGCCAGGAGCAGCAGACGGCGCGGAGGC 362
* * ** ** *** * * ** * * *** ** * *
consensus_2498#0 GGCCACCACCACGTCGTTCCTCTTCTGCAAGATCTGCATGGACGACGTGCCGGCGTCCGA 479
consensus_2498#1 GGACGTGGTTGGAAGGGACGGGAGCTGGAGGAGCACGAGCCCTAGCAGGTCCGCCAAGAG 422
** * * * *** * ** * * * * * **
consensus_2498#0 CGCGCACCGCGGCAGCCACGGCTGC-GCGCACGCCTTCTGCGCCGCCTGCCTCGCCGGCC 538
consensus_2498#1 ATCCTACCACGGCGGCGATGGCTGTTGCGC-TGCCGCCATCCTCCTCCTCCTCGTCGGTG 481
* *** **** ** * ***** **** *** * * * * ***** ***
consensus_2498#0 ACATCGCCGCTAAGCTCCACTCCGGCGGCGGCGTCTACTGCCCCGAGGATGGCTGCGCCA 598
consensus_2498#1 CCG--GCGGCAGAGCTTGACAGCGGTAACGCCATCCAC-GCGTCGAGCGAGGACACAGCA 538
* ** ** **** ** *** ** * ** ** ** **** ** * **
consensus_2498#0 GC-GCGGTCGACCCGGAGCTCTGCCAACCCATCCTCCCAGAGGACAACTTCGAGCGGTGG 657
consensus_2498#1 GCTGCAGCTCATGCGGAGACGTCTCCATCCTCCGCTCTCG-------TCCCCGGCGCCGC 591
** ** * * ***** * * * ** * * * * *** *
consensus_2498#0 TGCGCCGCGCTGTGCCGGGCCATGGTGCTCGGAGGCCGCCACGTGTACTGCCCGTTCACG 717
consensus_2498#1 --CACCACCGAGTGCTCGTCCAGCGT---CGGCAAGTGCTCTCCATCCTGC--AGCCATG 644
* ** * **** * *** ** *** ** * **** ** *
consensus_2498#0 GACTGCGCAGAGATCATCGCCGACGAGCGGGGCGGCGACAGCGACGGCCAGCCGACGGAG 777
consensus_2498#1 ACCCTTGTCG---CTAGCGTCGGCAAGTGCTCCTGCT-CCTCATCAACTGTGCCGCTGCC 700
* * * * ** ** * ** * * ** * * * * * * *
consensus_2498#0 TGCCCGGCGTGCCGGAGGCGGTTCTGCGAGCGGTGCGGCGTGGCGTGGCACGGAG-GCGT 836
consensus_2498#1 CGTCC--TCTTCTGCAAG-ATCTGCATGGATGACGTGCCGACGTCCGACGCGCACCGCGG 757
* ** * * * * * * * * * * ** * * * ** * ***
consensus_2498#0 GAGCTGCGGC-GAGTACGGGGAGCTGGCGGTGGGGGACAGGGGGGAGGGGGACCTGGCGG 895
consensus_2498#1 CAGCCACAGCTGCGCGCACGCATTCTACGCCACCTGCCT--------------------- 796
*** * ** * * * * * ** * *
consensus_2498#0 TGGTGGAGATGGCCAAGGGGAGCAGGTGGCGGCGGTGCCCGCGGTGCGAGTTCTTCGTGG 955
consensus_2498#1 ------------------------------------------------------------
consensus_2498#0 ACAGGTACGAAGGCTGCTCGCACATCACCTGCAGGTGCGGGCTGGAGTTCTGCTACGGGT 1015
consensus_2498#1 ------------------------------------------------------------
consensus_2498#0 GTGGCCAGGAATGGGGGCCTACTGGTCATTCCTCGTGTCAGCGACCTTGAAACACCTGGA 1075
consensus_2498#1 ------------------------------------------------------------
consensus_2498#0 TGGTCGGGATTCGGATGCTGGACATGCCCCGTCAGTCAAACTATTATAACTAGTGTTATG 1135
consensus_2498#1 ------------------------------------------------------------
consensus_2498#0 TTATCACCTGTTAATCTGCTATCTATCCGAATTTAATTCATCTTAGGTTTAGATCTCGGT 1195
consensus_2498#1 ------------------------------------------------------------
consensus_2498#0 GCCAGCTCTTTACACCTAAATTTGGTATCTAGTAATTATAGTCGTTGAGATAGATAAAAA 1255
consensus_2498#1 ------------------------------------------------------------
consensus_2498#0 ACAAGTGTGCAGTCCAACTATTTTTTACTATTGCTAGTATTGTTAGCTGTTTTCTATCCA 1315
consensus_2498#1 ------------------------------------------------------------
consensus_2498#0 ATTTAATTGGTGGTTTAAGTCATGTATTATTTTTTTTTGAGAATTTATGTCATGTACT 1373
consensus_2498#1 ----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||