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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2073 fasta sequence
[TAAACGCGACGGTGCCCGCGTTGTACGTGGGCGATCTCCACGAAAGCGTGCGGGAGGAGCACCTGCTCGAGGTGTTCGGCAAGATTGGCACCCTCACGTCCGTGCGCGTCTGCCGCGACAATGCCACGAGCAACTCCCTCAGATATGGATACGTGAATTACCTCTCCCAGGCTGACGCTGCAATTGCTTTGGAGAAACTAAATCATAGTCTTATTTTGGATAAGCCGATCAGAGTAATGTGGTCTAACCGAGATCCAGATGCTAGGAGAAGTGGGGTTGGAAATGTGTTTGTTAAGAATCTTAATGATTTAGTTGACAATGTAAGTCTACAAGAATTATTTTGCAAGTTTGGAGATATATTATCTTGTAAAGTCGCTAAAAATGAGGATGGGACAAGTAGAGGCTATGGATTTGTTCAATTTGCGTTGCAAGAATCAGCAGATGCATCAATTCAAAATCTTAACAACTCTCATTTTTGTGGCAGGCAATTGCATGTTGCTACATTTATTAAGAAGAGTGAACGATCTACAAACAATGATGACAAATATACTAACCTATACATGAAGAACCTTGATGATGATATAACAGAGGAACTTATTAAGTTAAAGTTCTCTCAGTATGGTTTAGTAATTAGTGTAAAGATAATGAAAAGAGATGATGGGACATCTAAGGGCTTTGGGTTTGTAAGTTTTCAAAACCCAGAAAGTGCCAAAAGAGCAAAAGAATCCATGAACGGGATGCTACTTGGATCAAAAACCTTGTATGTAGCAAGAGCTCAAAAGAAAGCTGAAAGGAAACAATATTTGCAACGCTTACACGAGGAGAAGAGAAATGAAATAATCACCAAGAGCAATGGGTCGAATGTCTATATAAAAAATATTAATGATGAAGTTGGCGACGATGCTCTCCGTGAACGGTTCAATGAATTTGGAAACATTACATCAGCAAAGATTATGCGTGATGAAAAGGGTATTAGCAAAGGATTTGGATTTGTATGTTACAACACACCTGAGGAAGCAAAATGTGCTGTAAGCAACATGCGTGGTGTAATGTTTTATGGCAAACCATTGTACGTTGCTATTGCTCAAAGGAAAGAGGAAAGACGAGCCAAACTAGAGCAACGTTTTGCTGAGCTTGCAACGATGGTTGGAGCTACAAGTCCTGTCATACCCACAGGATATCCTCAATTTTACTTTGCCCACCCTAGTACACATCTCCCTCAAAGTCCAGGGAGACAAGGATTTATGTATCCACCCATAGGGATTAGTCAAGAATGGAGGCATAACATGTTTCCCTCGTCACATAATATCCAACAAATACATTCACCGATTATGCGAAATACTCCACGGCAATACAGAAACAACAGGGGAAGGATGAATGGAAATATGATGCATTTTCACCACACTGTGAACTATGTTCCACATGCGCAGCCAGCTAAAGAATTCATGTCCATGTCCCGACAGCGATTTAGCCATGCTAAGTATATTCCAAATGACATCATGGCCAATGGATTGGCTATTCATCATGGTGACTCTATTTCATCGATGAATGACGCTTTTAACAACCTGCTAGCTACTGCTCCACCCGAGGAACAGAAGAACATGCTTGGGAATAGACTATATCCGTTGGTTGAGAGACATCATCCTGACCTTGCCAGTAAAATCACTGGAATGTTACTTGAGCTAGGTAATTCTGAAGTGGTCATGCTACTTTACTCATCAAACATGTTGTCTGCCAAAATAGAGGAGTGTGTCAAACTGCTCCAAGAGGTAAAACCCAAACCTGAAGATCAAGAGGCCCTGCACCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCCAATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTAGATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTTATAGAACTTACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTTACGAATCTTAGATAATAAATTATATATGATGGTG]
[+] EMBL AK070850 [TAAACGCGACGGTGCCCGCGTTGTACGTGGGCGATCTCCACGAAAGCGTGCGGGAGGAGCACCTGCTCGAGGTGTTCGGCAAGATTGGCACCCTCACGTCCGTGCGCGTCTGCCGCGACAATGCCACGAGCAACTCCCTCAGATATGGATACGTGAATTACCTCTCCCAGGCTGACGCTGCAATTGCTTTGGAGAAACTAAATCATAGTCTTATTTTGGATAAGCCGATCAGAGTAATGTGGTCTAACCGAGATCCAGATGCTAGGAGAAGTGGGGTTGGAAATGTGTTTGTTAAGAATCTTAATGATTTAGTTGACAATGTAAGTCTACAAGAATTATTTTGCAAGTTTGGAGATATATTATCTTGTAAAGTCGCTAAAAATGAGGATGGGACAAGTAGAGGCTATGGATTTGTTCAATTTGCGTTGCAAGAATCAGCAGATGCATCAATTCAAAATCTTAACAACTCTCATTTTTGTGGCAGGCAATTGCATGTTGCTACATTTATTAAGAAGAGTGAACGATCTACAAACAATGATGACAAATATACTAACCTATACATGAAGAACCTTGATGATGATATAACAGAGGAACTTATTAAGTTAAAGTTCTCTCAGTATGGTTTAGTAATTAGTGTAAAGATAATGAAAAGAGATGATGGGACATCTAAGGGCTTTGGGTTTGTAAGTTTTCAAAACCCAGAAAGTGCCAAAAGAGCAAAAGAATCCATGAACGGGATGCTACTTGGATCAAAAACCTTGTATGTAGCAAGAGCTCAAAAGAAAGCTGAAAGGAAACAATATTTGCAACGCTTACACGAGGAGAAGAGAAATGAAATAATCACCAAGAGCAATGGGTCGAATGTCTATATAAAAAATATTAATGATGAAGTTGGCGACGATGCTCTCCGTGAACGGTTCAATGAATTTGGAAACATTACATCAGCAAAGATTATGCGTGATGAAAAGGGTATTAGCAAAGGATTTGGATTTGTATGTTACAACACACCTGAGGAAGCAAAATGTGCTGTAAGCAACATGCGTGGTGTAATGTTTTATGGCAAACCATTGTACGTTGCTATTGCTCAAAGGAAAGAGGAAAGACGAGCCAAACTAGAGCAACGTTTTGCTGAGCTTGCAACGATGGTTGGAGCTACAAGTCCTGTCATACCCACAGGATATCCTCAATTTTACTTTGCCCACCCTAGTACACATCTCCCTCAAAGTCCAGGGAGACAAGGATTTATGTATCCACCCATAGGGATTAGTCAAGAATGGAGGCATAACATGTTTCCCTCGTCACATAATATCCAACAAATACATTCACCGATTATGCGAAATACTCCACGGCAATACAGAAACAACAGGGGAAGGATGAATGGAAATATGATGCATTTTCACCACACTGTGAACTATGTTCCACATGCGCAGCCAGCTAAAGAATTCATGTCCATGTCCCGACAGCGATTTAGCCATGCTAAGTATATTCCAAATGACATCATGGCCAATGGATTGGCTATTCATCATGGTGACTCTATTTCATCGATGAATGACGCTTTTAACAACCTGCTAGCTACTGCTCCACCCGAGGAACAGAAGAACATGCTTGGGAATAGACTATATCCGTTGGTTGAGAGACATCATCCTGACCTTGCCAGTAAAATCACTGGAATGTTACTTGAGCTAGGTAATTCTGAAGTGGTCATGCTACTTTACTCATCAAACATGTTGTCTGCCAAAATAGAGGAGTGTGTCAAACTGCTCCAAGAGGTAAAACCCAAACCTGAAGATCAAGAGGCCCTGCACCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCCAATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTAGATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTTATAGAACTTACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTTACGAATCTTAGATAATAAATTATATATGATGGTG]
consensusID : consensus_2693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[GCCGGTCCCAGGCCCAGGCCATCCACCGGCGCTAATACACCTCACCATAGGGACCATGTGCCCAAGCGGACCCCGCTCCGGGTACCCGGTACCCCTAACCCTACCCCCAGGCAAGCGGCCTTTACCACCCCGCTACGTATTGCTCCCCCCGAGCAACAGAAGACCATGCTTGGCAATAGGCCATATCCGTGGCTGAGAGACCTCATCCTGACCTCGCCCGTAAAACCACCGAAATGTCCCTTGACCTAGGTAATTCTGAAGTGGTCGTCCTCCTTTCCTCATCCAACATGTTGTCTCCCAAAATAGAGGAGTGTGTCAAACTGCTCCAAAAGGTAAAACCCCAACCTGAAGATCAAGAGGCCCTGCCCCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCCAATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTAGATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTAATAGAACTTACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTTACGAATCTTAGATAATAAATTATATATGATGGTGTTCTTGTGTTATAAAAAAAAAAAAAAA]
[-] EMBL CA763394 [GCCGGTCCCAGGCCCAGGCCATCCACCGGCGCTAATACACCTCACCATAGGGACCATGTGCCCAAGCGGACCCCGCTCCGGGTACCCGGTACCCCTAACCCTACCCCCAGGCAAGCGGCCTTTACCACCCCGCTACGTATTGCTCCCCCCGAGCAACAGAAGACCATGCTTGGCAATAGGCCATATCCGTGGCTGAGAGACCTCATCCTGACCTCGCCCGTAAAACCACCGAAATGTCCCTTGACCTAGGTAATTCTGAAGTGGTCGTCCTCCTTTCCTCATCCAACATGTTGTCTCCCAAAATAGAGGAGTGTGTCAAACTGCTCCAAAAGGTAAAACCCCAACCTGAAGATCAAGAGGCCCTGCCCCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCCAATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTAGATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTAATAGAACTTACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTTACGAATCTTAGATAATAAATTATATATGATGGTGTTCTTGTGTTATAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2693#0 TAAACGCGACGGTGCCCGCGTTGTACGTGGGCGATCTCCACGAAAGCGTGCGGGAGGAGC 60
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 ACCTGCTCGAGGTGTTCGGCAAGATTGGCACCCTCACGTCCGTGCGCGTCTGCCGCGACA 120
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 ATGCCACGAGCAACTCCCTCAGATATGGATACGTGAATTACCTCTCCCAGGCTGACGCTG 180
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 CAATTGCTTTGGAGAAACTAAATCATAGTCTTATTTTGGATAAGCCGATCAGAGTAATGT 240
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 GGTCTAACCGAGATCCAGATGCTAGGAGAAGTGGGGTTGGAAATGTGTTTGTTAAGAATC 300
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 TTAATGATTTAGTTGACAATGTAAGTCTACAAGAATTATTTTGCAAGTTTGGAGATATAT 360
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 TATCTTGTAAAGTCGCTAAAAATGAGGATGGGACAAGTAGAGGCTATGGATTTGTTCAAT 420
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 TTGCGTTGCAAGAATCAGCAGATGCATCAATTCAAAATCTTAACAACTCTCATTTTTGTG 480
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 GCAGGCAATTGCATGTTGCTACATTTATTAAGAAGAGTGAACGATCTACAAACAATGATG 540
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 ACAAATATACTAACCTATACATGAAGAACCTTGATGATGATATAACAGAGGAACTTATTA 600
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 AGTTAAAGTTCTCTCAGTATGGTTTAGTAATTAGTGTAAAGATAATGAAAAGAGATGATG 660
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 GGACATCTAAGGGCTTTGGGTTTGTAAGTTTTCAAAACCCAGAAAGTGCCAAAAGAGCAA 720
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 AAGAATCCATGAACGGGATGCTACTTGGATCAAAAACCTTGTATGTAGCAAGAGCTCAAA 780
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 AGAAAGCTGAAAGGAAACAATATTTGCAACGCTTACACGAGGAGAAGAGAAATGAAATAA 840
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 TCACCAAGAGCAATGGGTCGAATGTCTATATAAAAAATATTAATGATGAAGTTGGCGACG 900
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 ATGCTCTCCGTGAACGGTTCAATGAATTTGGAAACATTACATCAGCAAAGATTATGCGTG 960
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 ATGAAAAGGGTATTAGCAAAGGATTTGGATTTGTATGTTACAACACACCTGAGGAAGCAA 1020
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 AATGTGCTGTAAGCAACATGCGTGGTGTAATGTTTTATGGCAAACCATTGTACGTTGCTA 1080
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 TTGCTCAAAGGAAAGAGGAAAGACGAGCCAAACTAGAGCAACGTTTTGCTGAGCTTGCAA 1140
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 CGATGGTTGGAGCTACAAGTCCTGTCATACCCACAGGATATCCTCAATTTTACTTTGCCC 1200
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 ACCCTAGTACACATCTCCCTCAAAGTCCAGGGAGACAAGGATTTATGTATCCACCCATAG 1260
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 GGATTAGTCAAGAATGGAGGCATAACATGTTTCCCTCGTCACATAATATCCAACAAATAC 1320
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 ATTCACCGATTATGCGAAATACTCCACGGCAATACAGAAACAACAGGGGAAGGATGAATG 1380
consensus_2693#1 ------------------------------------------------------------
consensus_2693#0 GAAATATGATGCATTTTCACCACACTGTGAACTATGTTCCACATGCGCAGCCAGCTAAAG 1440
consensus_2693#1 -------------------------------------------------GCCGGTCCCAG 11
*** * **
consensus_2693#0 AATTCATGTCCATGTCCCGACAGCGATTTAGCCATGCTAAGTATATTCCAAATGACATCA 1500
consensus_2693#1 G--CCCAGGCCATCCACCGGCGCTAATACA-CCTCACCA--TAGGGACCATGTGCCCAAG 66
* * **** *** * ** * ** * * ** *** ** *
consensus_2693#0 TGGCCAATGGATTGGCTATTCATCATGG-TGACTCTATTTCATCGATGAATGACGCTTTT 1559
consensus_2693#1 CGGACCCCGCTCCGGGTACCCGGTACCCCTAACCCTACCCC-CAGGCAAGCG--GCCTTT 123
** * * ** ** * * * ** *** * * * * ** ***
consensus_2693#0 AACAACCTGCTAGCTACTGCTCCACCCGAGGAACAGAAGAACATGCTTGGGAATAGACTA 1619
consensus_2693#1 ACCACCCCGCTACGTATTGCTCCCCCCGAGCAACAGAAGACCATGCTTGGCAATAGGCCA 183
* ** ** **** ** ****** ****** ********* ********* ***** * *
consensus_2693#0 TATCCGTTGGTTGAGAGACATCATCCTGACCTTGCCAGTAAAATCACTGGAATGTTACTT 1679
consensus_2693#1 TATCCGT-GGCTGAGAGACCTCATCCTGACCTCGCCCGTAAAACCACCGAAATGTCCCTT 242
******* ** ******** ************ *** ****** *** * ***** ***
consensus_2693#0 GAGCTAGGTAATTCTGAAGTGGTCATGCTACTTTACTCATCAAACATGTTGTCTGCCAAA 1739
consensus_2693#1 GACCTAGGTAATTCTGAAGTGGTCGTCCTCCTTTCCTCATCCAACATGTTGTCTCCCAAA 302
** ********************* * ** **** ****** ************ *****
consensus_2693#0 ATAGAGGAGTGTGTCAAACTGCTCCAAGAGGTAAAACCCAAACCTGAAGATCAAGAGGCC 1799
consensus_2693#1 ATAGAGGAGTGTGTCAAACTGCTCCAAAAGGTAAAACCCCAACCTGAAGATCAAGAGGCC 362
*************************** *********** ********************
consensus_2693#0 CTGCACCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCC 1859
consensus_2693#1 CTGCCCCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCC 422
**** *******************************************************
consensus_2693#0 AATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTA 1919
consensus_2693#1 AATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTA 482
************************************************************
consensus_2693#0 GATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTTATAGAACTT 1979
consensus_2693#1 GATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTAATAGAACTT 542
************************************************** *********
consensus_2693#0 ACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTT 2039
consensus_2693#1 ACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTT 602
************************************************************
consensus_2693#0 ACGAATCTTAGATAATAAATTATATATGATGGTG-------------------------- 2073
consensus_2693#1 ACGAATCTTAGATAATAAATTATATATGATGGTGTTCTTGTGTTATAAAAAAAAAAAAAA 662
**********************************
consensus_2693#0 -
consensus_2693#1 A 663
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||