cluster # 2812

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Oryza sativa
cluster # 2812 cluster # 2812 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2812#0 length = 132 sequences # 1

consensus_2812#1 length = 90 sequences # 1

consensusID : consensus_2812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 132
fasta sequence

                              [CCAGCACATCTCCAGTCACTCCCATTTGCACACAGTCCAGAGCACATCGTCACCACCATGGGACCACACCCACACCACTGCTGCACTGCCTTCTGCACCACTGCACAGCAGCAGCAGCACACATCATTATTG]

[+] EMBL CB965209             [CCAGCACATCTCCAGTCACTCCCATTTGCACACAGTCCAGAGCACATCGTCACCACCATGGGACCACACCCACACCACTGCTGCACTGCCTTCTGCACCACTGCACAGCAGCAGCAGCACACATCATTATTG]




>consensus_2812#0
CCAGCACATCTCCAGTCACTCCCATTTGCACACAGTCCAGAGCACATCGTCACCACCATG
GGACCACACCCACACCACTGCTGCACTGCCTTCTGCACCACTGCACAGCAGCAGCAGCAC
ACATCATTATTG

consensusID : consensus_2812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 90
fasta sequence

                              [CATATGCACACATCCAGCACAATCGTCACCACCAGTGGGCCACACCCAACCACTGCTGCACTGCCCTCTGCACCACTGCACAGCAGCAGC]

[+] EMBL CB965939             [CATATGCACACATCCAGCACAATCGTCACCACCAGTGGGCCACACCCAACCACTGCTGCACTGCCCTCTGCACCACTGCACAGCAGCAGC]




>consensus_2812#1
CATATGCACACATCCAGCACAATCGTCACCACCAGTGGGCCACACCCAACCACTGCTGCA
CTGCCCTCTGCACCACTGCACAGCAGCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2812#0      CCAGCACATCTCCAGTCACTCCCATTTGCACACAGTCCAGAGCACATCGTCACCACCATG 60
consensus_2812#1      ----------------------CATATGCACACA-TCCAGCACA-ATCGTCACCACCAGT 36
                                            *** ******** *****  ** *************  

consensus_2812#0      GGACCACACCCACACCACTGCTGCACTGCCTTCTGCACCACTGCACAGCAGCAGCAGCAC 120
consensus_2812#1      GGGCCACACCCA-ACCACTGCTGCACTGCCCTCTGCACCACTGCACAGCAGCAGC----- 90
                      ** ********* ***************** ************************     

consensus_2812#0      ACATCATTATTG 132
consensus_2812#1      ------------