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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1358 fasta sequence
[TGTCTATCTTTTTTGTGTGTAGTACATAAATGCAAATAATGCGTCTCTTTTCTCTCATCATAGCCTTTCGATCGGTAGAAGCTAGAATGCCAGAGATGGTGAGGGCGTCAACAGCCATCTCTGCGGGAAGAGTCGTCGTCGTCGCCGGAGCGGCGGCGTTGGTGGTTGTCTTGCTGTGCGCGGCGCCGGCGCCGGCGGCCGTGGAAGCTGTCCCGGCCGGCGCCGAGGTCTCCGAGTTCCCGGGGTTCGACGGCGACCTCCCCTCCAAGCACTACGCTGGGTACATAACTGTTGGACATCAGCCGCTAAAGAGACATATGTATTACTATTTTGCCACTTCCGAAAGGAACTCAACCACTGACCCTGTCATCATCTGGATAAATGGTGGCCCAGCATGTTCAGGATCTAGTGCCTTTTTGCATTCAATCGGACCATTGAAAATAGAGGGACCCATGATTCATGCCAGAGATGAGCCAAGGACCAAGTTAAATCCTTTCTCATGGACCAAGATGTCTAGTGTCCTTTTGGTTGACTCACCAGCAGGAGTGGGCTATTCTTATTCTGAAAATGAAGATGACTATGTAACAAATGATACAAGCAGAGTATTGGACCTGTATGATTTTTTATCGAAGTGGTTTTCTGAATATCTTGAGTTTCTATCAAATCCTTTCTACATTGCCGGTTGCTCCTATAGTGGCGTGATAGTACCAGTTCTTGCACAAGAAATTCTGAAGCGAAATGAAGACAATGGCAGAATAAAGATAAATTTTAAGGGTTATTCACTGTGTAATCCAGCTGTTGATGTAGAAATTGAAAATAACGCGTTTGTACCTTATGCATTTCGAATGGGATTGATTTCAGATGAATTATATCAGAATTTAGTTAGTACGTGCAATGGGAAGTACTGGAATAACAAAGGCCCATCTTGTCTAGCAAACTTGGAACAGTTTCATAAGAAGCCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAGAATGCAATTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGGCTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAAATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCTGGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATAGATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATCTTAACTCAGTACCAATATACAATGGTGATATAACCTCTG]
[+] EMBL AK107401 [TGTCTATCTTTTTTGTGTGTAGTACATAAATGCAAATAATGCGTCTCTTTTCTCTCATCATAGCCTTTCGATCGGTAGAAGCTAGAATGCCAGAGATGGTGAGGGCGTCAACAGCCATCTCTGCGGGAAGAGTCGTCGTCGTCGCCGGAGCGGCGGCGTTGGTGGTTGTCTTGCTGTGCGCGGCGCCGGCGCCGGCGGCCGTGGAAGCTGTCCCGGCCGGCGCCGAGGTCTCCGAGTTCCCGGGGTTCGACGGCGACCTCCCCTCCAAGCACTACGCTGGGTACATAACTGTTGGACATCAGCCGCTAAAGAGACATATGTATTACTATTTTGCCACTTCCGAAAGGAACTCAACCACTGACCCTGTCATCATCTGGATAAATGGTGGCCCAGCATGTTCAGGATCTAGTGCCTTTTTGCATTCAATCGGACCATTGAAAATAGAGGGACCCATGATTCATGCCAGAGATGAGCCAAGGACCAAGTTAAATCCTTTCTCATGGACCAAGATGTCTAGTGTCCTTTTGGTTGACTCACCAGCAGGAGTGGGCTATTCTTATTCTGAAAATGAAGATGACTATGTAACAAATGATACAAGCAGAGTATTGGACCTGTATGATTTTTTATCGAAGTGGTTTTCTGAATATCTTGAGTTTCTATCAAATCCTTTCTACATTGCCGGTTGCTCCTATAGTGGCGTGATAGTACCAGTTCTTGCACAAGAAATTCTGAAGCGAAATGAAGACAATGGCAGAATAAAGATAAATTTTAAGGGTTATTCACTGTGTAATCCAGCTGTTGATGTAGAAATTGAAAATAACGCGTTTGTACCTTATGCATTTCGAATGGGATTGATTTCAGATGAATTATATCAGAATTTAGTTAGTACGTGCAATGGGAAGTACTGGAATAACAAAGGCCCATCTTGTCTAGCAAACTTGGAACAGTTTCATAAGAAGCCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAGAATGCAATTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGGCTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAAATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCTGGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATAGATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATCTTAACTCAGTACCAATATACAATGGTGATATAACCTCTG]
consensusID : consensus_2871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[CCAAAGAAGCCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAGAATGCAATATTGAAATATTACAAAAGTGGAAGAGATGCCCCAACTTTATCCAATACACAAGAGATATTCCAACTTTAACAGAGTATCACTTAAATGTAACATCCAAAGGTTACAGAGTGTTTTTATATAGTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGGCTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAAATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCTGGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATAGATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATCTTAACTCAGTACCAATATACAATGGTGATATAACCCTCTGTTTTGAGGCCAATGTGAAACAGTTTCAGGCAATAGATGTGCATGATACATGACTAGTTCT]
[+] EMBL CA764351 [CCAAAGAAGCCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAGAATGCAATATTGAAATATTACAAAAGTGGAAGAGATGCCCCAACTTTATCCAATACACAAGAGATATTCCAACTTTAACAGAGTATCACTTAAATGTAACATCCAAAGGTTACAGAGTGTTTTTATATAGTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGGCTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAAATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCTGGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATAGATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATCTTAACTCAGTACCAATATACAATGGTGATATAACCCTCTGTTTTGAGGCCAATGTGAAACAGTTTCAGGCAATAGATGTGCATGATACATGACTAGTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2871#0 TGTCTATCTTTTTTGTGTGTAGTACATAAATGCAAATAATGCGTCTCTTTTCTCTCATCA 60
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 TAGCCTTTCGATCGGTAGAAGCTAGAATGCCAGAGATGGTGAGGGCGTCAACAGCCATCT 120
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 CTGCGGGAAGAGTCGTCGTCGTCGCCGGAGCGGCGGCGTTGGTGGTTGTCTTGCTGTGCG 180
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 CGGCGCCGGCGCCGGCGGCCGTGGAAGCTGTCCCGGCCGGCGCCGAGGTCTCCGAGTTCC 240
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 CGGGGTTCGACGGCGACCTCCCCTCCAAGCACTACGCTGGGTACATAACTGTTGGACATC 300
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 AGCCGCTAAAGAGACATATGTATTACTATTTTGCCACTTCCGAAAGGAACTCAACCACTG 360
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 ACCCTGTCATCATCTGGATAAATGGTGGCCCAGCATGTTCAGGATCTAGTGCCTTTTTGC 420
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 ATTCAATCGGACCATTGAAAATAGAGGGACCCATGATTCATGCCAGAGATGAGCCAAGGA 480
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 CCAAGTTAAATCCTTTCTCATGGACCAAGATGTCTAGTGTCCTTTTGGTTGACTCACCAG 540
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 CAGGAGTGGGCTATTCTTATTCTGAAAATGAAGATGACTATGTAACAAATGATACAAGCA 600
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 GAGTATTGGACCTGTATGATTTTTTATCGAAGTGGTTTTCTGAATATCTTGAGTTTCTAT 660
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 CAAATCCTTTCTACATTGCCGGTTGCTCCTATAGTGGCGTGATAGTACCAGTTCTTGCAC 720
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 AAGAAATTCTGAAGCGAAATGAAGACAATGGCAGAATAAAGATAAATTTTAAGGGTTATT 780
consensus_2871#1 ------------------------------------------------------------
consensus_2871#0 CACTGTGTAATCCAGCTGTTGATGTAGAAATTGAAAATAACGCGTTTGTACCTTATGCAT 840
consensus_2871#1 ------------------CCAAAGAAGCCAATGAGGAATATGATTTTG---GTCAGATGT 39
* * ** * *** * * * **** * * *
consensus_2871#0 TTCGAATGGGATTGATTTCAGATGAATTATATCAGAATTTAGTTAGTACGTGCAATGGGA 900
consensus_2871#1 TT------GAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAG--AATGCA-ATATTGAAA 90
** * * **** ** * * * ***** * * * * ** *
consensus_2871#0 -AGTACTGGAATAACAAAGGCCCATCTTGTCTAGCAAACTTGGAACAGTTTCATAAGAAG 959
consensus_2871#1 TATTACAAAAGTGGAAGAGATGCCCCAACTTTATCCAATACACAAGAG-------ATATT 143
* *** * * * ** * * * ** * ** ** ** * *
consensus_2871#0 CCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATG 1019
consensus_2871#1 CCAACTTT-AACAGAGTATCACTTAAATGTAACA-------TCCAAAGGTTAC-AGAGTG 194
**** ** * * * * * **** * *** ** * * * ** **
consensus_2871#0 GTTTAGAATGCAATTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGG 1079
consensus_2871#1 TTTTTATAT---AGTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGG 251
*** ** * **********************************************
consensus_2871#0 CTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAA 1139
consensus_2871#1 CTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAA 311
************************************************************
consensus_2871#0 ATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCT 1199
consensus_2871#1 ATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCT 371
************************************************************
consensus_2871#0 GGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATA 1259
consensus_2871#1 GGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATA 431
************************************************************
consensus_2871#0 GATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATC 1319
consensus_2871#1 GATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATC 491
************************************************************
consensus_2871#0 TTAACTCAGTACCAATATACAATGGTGATATAACC-TCTG-------------------- 1358
consensus_2871#1 TTAACTCAGTACCAATATACAATGGTGATATAACCCTCTGTTTTGAGGCCAATGTGAAAC 551
*********************************** ****
consensus_2871#0 ----------------------------------------
consensus_2871#1 AGTTTCAGGCAATAGATGTGCATGATACATGACTAGTTCT 591
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||