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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1982 fasta sequence
[TCCAATCCTACGGTGCAAGTCTGGCCGATCTCACCGCGCGCGCGCCGCCTCCTCCCCCTTGAGTCGGCGCCGCCTCCAATCCGACGCCGGCTTCCCCCTCCGTCCGCCGCCACCTTCTTCCCCGTTCCGCTCCCCCGGGGAAACTTCGCCCTCTTCACCCTCCCCCAACTACTCCTGCCTCCACCCCCAAGGCCCCAACCACCGAACCCTAGCTGGCCGGCGCCGTCGTCACCGCCCCCGGGAGATCGTCGGAGCCCGGAGACGAGGAAGAAGCTGTCTGCCGCGCGGTCGTACTCGTATCGTGAAGCATACATATCGTCAGAGTTACCAATGGCTACAGAAAAGAAAGTGAACAAGCTATCTGTGGCTAATTTAACTTCGGATGATTCATTCTATCCAGTTATAGTTCCTGGAAACTCTAAGATTGAGATACAAAGCCGAGTCAGAAACTTGACTGTTTATGCTATCAAAATTCCTGGCAGCGTGGCATATAATGCTATGTTGTTATATTCAGAGGGTCAACAAGAGAAATGTCTAGCAGTACGACGAAGATCAGAACACGCCCATACTCTTTATGAAATCCTTCGAAATTGCTCTCACAGAAACATCATACAGCCTATGGGAGTCTGGGAAGAAATGGAGACGAACCTGGCATTTATTGTTTTCCCTTGCTCTGATGGAGTTGTGACTTCAATTCCAAAAGAAGCTTTATTTGATGTGGAAGATGCTACAAATGCTGAATCTTATACATTTGGTTTCAGTGACCAAGGTTGCAGGATCTTTAGAGAGATTTGTATGGCAGTCAGATATATCAATGTGCTGTATGACGAGGAGAAAATTCCATTGAAGGCACTGGATTTGGATGAAAGTAAAATCTTTTATCAGTCGAAGGCTAAGGGGGATTATCATGTCCTATTAACTGACATCAAGATGGAAATTTCACCAACGGGCAATGTGAGAAAGAACCGGAGAGCCAAGGGCAAAGTTTCTAGCACAGGAGTACCAACTGTTGATGACGTTAAAACTGCGAACTGGAATGGTTTGGGACAATTTCTTAAAAAGCTCCATAAAGACCTCAAGCTGCACATAGAATTGAGCCATCTTTCAGAAGAGCTCGGGAAAGAATCAGTAAAGTATGAAGATTTGGTGTGGGAACCTGGATTGTGGGAATCAAGCACTAAAGTGCAATTGGTTAGAGATGTTTATTGGTGCTACAACAAAAACAAGAACAGAATATCTACACTTAAGAACAAAACAGCCCTTGGACTCAAAAGCTTTATTGACAAGTTGGAGGTGAACAAGTCTAGAGCACCAGACAAACAAATCAATGACGACAACTTGTATGAGTCTCTGTTTTTTCTTAGAGTTTACATGGTTGCCCACAAAGACGATACTATTAAAGGTTACAGTGGCACAATGGAAATGATGCATGACAAGAAAGCCATTGTAAGGTTGCTTATGATAGAACGCCCTGAATACATGGTGACACTCATTTCAGCAATACGGAAGTTAGGCTGGATTAGGCAATCTCCATTTTGCGCATGGATAACCAGTACATGATAGAGTTTTACACCCCAAATCCTGCAAAGTGCTTGCTATCTCTTAGGAGGATTGGGATCCCATGCAGTTTGAACAGGGACTGCAAGTTTAGCAGTCTTAGGTATTCACTACCATCAGATCAAAGGTTTCAATGGCCCGGATTTAGTAGCAGTACTGTTTGTTAGCACTTGCTACAGTATGTGCTACAGGATTCATCTGCTACAGTACCTGATGAACAGTATTTTTGTGTGATCTGAGTCCTTGTTATTTGATCCAACAATGATTGTATGACTTGCTGAGGAAAAAAAATTGGTAGATGGCAAAGTTTCAACATGCATCTTGCAGTAGCTACATGGAGGTTGTACTTCTTAGTTACTCCCTCCGTTTCATAATGTAATACTGTCCACATTCATATAGATGTTAATAAATATAAACACATATAT]
[+] EMBL AK070622 [TCCAATCCTACGGTGCAAGTCTGGCCGATCTCACCGCGCGCGCGCCGCCTCCTCCCCCTTGAGTCGGCGCCGCCTCCAATCCGACGCCGGCTTCCCCCTCCGTCCGCCGCCACCTTCTTCCCCGTTCCGCTCCCCCGGGGAAACTTCGCCCTCTTCACCCTCCCCCAACTACTCCTGCCTCCACCCCCAAGGCCCCAACCACCGAACCCTAGCTGGCCGGCGCCGTCGTCACCGCCCCCGGGAGATCGTCGGAGCCCGGAGACGAGGAAGAAGCTGTCTGCCGCGCGGTCGTACTCGTATCGTGAAGCATACATATCGTCAGAGTTACCAATGGCTACAGAAAAGAAAGTGAACAAGCTATCTGTGGCTAATTTAACTTCGGATGATTCATTCTATCCAGTTATAGTTCCTGGAAACTCTAAGATTGAGATACAAAGCCGAGTCAGAAACTTGACTGTTTATGCTATCAAAATTCCTGGCAGCGTGGCATATAATGCTATGTTGTTATATTCAGAGGGTCAACAAGAGAAATGTCTAGCAGTACGACGAAGATCAGAACACGCCCATACTCTTTATGAAATCCTTCGAAATTGCTCTCACAGAAACATCATACAGCCTATGGGAGTCTGGGAAGAAATGGAGACGAACCTGGCATTTATTGTTTTCCCTTGCTCTGATGGAGTTGTGACTTCAATTCCAAAAGAAGCTTTATTTGATGTGGAAGATGCTACAAATGCTGAATCTTATACATTTGGTTTCAGTGACCAAGGTTGCAGGATCTTTAGAGAGATTTGTATGGCAGTCAGATATATCAATGTGCTGTATGACGAGGAGAAAATTCCATTGAAGGCACTGGATTTGGATGAAAGTAAAATCTTTTATCAGTCGAAGGCTAAGGGGGATTATCATGTCCTATTAACTGACATCAAGATGGAAATTTCACCAACGGGCAATGTGAGAAAGAACCGGAGAGCCAAGGGCAAAGTTTCTAGCACAGGAGTACCAACTGTTGATGACGTTAAAACTGCGAACTGGAATGGTTTGGGACAATTTCTTAAAAAGCTCCATAAAGACCTCAAGCTGCACATAGAATTGAGCCATCTTTCAGAAGAGCTCGGGAAAGAATCAGTAAAGTATGAAGATTTGGTGTGGGAACCTGGATTGTGGGAATCAAGCACTAAAGTGCAATTGGTTAGAGATGTTTATTGGTGCTACAACAAAAACAAGAACAGAATATCTACACTTAAGAACAAAACAGCCCTTGGACTCAAAAGCTTTATTGACAAGTTGGAGGTGAACAAGTCTAGAGCACCAGACAAACAAATCAATGACGACAACTTGTATGAGTCTCTGTTTTTTCTTAGAGTTTACATGGTTGCCCACAAAGACGATACTATTAAAGGTTACAGTGGCACAATGGAAATGATGCATGACAAGAAAGCCATTGTAAGGTTGCTTATGATAGAACGCCCTGAATACATGGTGACACTCATTTCAGCAATACGGAAGTTAGGCTGGATTAGGCAATCTCCATTTTGCGCATGGATAACCAGTACATGATAGAGTTTTACACCCCAAATCCTGCAAAGTGCTTGCTATCTCTTAGGAGGATTGGGATCCCATGCAGTTTGAACAGGGACTGCAAGTTTAGCAGTCTTAGGTATTCACTACCATCAGATCAAAGGTTTCAATGGCCCGGATTTAGTAGCAGTACTGTTTGTTAGCACTTGCTACAGTATGTGCTACAGGATTCATCTGCTACAGTACCTGATGAACAGTATTTTTGTGTGATCTGAGTCCTTGTTATTTGATCCAACAATGATTGTATGACTTGCTGAGGAAAAAAAATTGGTAGATGGCAAAGTTTCAACATGCATCTTGCAGTAGCTACATGGAGGTTGTACTTCTTAGTTACTCCCTCCGTTTCATAATGTAATACTGTCCACATTCATATAGATGTTAATAAATATAAACACATATAT]
consensusID : consensus_310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence
[CACTTGCCTGGATAAGCCATAACCCCGTAAGGCGTCGCTAGAATCCGGAATTGGGAATNCCCACGCAGTTTTGAACATGGACTGCAAAATTAGCAGTCTTAGGTCTTCAATACCATCGGATCGAAGATTTCAACGGCCATGATTTAGTACCAGTACTGTTTGTTATCACTTGCTACAGTACGCGCTACAGGATTCATCTGCTACAGTATCTGATGAACAGTACTTTTGTGTGATTTGAGCCCTTGATATTTGATCCAACAATGGTTGTATGACTGCGAAAGTTGCAGTCATANACAACTGCAGGTGATCTCAATTCCGCTAGATCCATTTGATCGATGNTCGGTGCACNTGGCCCCCCTCCCAATCATCGATCCAGTCCCATACACACGGTCACGTACACACGAACGCA]
[-] EMBL AU031267 [CACTTGCCTGGATAAGCCATAACCCCGTAAGGCGTCGCTAGAATCCGGAATTGGGAATNCCCACGCAGTTTTGAACATGGACTGCAAAATTAGCAGTCTTAGGTCTTCAATACCATCGGATCGAAGATTTCAACGGCCATGATTTAGTACCAGTACTGTTTGTTATCACTTGCTACAGTACGCGCTACAGGATTCATCTGCTACAGTATCTGATGAACAGTACTTTTGTGTGATTTGAGCCCTTGATATTTGATCCAACAATGGTTGTATGACTGCGAAAGTTGCAGTCATANACAACTGCAGGTGATCTCAATTCCGCTAGATCCATTTGATCGATGNTCGGTGCACNTGGCCCCCCTCCCAATCATCGATCCAGTCCCATACACACGGTCACGTACACACGAACGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_310#0 TCCAATCCTACGGTGCAAGTCTGGCCGATCTCACCGCGCGCGCGCCGCCTCCTCCCCCTT 60
consensus_310#1 ------------------------------------------------------------
consensus_310#0 GAGTCGGCGCCGCCTCCAATCCGACGCCGGCTTCCCCCTCCGTCCGCCGCCACCTTCTTC 120
consensus_310#1 ------------------------------------------------------------
consensus_310#0 CCCGTTCCGCTCCCCCGGGGAAACTTCGCCCTCTTCACCCTCCCCCAACTACTCCTGCCT 180
consensus_310#1 ------------------------------------------------------------
consensus_310#0 CCACCCCCAAGGCCCCAACCACCGAACCCTAGCTGGCCGGCGCCGTCGTCACCGCCCCCG 240
consensus_310#1 ------------------------------------------------------------
consensus_310#0 GGAGATCGTCGGAGCCCGGAGACGAGGAAGAAGCTGTCTGCCGCGCGGTCGTACTCGTAT 300
consensus_310#1 ------------------------------------------------------------
consensus_310#0 CGTGAAGCATACATATCGTCAGAGTTACCAATGGCTACAGAAAAGAAAGTGAACAAGCTA 360
consensus_310#1 ------------------------------------------------------------
consensus_310#0 TCTGTGGCTAATTTAACTTCGGATGATTCATTCTATCCAGTTATAGTTCCTGGAAACTCT 420
consensus_310#1 ------------------------------------------------------------
consensus_310#0 AAGATTGAGATACAAAGCCGAGTCAGAAACTTGACTGTTTATGCTATCAAAATTCCTGGC 480
consensus_310#1 ------------------------------------------------------------
consensus_310#0 AGCGTGGCATATAATGCTATGTTGTTATATTCAGAGGGTCAACAAGAGAAATGTCTAGCA 540
consensus_310#1 ------------------------------------------------------------
consensus_310#0 GTACGACGAAGATCAGAACACGCCCATACTCTTTATGAAATCCTTCGAAATTGCTCTCAC 600
consensus_310#1 ------------------------------------------------------------
consensus_310#0 AGAAACATCATACAGCCTATGGGAGTCTGGGAAGAAATGGAGACGAACCTGGCATTTATT 660
consensus_310#1 ------------------------------------------------------------
consensus_310#0 GTTTTCCCTTGCTCTGATGGAGTTGTGACTTCAATTCCAAAAGAAGCTTTATTTGATGTG 720
consensus_310#1 ------------------------------------------------------------
consensus_310#0 GAAGATGCTACAAATGCTGAATCTTATACATTTGGTTTCAGTGACCAAGGTTGCAGGATC 780
consensus_310#1 ------------------------------------------------------------
consensus_310#0 TTTAGAGAGATTTGTATGGCAGTCAGATATATCAATGTGCTGTATGACGAGGAGAAAATT 840
consensus_310#1 ------------------------------------------------------------
consensus_310#0 CCATTGAAGGCACTGGATTTGGATGAAAGTAAAATCTTTTATCAGTCGAAGGCTAAGGGG 900
consensus_310#1 ------------------------------------------------------------
consensus_310#0 GATTATCATGTCCTATTAACTGACATCAAGATGGAAATTTCACCAACGGGCAATGTGAGA 960
consensus_310#1 ------------------------------------------------------------
consensus_310#0 AAGAACCGGAGAGCCAAGGGCAAAGTTTCTAGCACAGGAGTACCAACTGTTGATGACGTT 1020
consensus_310#1 ------------------------------------------------------------
consensus_310#0 AAAACTGCGAACTGGAATGGTTTGGGACAATTTCTTAAAAAGCTCCATAAAGACCTCAAG 1080
consensus_310#1 ------------------------------------------------------------
consensus_310#0 CTGCACATAGAATTGAGCCATCTTTCAGAAGAGCTCGGGAAAGAATCAGTAAAGTATGAA 1140
consensus_310#1 ------------------------------------------------------------
consensus_310#0 GATTTGGTGTGGGAACCTGGATTGTGGGAATCAAGCACTAAAGTGCAATTGGTTAGAGAT 1200
consensus_310#1 ------------------------------------------------------------
consensus_310#0 GTTTATTGGTGCTACAACAAAAACAAGAACAGAATATCTACACTTAAGAACAAAACAGCC 1260
consensus_310#1 ------------------------------------------------------------
consensus_310#0 CTTGGACTCAAAAGCTTTATTGACAAGTTGGAGGTGAACAAGTCTAGAGCACCAGACAAA 1320
consensus_310#1 ------------------------------------------------------------
consensus_310#0 CAAATCAATGACGACAACTTGTATGAGTCTCTGTTTTTTCTTAGAGTTTACATGGTTGCC 1380
consensus_310#1 ------------------------------------------------------------
consensus_310#0 CACAAAGACGATACTATTAAAGGTTACAGTGGCACAATGGAAATGATGCATGACAAGAAA 1440
consensus_310#1 ------------------------------------------------------------
consensus_310#0 GCCATTGTAAGGTTGCTTATGATAGAACGCCCTGAATACATGGTGACACTCATTTCAGCA 1500
consensus_310#1 ------------------------------------------------------------
consensus_310#0 ATACGGAAGTTAGGCTGGATTAGGCAATCTCCATTTTGCGCATGGATAACCAGTACATGA 1560
consensus_310#1 -----------------------------------------------------CACTTGC 7
** **
consensus_310#0 TAGAGTTTTACACCCCAAATCCTGCAAAGTGCTTGCTATCTCTTAGGAGGATTGGGA--T 1618
consensus_310#1 CTGGATA----AGCCATAACCCCGTAAGGCG-TCGCTAGAATCCGGA---ATTGGGAATN 59
* * * ** ** ** * ** * * * **** * *******
consensus_310#0 CCCATGCAGTTT-GAACAGGGACTGCAAGTTTAGCAGTCTTAGGTATTCACTACCATCAG 1677
consensus_310#1 CCCACGCAGTTTTGAACATGGACTGCAAAATTAGCAGTCTTAGGTCTTCAATACCATCGG 119
**** ******* ***** ********* *************** **** ******* *
consensus_310#0 ATCAAAGGTTTCAATGGCCCGGATTTAGTAGCAGTACTGTTTGTTAGCACTTGCTACAGT 1737
consensus_310#1 ATCGAAGATTTCAACGGCCATGATTTAGTACCAGTACTGTTTGTTATCACTTGCTACAGT 179
*** *** ****** **** ********* *************** *************
consensus_310#0 ATGTGCTACAGGATTCATCTGCTACAGTACCTGATGAACAGTATTTTTGTGTGATCTGAG 1797
consensus_310#1 ACGCGCTACAGGATTCATCTGCTACAGTATCTGATGAACAGTACTTTTGTGTGATTTGAG 239
* * ************************* ************* *********** ****
consensus_310#0 TCCTTGTTATTTGATCCAACAATGATTGTATGACTTGCTGAGGAAAAAAAATTGGTAGAT 1857
consensus_310#1 CCCTTGATATTTGATCCAACAATGGTTGTATGA----CTGCGAAAGTTGCAGTCATANAC 295
***** ***************** ******** *** * ** * * ** *
consensus_310#0 GGCAAAGTTTCAACATGCATCTTGCAGTAGCTACATGGAGGTTGTACTTCTTAGTTACTC 1917
consensus_310#1 AACTGCAGGT-GATCTCAATTCCGCTAGATCCATTTGATCGATGNTCGGTGCACNTGG-C 353
* * * * ** ** * * * ** * ** * * * *
consensus_310#0 CCTCCGTTTCATAATGTAATACTGTCCACATTCATATAGATGTTAATAAATATAAACACA 1977
consensus_310#1 CCCCCTCCCAATCAT-CGATCCAGTCC-CATACACACGGTCAC--GTACACACGAACGCA 409
** ** ** ** ** * **** *** ** * * ** * * *** **
consensus_310#0 TATAT 1982
consensus_310#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||