cluster # 314

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 314 cluster # 314 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_314#0 length = 605 sequences # 1

consensus_314#1 length = 603 sequences # 1

consensusID : consensus_314#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [AGTAGAAATAATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTTGAATCAATATGGAAATAATTATGGTTATCCAGCCACTGGAGGACTTGGAGCTTATGGTGCTCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTGACACAATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGTAGCTGCTCCATTGCCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGGAGGTTTAGGAGGTGNNNTNCNTCTTGTCTTGCGCTCGGTGGCGGGCGTGCTGCCGCCTCGTGGTGGGCGGTCCCCGTGGGGGCATGTCGGCCCTCTCCACCGTCGTCCGCTCGTTCGTTGTGGGGCTGTCGTACGGGTCCGTACGGCCCCCGTCCCCCGGCGGAGGGGCACGGCGCGTAGATCGGTAGACGCAGCGGCGGCCGTCGGGATCGTGGCGGTAAGGAGGCGGGGCCCTCTAGCGCGCGGGGCGTAGGCTTACGACCCCGCAAGTGCGCGCCATGGCCAGGTAGGAGTC]

[+] EMBL CA756381             [AGTAGAAATAATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTTGAATCAATATGGAAATAATTATGGTTATCCAGCCACTGGAGGACTTGGAGCTTATGGTGCTCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTGACACAATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGTAGCTGCTCCATTGCCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGGAGGTTTAGGAGGTGNNNTNCNTCTTGTCTTGCGCTCGGTGGCGGGCGTGCTGCCGCCTCGTGGTGGGCGGTCCCCGTGGGGGCATGTCGGCCCTCTCCACCGTCGTCCGCTCGTTCGTTGTGGGGCTGTCGTACGGGTCCGTACGGCCCCCGTCCCCCGGCGGAGGGGCACGGCGCGTAGATCGGTAGACGCAGCGGCGGCCGTCGGGATCGTGGCGGTAAGGAGGCGGGGCCCTCTAGCGCGCGGGGCGTAGGCTTACGACCCCGCAAGTGCGCGCCATGGCCAGGTAGGAGTC]




>consensus_314#0
AGTAGAAATAATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAG
ATCCTTATTTGAATCAATATGGAAATAATTATGGTTATCCAGCCACTGGAGGACTTGGAG
CTTATGGTGCTCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGG
CAGTGACACAATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAG
TTATTTATGTAGCTGCTCCATTGCCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAG
GAGGTTTAGGAGGTTTAGGAGGTGNNNTNCNTCTTGTCTTGCGCTCGGTGGCGGGCGTGC
TGCCGCCTCGTGGTGGGCGGTCCCCGTGGGGGCATGTCGGCCCTCTCCACCGTCGTCCGC
TCGTTCGTTGTGGGGCTGTCGTACGGGTCCGTACGGCCCCCGTCCCCCGGCGGAGGGGCA
CGGCGCGTAGATCGGTAGACGCAGCGGCGGCCGTCGGGATCGTGGCGGTAAGGAGGCGGG
GCCCTCTAGCGCGCGGGGCGTAGGCTTACGACCCCGCAAGTGCGCGCCATGGCCAGGTAG
GAGTC

consensusID : consensus_314#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [AAATCAGTTATACACAGATCAACGACCACAACTAGTTTTAAAAAACTACATAAAGAAATAATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTTGAATCAATATGGAGGTGGTTATGGTTATCCAGCCACTGGAGGACTTGGATCTTATGGTGGTCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTAACACAATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGTAGCTGCTCCATTACCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGGAGGTGGCTTTCCAGCTACAGGTTTCGGTGGTGGCTTTCCAGCCACTGGTTTCGGTGGTGGTTTCCCAGCTACCGGTTTCGGGGGGGGTTTCCCAGCTACTGGTTTCGGAGGTGGTTTCCCAGCTACCGATTTAGGCGGTGGCTTCCCAGCTACCGGCTTCGGTGGTGTGTTAGGAGGGGGTGTCCAGCTCGGGGTTGAGGGGATTAAGGGGGGGGCTATGGGGCCGATCTGGGATATTAAGAC]

[+] EMBL CA755627             [AAATCAGTTATACACAGATCAACGACCACAACTAGTTTTAAAAAACTACATAAAGAAATAATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTTGAATCAATATGGAGGTGGTTATGGTTATCCAGCCACTGGAGGACTTGGATCTTATGGTGGTCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTAACACAATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGTAGCTGCTCCATTACCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGGAGGTGGCTTTCCAGCTACAGGTTTCGGTGGTGGCTTTCCAGCCACTGGTTTCGGTGGTGGTTTCCCAGCTACCGGTTTCGGGGGGGGTTTCCCAGCTACTGGTTTCGGAGGTGGTTTCCCAGCTACCGATTTAGGCGGTGGCTTCCCAGCTACCGGCTTCGGTGGTGTGTTAGGAGGGGGTGTCCAGCTCGGGGTTGAGGGGATTAAGGGGGGGGCTATGGGGCCGATCTGGGATATTAAGAC]




>consensus_314#1
AAATCAGTTATACACAGATCAACGACCACAACTAGTTTTAAAAAACTACATAAAGAAATA
ATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTT
GAATCAATATGGAGGTGGTTATGGTTATCCAGCCACTGGAGGACTTGGATCTTATGGTGG
TCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTAACACA
ATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGT
AGCTGCTCCATTACCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGG
AGGTGGCTTTCCAGCTACAGGTTTCGGTGGTGGCTTTCCAGCCACTGGTTTCGGTGGTGG
TTTCCCAGCTACCGGTTTCGGGGGGGGTTTCCCAGCTACTGGTTTCGGAGGTGGTTTCCC
AGCTACCGATTTAGGCGGTGGCTTCCCAGCTACCGGCTTCGGTGGTGTGTTAGGAGGGGG
TGTCCAGCTCGGGGTTGAGGGGATTAAGGGGGGGGCTATGGGGCCGATCTGGGATATTAA
GAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_314#0      --------------------------------------------------AGTAGAAATA 10
consensus_314#1      AAATCAGTTATACACAGATCAACGACCACAACTAGTTTTAAAAAACTACATAAAGAAATA 60
                                                                          *******

consensus_314#0      ATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTT 70
consensus_314#1      ATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTT 120
                     ************************************************************

consensus_314#0      GAATCAATATGGAAATAATTATGGTTATCCAGCCACTGGAGGACTTGGAGCTTATGGTGC 130
consensus_314#1      GAATCAATATGGAGGTGGTTATGGTTATCCAGCCACTGGAGGACTTGGATCTTATGGTGG 180
                     *************  *  ******************************* ********* 

consensus_314#0      TCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTGACACA 190
consensus_314#1      TCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTAACACA 240
                     ****************************************************** *****

consensus_314#0      ATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGT 250
consensus_314#1      ATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGT 300
                     ************************************************************

consensus_314#0      AGCTGCTCCATTGCCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGG 310
consensus_314#1      AGCTGCTCCATTACCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGG 360
                     ************ ***********************************************

consensus_314#0      AGGTTTAGGAGGTGNNNTNCNTCTTGTCTTGCGCTCGGTGGCGGGCGTGCTGCCGCCTCG 370
consensus_314#1      AGGT-----GGCTTTCCAGCTACAGGTTTCGG---TGGTGGCTTTCCAGCCACTGGTTT- 411
                     ****      * *      *  *  ** * *     ******   *  **  * *  *  

consensus_314#0      TGGTGGGCGGTCCCCGTGGGGGCATGTCGGCCCTCTCCACCGTCGTCCGCTCGTTCGTTG 430
consensus_314#1      CGGTGGTGGTTTCCCAGCTACCGGTTTCGGGGGGGGTTTCC--CAGCTACTGGTTTCGGA 469
                      *****  * * ***         * ****         **  *  *  ** ***     

consensus_314#0      TGGGGCTGTCGTACGGGTCCGTACGGCCCCCGTCCCCCGGCGGAGGGGCACGGCGCGTAG 490
consensus_314#1      GGTGGTTTCCCAGCTACCGATTTAGGCGGTGGCTTCCCAGCTACCGGCTTCGGTG-GTGT 528
                      * ** *  *   *       *  ***    *   *** **    **   *** * **  

consensus_314#0      ATCGGTAGACGCAGCGGCGGCCGTCGGGATCGTGGCGGTAAGGAGGCGGGGCCCTCTAGC 550
consensus_314#1      GTTAG--GAGGGGGTGTCCAGC-TCGGGGTTGAGGGGATTAAGGGGGGGG---CTATGGG 582
                      *  *  ** *  * * *   * ***** * * ** * * * * ** ***   ** * * 

consensus_314#0      GCGCGGGGCGTAGGCTTACGACCCCGCAAGTGCGCGCCATGGCCAGGTAGGAGTC 605
consensus_314#1      GC-CGATCTGGGATATTAAGAC--------------------------------- 603
                     ** **    *     *** ***