cluster # 3204

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Oryza sativa
cluster # 3204 cluster # 3204 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3204#0 length = 705 sequences # 1

consensus_3204#1 length = 467 sequences # 1

consensusID : consensus_3204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [GACGACGCCCCCTTCACCGCGTGCTTGCCAGCGAGGGCTTGATGGCGGTGGCCACCGACGACGATGAAGATGTTGAAGAGATGCAGGGCTACCGGATCGGAAGGATTGGTAGCGCCTCATGCAAGGAAGACAGACTAGACCAGATGGGATCTGCAGCTGGAACACGTAGGTTGTGCACTTCTGCAAACAATGCTGCAGTGTCCCTTCCTCCGGGGTGGGGAAGGTCACGATCGATCGCGTTCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGACCGGCACGGGCCGCGCCTCTCAGGTCTTCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTCGGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATATGGTGTCGCAAGTCGCAACTGTGTGCAGCGGCTCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTGAACTTCGCGCCGTTGTCGATACCTCCTGCCTGGCTGCCTCATAGCAGTGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAATAGCTGCCGTTTAGTTTTTTTATGCACTATATGGATGGACCAACAGCTGCCCTGTAAATTTTTTACTACTAGTAGCACATTTATGTTGTGATAAAAAATTACTGTACCTTTTTTTTACTATATACCAGCAGCGATCTCG]

[+] EMBL AK063250             [GACGACGCCCCCTTCACCGCGTGCTTGCCAGCGAGGGCTTGATGGCGGTGGCCACCGACGACGATGAAGATGTTGAAGAGATGCAGGGCTACCGGATCGGAAGGATTGGTAGCGCCTCATGCAAGGAAGACAGACTAGACCAGATGGGATCTGCAGCTGGAACACGTAGGTTGTGCACTTCTGCAAACAATGCTGCAGTGTCCCTTCCTCCGGGGTGGGGAAGGTCACGATCGATCGCGTTCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGACCGGCACGGGCCGCGCCTCTCAGGTCTTCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTCGGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATATGGTGTCGCAAGTCGCAACTGTGTGCAGCGGCTCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTGAACTTCGCGCCGTTGTCGATACCTCCTGCCTGGCTGCCTCATAGCAGTGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAATAGCTGCCGTTTAGTTTTTTTATGCACTATATGGATGGACCAACAGCTGCCCTGTAAATTTTTTACTACTAGTAGCACATTTATGTTGTGATAAAAAATTACTGTACCTTTTTTTTACTATATACCAGCAGCGATCTCG]




>consensus_3204#0
GACGACGCCCCCTTCACCGCGTGCTTGCCAGCGAGGGCTTGATGGCGGTGGCCACCGACG
ACGATGAAGATGTTGAAGAGATGCAGGGCTACCGGATCGGAAGGATTGGTAGCGCCTCAT
GCAAGGAAGACAGACTAGACCAGATGGGATCTGCAGCTGGAACACGTAGGTTGTGCACTT
CTGCAAACAATGCTGCAGTGTCCCTTCCTCCGGGGTGGGGAAGGTCACGATCGATCGCGT
TCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGACCGGCACGGGCCGCGCCTCTCAGG
TCTTCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTC
GGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATATGGTGTCGCAAGT
CGCAACTGTGTGCAGCGGCTCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTG
AACTTCGCGCCGTTGTCGATACCTCCTGCCTGGCTGCCTCATAGCAGTGACAAGCAAGAC
ATCGGCAGGAGTCAAAATGCTAGCAATAGCTGCCGTTTAGTTTTTTTATGCACTATATGG
ATGGACCAACAGCTGCCCTGTAAATTTTTTACTACTAGTAGCACATTTATGTTGTGATAA
AAAATTACTGTACCTTTTTTTTACTATATACCAGCAGCGATCTCG

consensusID : consensus_3204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [TCCTCCGGGGTGGGGAAGGTCACGATCGTCCGCGCTCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGAGCCTCTCAGGTCGCCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTCGGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATGGTGTCGCAAGTCGCAACTGCGTGCAGTGGCCCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTGAACTTCGCGCCGTCGTCGATACCTCCTGCCAGGCTGCCTCATGGCAGCGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAGTAGCTGCCGTTTAGTTTTTTTTATGCATTATATAGATGGACCTACAGCTGCCCTGTAAATTTGTTACTACTAGTAGCACATTTATGTTGTCATAAAAATTTACTGTACCTTTTTTTTAAAAA]

[-] EMBL CF317795             [TCCTCCGGGGTGGGGAAGGTCACGATCGTCCGCGCTCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGAGCCTCTCAGGTCGCCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTCGGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATGGTGTCGCAAGTCGCAACTGCGTGCAGTGGCCCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTGAACTTCGCGCCGTCGTCGATACCTCCTGCCAGGCTGCCTCATGGCAGCGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAGTAGCTGCCGTTTAGTTTTTTTTATGCATTATATAGATGGACCTACAGCTGCCCTGTAAATTTGTTACTACTAGTAGCACATTTATGTTGTCATAAAAATTTACTGTACCTTTTTTTTAAAAA]




>consensus_3204#1
TCCTCCGGGGTGGGGAAGGTCACGATCGTCCGCGCTCGGCGGGCGGCAGCGACGGACTGC
AGGCCCGGCGAGCCTCTCAGGTCGCCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCA
GCATCCCCTTCGTCCATGTTCGGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATG
GAGTCATGGTGTCGCAAGTCGCAACTGCGTGCAGTGGCCCATCGCCGTCGACCTTGAGAC
TAACATTTGGCCTTCACTGAACTTCGCGCCGTCGTCGATACCTCCTGCCAGGCTGCCTCA
TGGCAGCGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAGTAGCTGCCGTTTAGT
TTTTTTTATGCATTATATAGATGGACCTACAGCTGCCCTGTAAATTTGTTACTACTAGTA
GCACATTTATGTTGTCATAAAAATTTACTGTACCTTTTTTTTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3204#0      GACGACGCCCCCTTCACCGCGTGCTTGCCAGCGAGGGCTTGATGGCGGTGGCCACCGACG 60
consensus_3204#1      ------------------------------------------------------------
                                                                                  

consensus_3204#0      ACGATGAAGATGTTGAAGAGATGCAGGGCTACCGGATCGGAAGGATTGGTAGCGCCTCAT 120
consensus_3204#1      ------------------------------------------------------------
                                                                                  

consensus_3204#0      GCAAGGAAGACAGACTAGACCAGATGGGATCTGCAGCTGGAACACGTAGGTTGTGCACTT 180
consensus_3204#1      ------------------------------------------------------------
                                                                                  

consensus_3204#0      CTGCAAACAATGCTGCAGTGTCCCTTCCTCCGGGGTGGGGAAGGTCACGATCGATCGCGT 240
consensus_3204#1      -------------------------TCCTCCGGGGTGGGGAAGGTCACGATCGTCCGCGC 35
                                               ****************************  **** 

consensus_3204#0      TCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGACCGGCACGGGCCGCGCCTCTCAGG 300
consensus_3204#1      TCGGCGGGCGGCAGCGACGGACTGCAGGCCCGGCGA--------------GCCTCTCAGG 81
                      ************************************              **********

consensus_3204#0      TCTTCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTC 360
consensus_3204#1      TCGCCGTTGATGGGGATGGAGGCCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTC 141
                      **  ********************************************************

consensus_3204#0      GGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATATGGTGTCGCAAGT 420
consensus_3204#1      GGCCGGCCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCA--TGGTGTCGCAAGT 199
                      *********************************************  *************

consensus_3204#0      CGCAACTGTGTGCAGCGGCTCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTG 480
consensus_3204#1      CGCAACTGCGTGCAGTGGCCCATCGCCGTCGACCTTGAGACTAACATTTGGCCTTCACTG 259
                      ******** ****** *** ****************************************

consensus_3204#0      AACTTCGCGCCGTTGTCGATACCTCCTGCCTGGCTGCCTCATAGCAGTGACAAGCAAGAC 540
consensus_3204#1      AACTTCGCGCCGTCGTCGATACCTCCTGCCAGGCTGCCTCATGGCAGCGACAAGCAAGAC 319
                      ************* **************** *********** **** ************

consensus_3204#0      ATCGGCAGGAGTCAAAATGCTAGCAATAGCTGCCGTTTAGTTTTTTT-ATGCACTATATG 599
consensus_3204#1      ATCGGCAGGAGTCAAAATGCTAGCAGTAGCTGCCGTTTAGTTTTTTTTATGCATTATATA 379
                      ************************* ********************* ***** ***** 

consensus_3204#0      GATGGACCAACAGCTGCCCTGTAAATTTTTTACTACTAGTAGCACATTTATGTTGTGATA 659
consensus_3204#1      GATGGACCTACAGCTGCCCTGTAAATTTGTTACTACTAGTAGCACATTTATGTTGTCATA 439
                      ******** ******************* *************************** ***

consensus_3204#0      AAAAATTACTGTACCTTTTTTTTACTATATACCAGCAGCGATCTCG 705
consensus_3204#1      AAAATTTACTGTACCTTTTTTTTAAAAA------------------ 467
                      **** *******************  *