cluster # 3215

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Oryza sativa
cluster # 3215 cluster # 3215 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3215#0 length = 284 sequences # 1

consensus_3215#1 length = 266 sequences # 1

consensusID : consensus_3215#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [GCGTCCATGGCGTTCACCGTCCTCGNGCTCNCNGTCGTCGCCGTCTCCGGTGCGGCGNCGGCGTGGACCACCACCTTNACCATGCACAACCTCTGCCCCTACACGGTCTGGCCGCTCGTAACCCCCAACGCCGGTNAGCCCGCNATCATCACCGGCGGCGCCACCATCCGCNTCGACCCCAACGGCCTCGCCAGCNTCGCTTTNCCGGCCGCCGCGGTNGGTCGGGCCGCNTNGTGCCGNGNACCGGCTGCACCGGNGCGGCACGTGCGNNACCGGAACGCGNC]

[+] EMBL AU069799             [GCGTCCATGGCGTTCACCGTCCTCGNGCTCNCNGTCGTCGCCGTCTCCGGTGCGGCGNCGGCGTGGACCACCACCTTNACCATGCACAACCTCTGCCCCTACACGGTCTGGCCGCTCGTAACCCCCAACGCCGGTNAGCCCGCNATCATCACCGGCGGCGCCACCATCCGCNTCGACCCCAACGGCCTCGCCAGCNTCGCTTTNCCGGCCGCCGCGGTNGGTCGGGCCGCNTNGTGCCGNGNACCGGCTGCACCGGNGCGGCACGTGCGNNACCGGAACGCGNC]




>consensus_3215#0
GCGTCCATGGCGTTCACCGTCCTCGNGCTCNCNGTCGTCGCCGTCTCCGGTGCGGCGNCG
GCGTGGACCACCACCTTNACCATGCACAACCTCTGCCCCTACACGGTCTGGCCGCTCGTA
ACCCCCAACGCCGGTNAGCCCGCNATCATCACCGGCGGCGCCACCATCCGCNTCGACCCC
AACGGCCTCGCCAGCNTCGCTTTNCCGGCCGCCGCGGTNGGTCGGGCCGCNTNGTGCCGN
GNACCGGCTGCACCGGNGCGGCACGTGCGNNACCGGAACGCGNC

consensusID : consensus_3215#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [AAGGCGTCCATGGCGTTCACCGTCCTCGCGCTCGCCGTCGTCGCCGTCTCCGGTGCGGCGGCGGCGTCGACCACCACCTTCACCATGCACAACCTCTGCCCCTACACGGTCTGGCCGCTCGTCACCCCCAACGCCGGTCAGCCCGCCATCATCACCGGCGGCGCCACCATCCGCCTCGACNCCAACGGCCTCGCNAGCCTCGCGTTCCCGGCCGCCGCCGGGTGGTCGGGCCGCGTCGTGCCGCGCACCGGCTGCANCGGGGCGGN]

[+] EMBL AU095619             [AAGGCGTCCATGGCGTTCACCGTCCTCGCGCTCGCCGTCGTCGCCGTCTCCGGTGCGGCGGCGGCGTCGACCACCACCTTCACCATGCACAACCTCTGCCCCTACACGGTCTGGCCGCTCGTCACCCCCAACGCCGGTCAGCCCGCCATCATCACCGGCGGCGCCACCATCCGCCTCGACNCCAACGGCCTCGCNAGCCTCGCGTTCCCGGCCGCCGCCGGGTGGTCGGGCCGCGTCGTGCCGCGCACCGGCTGCANCGGGGCGGN]




>consensus_3215#1
AAGGCGTCCATGGCGTTCACCGTCCTCGCGCTCGCCGTCGTCGCCGTCTCCGGTGCGGCG
GCGGCGTCGACCACCACCTTCACCATGCACAACCTCTGCCCCTACACGGTCTGGCCGCTC
GTCACCCCCAACGCCGGTCAGCCCGCCATCATCACCGGCGGCGCCACCATCCGCCTCGAC
NCCAACGGCCTCGCNAGCCTCGCGTTCCCGGCCGCCGCCGGGTGGTCGGGCCGCGTCGTG
CCGCGCACCGGCTGCANCGGGGCGGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3215#0      ---GCGTCCATGGCGTTCACCGTCCTCGNGCTCNCNGTCGTCGCCGTCTCCGGTGCGGCG 57
consensus_3215#1      AAGGCGTCCATGGCGTTCACCGTCCTCGCGCTCGCCGTCGTCGCCGTCTCCGGTGCGGCG 60
                         ************************* **** * ************************

consensus_3215#0      NCGGCGTGGACCACCACCTTNACCATGCACAACCTCTGCCCCTACACGGTCTGGCCGCTC 117
consensus_3215#1      GCGGCGTCGACCACCACCTTCACCATGCACAACCTCTGCCCCTACACGGTCTGGCCGCTC 120
                       ****** ************ ***************************************

consensus_3215#0      GTAACCCCCAACGCCGGTNAGCCCGCNATCATCACCGGCGGCGCCACCATCCGCNTCGAC 177
consensus_3215#1      GTCACCCCCAACGCCGGTCAGCCCGCCATCATCACCGGCGGCGCCACCATCCGCCTCGAC 180
                      ** *************** ******* *************************** *****

consensus_3215#0      CCCAACGGCCTCGCCAGCNTCGCTTTNCCGGCCGCCGC-GGTNGGTCGGGCCGCNTNGTG 236
consensus_3215#1      NCCAACGGCCTCGCNAGCCTCGCGTTCCCGGCCGCCGCCGGGTGGTCGGGCCGCGTCGTG 240
                       ************* *** **** ** *********** **  *********** * ***

consensus_3215#0      CCGNGNACCGGCTGCACCGGNGCGGCACGTGCGNNACCGGAACGCGNC 284
consensus_3215#1      CCGCGCACCGGCTGCANCGGGGCGGN---------------------- 266
                      *** * ********** *** ****