cluster # 3217

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Oryza sativa
cluster # 3217 cluster # 3217 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3217#0 length = 794 sequences # 1

consensus_3217#1 length = 763 sequences # 1

consensusID : consensus_3217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 794
fasta sequence

                              [AGGTAGCTGACCATACTTCCAACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCAACGAGTAAGATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAAAGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATAGCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCAAGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAGAGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCTAATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCTTCATTTCATCCCACAGAACAACCAGTGCGTACCGATGCCGGGGCAATCCGCATAGAATCCTCGTTGAAGTGTACCGATGCTGGGGCAGCCATCACGGCTGATCAGGATCATTATCGTGGTATTGCCTGGAAAACGTTGTGCTGGAGTAGTTCTTTGCTGGCGAGGCTGCATTTTTCATTTTTTTTTAATGATGTGTGCTGTTTAGCCGCATAGTTGATATTGGAAAAGTGTTGTATAAATTTTGGGTTTGTAAACAAAAAAAAAAGGGCTTGGGGCTTTGNTTTGAAAGCATGTAATAAGCCAAGTAATGCAAATTATGGGAAGACTTGATTTTGGGAGCTTTGGGGCCACTAC]

[+] EMBL CB096509             [AGGTAGCTGACCATACTTCCAACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCAACGAGTAAGATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAAAGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATAGCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCAAGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAGAGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCTAATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCTTCATTTCATCCCACAGAACAACCAGTGCGTACCGATGCCGGGGCAATCCGCATAGAATCCTCGTTGAAGTGTACCGATGCTGGGGCAGCCATCACGGCTGATCAGGATCATTATCGTGGTATTGCCTGGAAAACGTTGTGCTGGAGTAGTTCTTTGCTGGCGAGGCTGCATTTTTCATTTTTTTTTAATGATGTGTGCTGTTTAGCCGCATAGTTGATATTGGAAAAGTGTTGTATAAATTTTGGGTTTGTAAACAAAAAAAAAAGGGCTTGGGGCTTTGNTTTGAAAGCATGTAATAAGCCAAGTAATGCAAATTATGGGAAGACTTGATTTTGGGAGCTTTGGGGCCACTAC]




>consensus_3217#0
AGGTAGCTGACCATACTTCCAACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGG
GAAAGTCACCAACGAGTAAGATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACT
CAAATAATACGAGGCCTGAAAGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCA
GCCGAATTTTGAGAGAAATAGCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATT
CTGATGTCCAAGATAGCCCAAGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAG
AATTGGTCCAGGAGCTTGAGAGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGC
CGTCCCCGAATAGAGGGCCTAATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGA
CAACAACAATCACTGTTTCTTCATTTCATCCCACAGAACAACCAGTGCGTACCGATGCCG
GGGCAATCCGCATAGAATCCTCGTTGAAGTGTACCGATGCTGGGGCAGCCATCACGGCTG
ATCAGGATCATTATCGTGGTATTGCCTGGAAAACGTTGTGCTGGAGTAGTTCTTTGCTGG
CGAGGCTGCATTTTTCATTTTTTTTTAATGATGTGTGCTGTTTAGCCGCATAGTTGATAT
TGGAAAAGTGTTGTATAAATTTTGGGTTTGTAAACAAAAAAAAAAGGGCTTGGGGCTTTG
NTTTGAAAGCATGTAATAAGCCAAGTAATGCAAATTATGGGAAGACTTGATTTTGGGAGC
TTTGGGGCCACTAC

consensusID : consensus_3217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 763
fasta sequence

                              [TTCTCATCAATNATGGAATTTGGTGGATNNGCTAAACATGCTGAAAGCAGCATGACCGAAAATGATTTTACTTTTCCTTGCGAAGGAAGTTGTGAAGATGATGATGTACTTACAGAATCGAAAATAAAAGCATTTCTTGACGAGAAGGCTCTTGATCTGAAGAAGCTACAAACACCTTTATATGAGGAGTTCTACAACACGGTGAATGCTGGGAATTCTCAGGTAGCTGACCATACTTCCAACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCGACGAGTAAGATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAAAGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATAGCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCAAGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAGAGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCTAATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCTTCATTTCATCCCACAGGAACAACCAGTGGTAAGTGGTAACTATACAATGCTTGCGATTGGTGTCAGCAGCAGTATATAGCATACACTGGCTGATCATTCGAGG]

[+] EMBL CA766100             [TTCTCATCAATNATGGAATTTGGTGGATNNGCTAAACATGCTGAAAGCAGCATGACCGAAAATGATTTTACTTTTCCTTGCGAAGGAAGTTGTGAAGATGATGATGTACTTACAGAATCGAAAATAAAAGCATTTCTTGACGAGAAGGCTCTTGATCTGAAGAAGCTACAAACACCTTTATATGAGGAGTTCTACAACACGGTGAATGCTGGGAATTCTCAGGTAGCTGACCATACTTCCAACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCGACGAGTAAGATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAAAGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATAGCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCAAGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAGAGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCTAATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCTTCATTTCATCCCACAGGAACAACCAGTGGTAAGTGGTAACTATACAATGCTTGCGATTGGTGTCAGCAGCAGTATATAGCATACACTGGCTGATCATTCGAGG]




>consensus_3217#1
TTCTCATCAATNATGGAATTTGGTGGATNNGCTAAACATGCTGAAAGCAGCATGACCGAA
AATGATTTTACTTTTCCTTGCGAAGGAAGTTGTGAAGATGATGATGTACTTACAGAATCG
AAAATAAAAGCATTTCTTGACGAGAAGGCTCTTGATCTGAAGAAGCTACAAACACCTTTA
TATGAGGAGTTCTACAACACGGTGAATGCTGGGAATTCTCAGGTAGCTGACCATACTTCC
AACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCGACGAGTAAG
ATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAA
AGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATA
GCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCA
AGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAG
AGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCT
AATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCT
TCATTTCATCCCACAGGAACAACCAGTGGTAAGTGGTAACTATACAATGCTTGCGATTGG
TGTCAGCAGCAGTATATAGCATACACTGGCTGATCATTCGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3217#0      ------------------------------------------------------------
consensus_3217#1      TTCTCATCAATNATGGAATTTGGTGGATNNGCTAAACATGCTGAAAGCAGCATGACCGAA 60
                                                                                  

consensus_3217#0      ------------------------------------------------------------
consensus_3217#1      AATGATTTTACTTTTCCTTGCGAAGGAAGTTGTGAAGATGATGATGTACTTACAGAATCG 120
                                                                                  

consensus_3217#0      ------------------------------------------------------------
consensus_3217#1      AAAATAAAAGCATTTCTTGACGAGAAGGCTCTTGATCTGAAGAAGCTACAAACACCTTTA 180
                                                                                  

consensus_3217#0      ----------------------------------------AGGTAGCTGACCATACTTCC 20
consensus_3217#1      TATGAGGAGTTCTACAACACGGTGAATGCTGGGAATTCTCAGGTAGCTGACCATACTTCC 240
                                                              ********************

consensus_3217#0      AACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCAACGAGTAAG 80
consensus_3217#1      AACGGAATTTTCTCAAATAGTCCCAAATTGCCACCTCGGGGAAAGTCACCGACGAGTAAG 300
                      ************************************************** *********

consensus_3217#0      ATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAA 140
consensus_3217#1      ATGAGAGGAGGTGCAGCAGCAGCATCAACTTGTGATAACTCAAATAATACGAGGCCTGAA 360
                      ************************************************************

consensus_3217#0      AGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATA 200
consensus_3217#1      AGCTGCAGCAACCAATTATCAGAAGACACTGTACAGAGCAGCCGAATTTTGAGAGAAATA 420
                      ************************************************************

consensus_3217#0      GCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCA 260
consensus_3217#1      GCTTCTCCGCAACTTGATGAGTTAGGAAACAAAATCCATTCTGATGTCCAAGATAGCCCA 480
                      ************************************************************

consensus_3217#0      AGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAG 320
consensus_3217#1      AGTGTGAGCTTCGCTGAAAGGCAGAGAAAGTGGAAAGAAGAATTGGTCCAGGAGCTTGAG 540
                      ************************************************************

consensus_3217#0      AGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCT 380
consensus_3217#1      AGGGAAAGAGTGATGAGATTAGCTAGCTGTGGCAAAACGCCGTCCCCGAATAGAGGGCCT 600
                      ************************************************************

consensus_3217#0      AATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCT 440
consensus_3217#1      AATGGGAAGCGAGAGCGACATCCTGCCCATTGAGAACAGACAACAACAATCACTGTTTCT 660
                      ************************************************************

consensus_3217#0      TCATTTCATCCCACAG-AACAACCAGTGCGTACCGATGCCGGGGCAATCCGCATAGAATC 499
consensus_3217#1      TCATTTCATCCCACAGGAACAACCAGTGGTAAGTGGTAACTATACAAT--GCTTGCGATT 718
                      **************** ***********   *  * *  *    ****  ** *   ** 

consensus_3217#0      CTCGTTGAAGTGTACCGATGCTGGGGCAGCCATCACGGCTGATCAGGATCATTATCGTGG 559
consensus_3217#1      GGTGTCA----GCAGCAGTA-TATAGCATACACT--GGCTGATCAT--TCGAGG------ 763
                         **      * * *  *  *   ***  **    *********   **          

consensus_3217#0      TATTGCCTGGAAAACGTTGTGCTGGAGTAGTTCTTTGCTGGCGAGGCTGCATTTTTCATT 619
consensus_3217#1      ------------------------------------------------------------
                                                                                  

consensus_3217#0      TTTTTTTAATGATGTGTGCTGTTTAGCCGCATAGTTGATATTGGAAAAGTGTTGTATAAA 679
consensus_3217#1      ------------------------------------------------------------
                                                                                  

consensus_3217#0      TTTTGGGTTTGTAAACAAAAAAAAAAGGGCTTGGGGCTTTGNTTTGAAAGCATGTAATAA 739
consensus_3217#1      ------------------------------------------------------------
                                                                                  

consensus_3217#0      GCCAAGTAATGCAAATTATGGGAAGACTTGATTTTGGGAGCTTTGGGGCCACTAC 794
consensus_3217#1      -------------------------------------------------------