cluster # 3256

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Oryza sativa
cluster # 3256 cluster # 3256 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3256#0 length = 441 sequences # 1

consensus_3256#1 length = 271 sequences # 1

consensusID : consensus_3256#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [AGCGACGGCGGCGATGAGCGTAAGGTTGGCGGGTCGCGTGGGCGGCGCTCGGNTGGCTCCATCGCCGGCGCCGGNCCGANGGGNAAAACGCNAGACGGAGGCGCCGCCACGACGTGGAACGCNAAGGATAGGGCGGCGGCTGCGGCGGGGGGCTCGCTGTCGTCNAGGCAGGCNATGAGGGCGGCGAATNCGGCGNAGGAGGAGGAGGATGATCGGAGGAGGAGGAGGAAGAGGGAGGAGGAGTCGCTGCGGGCTTTCATGTTCATCTCCTTCTGGGGCCCAAACTCCTNAGGCCACATCCATTTCCATGTCCATTTTCTTGGGCTTTTGCTTGTAATTTTTGGNTTTCTTTAATTTCTTTTCTTNCTGCCTTTCCTNGATCTCCATGGATCAAAGACGGTAATATTTTTTCCAACGGAAAAAGCATTTAATTTTAAAGGT]

[+] EMBL C27928               [AGCGACGGCGGCGATGAGCGTAAGGTTGGCGGGTCGCGTGGGCGGCGCTCGGNTGGCTCCATCGCCGGCGCCGGNCCGANGGGNAAAACGCNAGACGGAGGCGCCGCCACGACGTGGAACGCNAAGGATAGGGCGGCGGCTGCGGCGGGGGGCTCGCTGTCGTCNAGGCAGGCNATGAGGGCGGCGAATNCGGCGNAGGAGGAGGAGGATGATCGGAGGAGGAGGAGGAAGAGGGAGGAGGAGTCGCTGCGGGCTTTCATGTTCATCTCCTTCTGGGGCCCAAACTCCTNAGGCCACATCCATTTCCATGTCCATTTTCTTGGGCTTTTGCTTGTAATTTTTGGNTTTCTTTAATTTCTTTTCTTNCTGCCTTTCCTNGATCTCCATGGATCAAAGACGGTAATATTTTTTCCAACGGAAAAAGCATTTAATTTTAAAGGT]




>consensus_3256#0
AGCGACGGCGGCGATGAGCGTAAGGTTGGCGGGTCGCGTGGGCGGCGCTCGGNTGGCTCC
ATCGCCGGCGCCGGNCCGANGGGNAAAACGCNAGACGGAGGCGCCGCCACGACGTGGAAC
GCNAAGGATAGGGCGGCGGCTGCGGCGGGGGGCTCGCTGTCGTCNAGGCAGGCNATGAGG
GCGGCGAATNCGGCGNAGGAGGAGGAGGATGATCGGAGGAGGAGGAGGAAGAGGGAGGAG
GAGTCGCTGCGGGCTTTCATGTTCATCTCCTTCTGGGGCCCAAACTCCTNAGGCCACATC
CATTTCCATGTCCATTTTCTTGGGCTTTTGCTTGTAATTTTTGGNTTTCTTTAATTTCTT
TTCTTNCTGCCTTTCCTNGATCTCCATGGATCAAAGACGGTAATATTTTTTCCAACGGAA
AAAGCATTTAATTTTAAAGGT

consensusID : consensus_3256#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [AGGAGGAGGATTNTCGGAGGAGGAGGAGNAAAAGGGAGGAGGAGTCNCTGCGGGCGTTCATGTTCATCTCCTTCTGGGGCCCNAACTCCTGAGGCCACATCCATTTCCATGTCCATTTTCTTGGGCTTTGCTTGTGATTTTTGTTTTCTTGATTTCTTTCTTCCTGCCTTCCTCGATCTCCATGGATCAAANACGTGAATATTTTTGCCNACGGAAAAAGCATGTNATGTGAAGGTTTTTAGTTTTTTCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU166927             [AGGAGGAGGATTNTCGGAGGAGGAGGAGNAAAAGGGAGGAGGAGTCNCTGCGGGCGTTCATGTTCATCTCCTTCTGGGGCCCNAACTCCTGAGGCCACATCCATTTCCATGTCCATTTTCTTGGGCTTTGCTTGTGATTTTTGTTTTCTTGATTTCTTTCTTCCTGCCTTCCTCGATCTCCATGGATCAAANACGTGAATATTTTTGCCNACGGAAAAAGCATGTNATGTGAAGGTTTTTAGTTTTTTCAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3256#1
AGGAGGAGGATTNTCGGAGGAGGAGGAGNAAAAGGGAGGAGGAGTCNCTGCGGGCGTTCA
TGTTCATCTCCTTCTGGGGCCCNAACTCCTGAGGCCACATCCATTTCCATGTCCATTTTC
TTGGGCTTTGCTTGTGATTTTTGTTTTCTTGATTTCTTTCTTCCTGCCTTCCTCGATCTC
CATGGATCAAANACGTGAATATTTTTGCCNACGGAAAAAGCATGTNATGTGAAGGTTTTT
AGTTTTTTCAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3256#0      AGCGACGGCGGCGATGAGCGTAAGGTTGGCGGGTCGCGTGGGCGGCGCTCGGNTGGCTCC 60
consensus_3256#1      ------------------------------------------------------------
                                                                                  

consensus_3256#0      ATCGCCGGCGCCGGNCCGANGGGNAAAACGCNAGACGGAGGCGCCGCCACGACGTGGAAC 120
consensus_3256#1      ------------------------------------------------------------
                                                                                  

consensus_3256#0      GCNAAGGATAGGGCGGCGGCTGCGGCGGGGGGCTCGCTGTCGTCNAGGCAGGCNATGAGG 180
consensus_3256#1      ------------------------------------------------------------
                                                                                  

consensus_3256#0      GCGGCGAATNCGGCGNAGGAGGAGGAGGATGATCGGAGGAGGAGGAGGAAGAGGGAGGAG 240
consensus_3256#1      -------------------AGGAGGAGGATTNTCGGAGGAGGAGGAGNAAAAGGGAGGAG 41
                                         ***********  *************** ** *********

consensus_3256#0      GAGTCGCTGCGGGCTTTCATGTTCATCTCCTTCTGGGGCCCAAACTCCTNAGGCCACATC 300
consensus_3256#1      GAGTCNCTGCGGGCGTTCATGTTCATCTCCTTCTGGGGCCCNAACTCCTGAGGCCACATC 101
                      ***** ******** ************************** ******* **********

consensus_3256#0      CATTTCCATGTCCATTTTCTTGGGCTTTTGCTTGTAATTTTTGGNTTTCTTTAATTTCTT 360
consensus_3256#1      CATTTCCATGTCCATTTTCTTGGGCTTT-GCTTGTGATTTTTG--TTTTCTTGATTTCTT 158
                      **************************** ****** *******  ***  ** *******

consensus_3256#0      TTCTTNCTGCCTTTCCTNGATCTCCATGGATCAAAGACGGTAATATTTTTTCCAACGGAA 420
consensus_3256#1      T-CTTCCTGCCTT-CCTCGATCTCCATGGATCAAANACGTGAATATTTTTGCCNACGGAA 216
                      * *** ******* *** ***************** ***  ********* ** ******

consensus_3256#0      AAAGCATTTAATTTTAAAGGT---------------------------------- 441
consensus_3256#1      AAAGCATGTNATGTGAAGGTTTTTAGTTTTTTCAAAAAAAAAAAAAAAAAAAAAA 271
                      ******* * ** * ** * *