cluster # 3454

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Oryza sativa
cluster # 3454 cluster # 3454 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3454#0 length = 489 sequences # 1

consensus_3454#1 length = 413 sequences # 1

consensusID : consensus_3454#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [TTTTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATTACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACAATTCGACAACACTATGAGGATGGTAATGGTAATGTTTATTATGCAAAGTAATCAATTAGCACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAGCCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAGGTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCCAGGCCGACGAGGCGTTCGCCGACGCGTGGAAGGCGGACTCCCCGGCGTCCTCGGTCGCGGCCGCCGCGGCGTCGCGCGCCAAGGTGTACGTCTCGCCCAAGCTCTGGCTCCTCCGGCTCACCGTCATCGAGGCGCAGGACACGCT]

[+] EMBL CF320837             [TTTTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATTACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACAATTCGACAACACTATGAGGATGGTAATGGTAATGTTTATTATGCAAAGTAATCAATTAGCACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAGCCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAGGTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCCAGGCCGACGAGGCGTTCGCCGACGCGTGGAAGGCGGACTCCCCGGCGTCCTCGGTCGCGGCCGCCGCGGCGTCGCGCGCCAAGGTGTACGTCTCGCCCAAGCTCTGGCTCCTCCGGCTCACCGTCATCGAGGCGCAGGACACGCT]




>consensus_3454#0
TTTTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATT
ACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACA
ATTCGACAACACTATGAGGATGGTAATGGTAATGTTTATTATGCAAAGTAATCAATTAGC
ACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAG
CCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAG
GTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCCAGGCCGACGAGGCGTT
CGCCGACGCGTGGAAGGCGGACTCCCCGGCGTCCTCGGTCGCGGCCGCCGCGGCGTCGCG
CGCCAAGGTGTACGTCTCGCCCAAGCTCTGGCTCCTCCGGCTCACCGTCATCGAGGCGCA
GGACACGCT

consensusID : consensus_3454#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [TTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATTACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACAATTCGACAACACTATGAGGATGGCAATGGTTTTGTTTATTATGCAAAGTAATCAATTAGCACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAGCCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAGGTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCACGTACAGCGCCATGGCCACGAACACGCAGAGCGCGACGAACACCCCCGTGGCGCGCGGGTCGCGCCACGAC]

[+] EMBL CF320836             [TTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATTACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACAATTCGACAACACTATGAGGATGGCAATGGTTTTGTTTATTATGCAAAGTAATCAATTAGCACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAGCCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAGGTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCACGTACAGCGCCATGGCCACGAACACGCAGAGCGCGACGAACACCCCCGTGGCGCGCGGGTCGCGCCACGAC]




>consensus_3454#1
TTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATTAC
ATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACAAT
TCGACAACACTATGAGGATGGCAATGGTTTTGTTTATTATGCAAAGTAATCAATTAGCAC
TGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAGCC
GCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAGGT
AGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCACGTACAGCGCCATGGCCA
CGAACACGCAGAGCGCGACGAACACCCCCGTGGCGCGCGGGTCGCGCCACGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3454#0      TTTTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATT 60
consensus_3454#1      --TTTTAAAGAAAAATATTCATGCCTAATATCCATTAATTAATAATACGAATGAAATATT 58
                        **********************************************************

consensus_3454#0      ACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACA 120
consensus_3454#1      ACATGGGATAAACATAAACTAATTTCGTTTATTCTGTTCTACTAACATAGAAAATAGACA 118
                      ************************************************************

consensus_3454#0      ATTCGACAACACTATGAGGATGGTAATGGTAATGTTTATTATGCAAAGTAATCAATTAGC 180
consensus_3454#1      ATTCGACAACACTATGAGGATGGCAATGGTTTTGTTTATTATGCAAAGTAATCAATTAGC 178
                      *********************** ******  ****************************

consensus_3454#0      ACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAG 240
consensus_3454#1      ACTGCTTGCCGGATCATATATTCATATATCTTACATGATTCTTTCCGACATGGACGGCAG 238
                      ************************************************************

consensus_3454#0      CCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAG 300
consensus_3454#1      CCGCCGGAAGAAGTTGATCGCCGGCGCCGGCATCCGGTCCCGGAACATCGGGTGGCGGAG 298
                      ************************************************************

consensus_3454#0      GTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCCAGGCCGACGAGGCGTT 360
consensus_3454#1      GTAGTAGAACCCGGCGACCACGGCGACCACCTTGATGGGCACCACGTACAGCGCCATGGC 358
                      *******************************************  *  *  **    *  

consensus_3454#0      CGCCGACGCGTGGAAGGCGGACTCCCCGGCGTCCTCG-GTCGCGGCCGCCGCGGCGTCGC 419
consensus_3454#1      CACGAACACGCAGAGCGCGA-----CGAACACCCCCGTGGCGCGCGGGTCGCGCCACGAC 413
                      * *  ** **  **  ***      *   *  ** ** * ****   * **** *    *

consensus_3454#0      GCGCCAAGGTGTACGTCTCGCCCAAGCTCTGGCTCCTCCGGCTCACCGTCATCGAGGCGC 479
consensus_3454#1      ------------------------------------------------------------
                                                                                  

consensus_3454#0      AGGACACGCT 489
consensus_3454#1      ----------