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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1523 fasta sequence
[CGTATTTCCCTTTTTTCTTTTTCCTATCCCAATTGGGCATTTGGTAAACGGAGTTCGCTTCCCTCCAAAATGTCATCCACTTCCATGTCAGTCCGTTCTCCGGCGTCCTTCCCCTTCCCCACGGCAGCCGGAGCCCGCGGCCGCGTCGGCTCGGCGCAGCCGGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCGCCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGGCGGCGCGGCTGCCGCGTCGCTCGCCGTCCGGGGAGGCATGCAGCTCTTCAGGCAGGGAGATGTAGCTGGCTCAGTAGCAGAGTTCGATCGGGCAATTGAGCTCGATCAGCGGCAGAAGAAATGTATGTATTTGTAACACTTCAAAGTTCAGATTTCAGAGTGTGAGTCAGCAATGTACAACTGGCTGCAATTGTGCTTTGTTTCAGATCTCTGGCAAAGGGGGCTTTCACTCTACTACCTGGACAGGTGCATTATCATGATAGTAACTAGGTTCATAGATTCTGGAAACTGAACCAAATAATTTCAAGCCATGGACTGAAATTAAACCATGTGTAACCATCTCTTTTATCCTTGGTTTAATTGATCGAAATTCTGGGATAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGCTGCCAACCCGAATGACACTGAGGAGTCGATATGGTGCTTTCTCTGTGAAGCTCAGCTGTATGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTAGACTCAAGGTCTGTAATGCGAGAAGCTTATGCACTGTTCAAAGATGGTGGGGACCCTGAAAAGGTTGTTTGATTTGATGATAAATGAACATATCTCACCTGTTCTTACAAATTTCTGATAAACATTTACGCTAGTTTTCTTTTTCATCTTCAGTTGGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACTGGACTTTACTATGAATCTCAGAAGGATGCAGAGTTGGCAAAGTCCCACATTGTTGCTGCATGCAGGTCACCATATGGATCAAGGTCCGGTGATTACATGGCTTCACTTGCACTAGTTCATTGTCAATGCCGCAACTGGACTCTGGAGTGACAGAAGTATTATACAAACAAGTGGACCTAAACATTCTTGTTGAAGCCAACAGATAGGAAGCATCTTGGGTATGTTCTTCCCATGGCTCACTGTATTTAACTGGACTTCTTGGTCTCAAATTTTTGTAGATTTGGTAAATAGCACATTGCCACTCACAGTCAATGACGTAACGGCTCTTATGTGTCTATGACATGTAGATCCAGTAACAAATCCTAAATTGTCATTTGTAAGAGTGGCAATTAGTTAAATATCTCGCGTGATCTGGACTCTTCCTCTTCTTTTTTTCCCTTTTAACGAGACTGAAATGGCTGATCAAACACGGTGGAAGCATTTTAAAGATTCAACCTCTGAGAAAG]
[+] EMBL AK071988 [CGTATTTCCCTTTTTTCTTTTTCCTATCCCAATTGGGCATTTGGTAAACGGAGTTCGCTTCCCTCCAAAATGTCATCCACTTCCATGTCAGTCCGTTCTCCGGCGTCCTTCCCCTTCCCCACGGCAGCCGGAGCCCGCGGCCGCGTCGGCTCGGCGCAGCCGGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCGCCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGGCGGCGCGGCTGCCGCGTCGCTCGCCGTCCGGGGAGGCATGCAGCTCTTCAGGCAGGGAGATGTAGCTGGCTCAGTAGCAGAGTTCGATCGGGCAATTGAGCTCGATCAGCGGCAGAAGAAATGTATGTATTTGTAACACTTCAAAGTTCAGATTTCAGAGTGTGAGTCAGCAATGTACAACTGGCTGCAATTGTGCTTTGTTTCAGATCTCTGGCAAAGGGGGCTTTCACTCTACTACCTGGACAGGTGCATTATCATGATAGTAACTAGGTTCATAGATTCTGGAAACTGAACCAAATAATTTCAAGCCATGGACTGAAATTAAACCATGTGTAACCATCTCTTTTATCCTTGGTTTAATTGATCGAAATTCTGGGATAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGCTGCCAACCCGAATGACACTGAGGAGTCGATATGGTGCTTTCTCTGTGAAGCTCAGCTGTATGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTAGACTCAAGGTCTGTAATGCGAGAAGCTTATGCACTGTTCAAAGATGGTGGGGACCCTGAAAAGGTTGTTTGATTTGATGATAAATGAACATATCTCACCTGTTCTTACAAATTTCTGATAAACATTTACGCTAGTTTTCTTTTTCATCTTCAGTTGGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACTGGACTTTACTATGAATCTCAGAAGGATGCAGAGTTGGCAAAGTCCCACATTGTTGCTGCATGCAGGTCACCATATGGATCAAGGTCCGGTGATTACATGGCTTCACTTGCACTAGTTCATTGTCAATGCCGCAACTGGACTCTGGAGTGACAGAAGTATTATACAAACAAGTGGACCTAAACATTCTTGTTGAAGCCAACAGATAGGAAGCATCTTGGGTATGTTCTTCCCATGGCTCACTGTATTTAACTGGACTTCTTGGTCTCAAATTTTTGTAGATTTGGTAAATAGCACATTGCCACTCACAGTCAATGACGTAACGGCTCTTATGTGTCTATGACATGTAGATCCAGTAACAAATCCTAAATTGTCATTTGTAAGAGTGGCAATTAGTTAAATATCTCGCGTGATCTGGACTCTTCCTCTTCTTTTTTTCCCTTTTAACGAGACTGAAATGGCTGATCAAACACGGTGGAAGCATTTTAAAGATTCAACCTCTGAGAAAG]
consensusID : consensus_3542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence
[ACACCTTCTACACGATGATTTGAAAAGCGTATTTCCGTTTTTCTTTTCTTATCCATTTGGTAAACGGAGTTCGCTTCCCTCCAAAATGGCATCCACTTCCATGTCTGTCCGTTCTCCGGCGTCCTTCCCCTTCCCCACGGCGGCCGGAACCCGCGGCCGCGTCGGGTCGGCGCAGCCGGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCGCCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGGCGGCGCGGCTGCCGTATCGCTCGCCGACCGGCGAGGCATGCAGCTCTTCAGACAGGGAGATGTAGCCGGGTCAGTAGCAGAGTTCCATCGGGCGATTGAGCTGGATCAACGACAGAAGCAATATCTCTGGCAAAGGGGGCTTTCACTCTACTACATGGACAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGCTGCCAACCCGAATGACACTGAGGAGTCGTTATGGTGCTTTCTCTGTGAAGCACAGCTTTATGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTACACTCAAGGTCTGTAATGCGCGAAGCTTATGCTCTGTTCAAAGATGGTGGGGACCCTGAAAAGTTAGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACCG]
[+] EMBL CB619085 [ACACCTTCTACACGATGATTTGAAAAGCGTATTTCCGTTTTTCTTTTCTTATCCATTTGGTAAACGGAGTTCGCTTCCCTCCAAAATGGCATCCACTTCCATGTCTGTCCGTTCTCCGGCGTCCTTCCCCTTCCCCACGGCGGCCGGAACCCGCGGCCGCGTCGGGTCGGCGCAGCCGGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCGCCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGGCGGCGCGGCTGCCGTATCGCTCGCCGACCGGCGAGGCATGCAGCTCTTCAGACAGGGAGATGTAGCCGGGTCAGTAGCAGAGTTCCATCGGGCGATTGAGCTGGATCAACGACAGAAGCAATATCTCTGGCAAAGGGGGCTTTCACTCTACTACATGGACAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGCTGCCAACCCGAATGACACTGAGGAGTCGTTATGGTGCTTTCTCTGTGAAGCACAGCTTTATGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTACACTCAAGGTCTGTAATGCGCGAAGCTTATGCTCTGTTCAAAGATGGTGGGGACCCTGAAAAGTTAGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3542#0 -------------------CGTATTTCCCTTTTTTCTTTTTCCTATCCCAATTGGGCATT 41
consensus_3542#1 ACACCTTCTACACGATGATTTGAAAAGCGTATTTCCGTTTTTCTTTTCTTATC---CATT 57
* * * *** * **** ** * * ** ****
consensus_3542#0 TGGTAAACGGAGTTCGCTTCCCTCCAAAATGTCATCCACTTCCATGTCAGTCCGTTCTCC 101
consensus_3542#1 TGGTAAACGGAGTTCGCTTCCCTCCAAAATGGCATCCACTTCCATGTCTGTCCGTTCTCC 117
******************************* **************** ***********
consensus_3542#0 GGCGTCCTTCCCCTTCCCCACGGCAGCCGGAGCCCGCGGCCGCGTCGGCTCGGCGCAGCC 161
consensus_3542#1 GGCGTCCTTCCCCTTCCCCACGGCGGCCGGAACCCGCGGCCGCGTCGGGTCGGCGCAGCC 177
************************ ****** **************** ***********
consensus_3542#0 GGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCG 221
consensus_3542#1 GGTGGGCCCCAAGCTCCTCTCCTCGCCACTTCCGCCGGCGGCCACGCCCGCGGTGCCTCG 237
************************************************************
consensus_3542#0 CCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGG 281
consensus_3542#1 CCGGCTCCTCTTCCCGGTGGCTGCCGGCATTTGGGACTTCCTTTCCGGTGGCGGAGCAGG 297
************************************************************
consensus_3542#0 CGGCGCGGCTGCCGCGTCGCTCGCCGTCCGGGGAGGCATGCAGCTCTTCAGGCAGGGAGA 341
consensus_3542#1 CGGCGCGGCTGCCGTATCGCTCGCCGACCGGCGAGGCATGCAGCTCTTCAGACAGGGAGA 357
************** ********** **** ******************* ********
consensus_3542#0 TGTAGCTGGCTCAGTAGCAGAGTTCGATCGGGCAATTGAGCTCGATCAGCGGCAGAAGAA 401
consensus_3542#1 TGTAGCCGGGTCAGTAGCAGAGTTCCATCGGGCGATTGAGCTGGATCAACGACAGAAGCA 417
****** ** *************** ******* ******** ***** ** ****** *
consensus_3542#0 ATGTATGTATTTGTAACACTTCAAAGTTCAGATTTCAGAGTGTGAGTCAGCAATGTACAA 461
consensus_3542#1 AT---------------------------------------------------------- 419
**
consensus_3542#0 CTGGCTGCAATTGTGCTTTGTTTCAGATCTCTGGCAAAGGGGGCTTTCACTCTACTACCT 521
consensus_3542#1 --------------------------ATCTCTGGCAAAGGGGGCTTTCACTCTACTACAT 453
******************************** *
consensus_3542#0 GGACAGGTGCATTATCATGATAGTAACTAGGTTCATAGATTCTGGAAACTGAACCAAATA 581
consensus_3542#1 GGACAGGT---------------------------------------------------- 461
********
consensus_3542#0 ATTTCAAGCCATGGACTGAAATTAAACCATGTGTAACCATCTCTTTTATCCTTGGTTTAA 641
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 TTGATCGAAATTCTGGGATAGGTTCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGC 701
consensus_3542#1 -----------------------TCGAAGAAGGTGCAGAACAGTTCAGGCTGGATGTTGC 498
*************************************
consensus_3542#0 TGCCAACCCGAATGACACTGAGGAGTCGATATGGTGCTTTCTCTGTGAAGCTCAGCTGTA 761
consensus_3542#1 TGCCAACCCGAATGACACTGAGGAGTCGTTATGGTGCTTTCTCTGTGAAGCACAGCTTTA 558
**************************** ********************** ***** **
consensus_3542#0 TGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTAGACTCAAGGTCTGTAAT 821
consensus_3542#1 TGGGGTAGACGAAGCAAGGAAGCGCTTCCTGGAGGTTGGTTTACACTCAAGGTCTGTAAT 618
******************************************* ****************
consensus_3542#0 GCGAGAAGCTTATGCACTGTTCAAAGATGGTGGGGACCCTGAAAAGGTTGTTTGATTTGA 881
consensus_3542#1 GCGCGAAGCTTATGCTCTGTTCAAAGATGGTGGGGACCCTGAAAAGTTAGCTT------- 671
*** *********** ****************************** * * **
consensus_3542#0 TGATAAATGAACATATCTCACCTGTTCTTACAAATTTCTGATAAACATT-TACGCTAGTT 940
consensus_3542#1 ---CAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCTATTCATCATTATACACCG--- 725
**** ** *** * ** ***** * * **** *** *
consensus_3542#0 TTCTTTTTCATCTTCAGTTGGCTTCAAATTTCTCTAGTGGTTCTGAAGGTGAAATTTTCT 1000
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 ATTCATCATTATACACTGGACTTTACTATGAATCTCAGAAGGATGCAGAGTTGGCAAAGT 1060
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 CCCACATTGTTGCTGCATGCAGGTCACCATATGGATCAAGGTCCGGTGATTACATGGCTT 1120
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 CACTTGCACTAGTTCATTGTCAATGCCGCAACTGGACTCTGGAGTGACAGAAGTATTATA 1180
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 CAAACAAGTGGACCTAAACATTCTTGTTGAAGCCAACAGATAGGAAGCATCTTGGGTATG 1240
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 TTCTTCCCATGGCTCACTGTATTTAACTGGACTTCTTGGTCTCAAATTTTTGTAGATTTG 1300
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 GTAAATAGCACATTGCCACTCACAGTCAATGACGTAACGGCTCTTATGTGTCTATGACAT 1360
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 GTAGATCCAGTAACAAATCCTAAATTGTCATTTGTAAGAGTGGCAATTAGTTAAATATCT 1420
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 CGCGTGATCTGGACTCTTCCTCTTCTTTTTTTCCCTTTTAACGAGACTGAAATGGCTGAT 1480
consensus_3542#1 ------------------------------------------------------------
consensus_3542#0 CAAACACGGTGGAAGCATTTTAAAGATTCAACCTCTGAGAAAG 1523
consensus_3542#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||