cluster # 4127

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Oryza sativa
cluster # 4127 cluster # 4127 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4127#0 length = 561 sequences # 2

consensus_4127#1 length = 376 sequences # 1

consensusID : consensus_4127#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 561
fasta sequence

                              [TTTTTTTTTTTTTTTTTTATTTAGCAAGCTTAAGAGTTGGAAATGACCAACATCGCCGTAATGATAAGATGAGATAATTCTGAAATTAAACTTCAAATGCAGTTGATAGTGAGTGATACTGTCATGGCTATTATGTGTGTATGTGCATAAACCAATATCAATGGCCATTATGTGTGTATGTGCATACCCCAATATCAATGGCTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAATGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTGGACAACCTGCAAGGTGCACAAATTATTATGCGGATGTGTGGAGAAAAAGTTGTTATCTGCATATGTTCCAGTAATTTAGATAGCAGATCTAGTCTTTTGTCAAGCTAGATAGCATATAATAGGAAAGTACATGTACTCCTCCAAATTGAAGCAGCTAATGGTTCTATTTACTAAAAGAGTTTCCTGTATCGGCACTATTGCACAGTATTT]

[+] EMBL CF304384             [TTTTTTTTTTTTTTTTTTATTTAGCAAGCTTAAGAGTTGGAAATGACCAACATCGCCGTAATGATAAGATGAGATAATTCTGAAATTAAACTTCAAATGCAGTTGATAGTGAGTGATACTGTCATGGCTATTATGTGTGTATGTGCATAAACCAATATCAATGGCCATTATGTGTGTATGTGCATACCCCAATATCAATGGCTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAATGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTGGACAACCTGCAAGGTGCACAAATTATTATGCGGATGTGTGGAGAAAAAGTTGTTATCTGCATATGTTCCAGTAATTTAGATAGCAGATCTAGTCTTTTGTCAAGCTAGATAGCATATAATAGGAAAGTACATGTACTCCTCCAAATTGAAGCAGCTAATGGTTCTATTTACTAAAAGAGTTTCCTGTATCGGCACTATTGCACAGTATTT]
[+] EMBL CF303321             [TTTTTTTTTTTTTTTTTTATTTAGCAAGCTTAAGAGTTGGAAATGACCAACATCGCCGTAATGATAAGATGAGATAATTCTGAAATTAAACTTCAAATGCAGTTGATAGTGAGTGATACTGTCATGGCTATTATGTGTGTATGTGCATAAACCAATATCAATGGCCATTATGTGTGTATGTGCATACCCCAATATCAATGGCTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAATGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTGGACAACCTGCAAGGTGCACAAATTATTATGCGGATGTGTGGAGAAAAAGTTGTTATCTGCATATGTTCCAGTAATTTAGATAGCAGATCTAGTCTTTTGTCAAGCTAGATAGCATATAATAGGAAAGTACATGTACTCCTCCAAATTGAAGCAGCTAATGGTTCTATTTACTAAAAGAGTTTCCTGTATCGGCACTATTGCAC       ]




>consensus_4127#0
TTTTTTTTTTTTTTTTTTATTTAGCAAGCTTAAGAGTTGGAAATGACCAACATCGCCGTA
ATGATAAGATGAGATAATTCTGAAATTAAACTTCAAATGCAGTTGATAGTGAGTGATACT
GTCATGGCTATTATGTGTGTATGTGCATAAACCAATATCAATGGCCATTATGTGTGTATG
TGCATACCCCAATATCAATGGCTAATATGTGTGTACGTCAATATATACTTGTTTAATTTT
ATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAATGTT
TCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTGGACAACCTG
CAAGGTGCACAAATTATTATGCGGATGTGTGGAGAAAAAGTTGTTATCTGCATATGTTCC
AGTAATTTAGATAGCAGATCTAGTCTTTTGTCAAGCTAGATAGCATATAATAGGAAAGTA
CATGTACTCCTCCAAATTGAAGCAGCTAATGGTTCTATTTACTAAAAGAGTTTCCTGTAT
CGGCACTATTGCACAGTATTT

consensusID : consensus_4127#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [TTTTTTTTTTAGCAAGCTTAAGAGTTGGGAATGACAAAATCGGCGTAANTGATAAGATGAGATAATTCTGAAATTAAATTCAAATGGAGTTGATAGTGAAGTGATACTGGATGGGTATTATGTTGTGTATGTGCATAAACAATATCAAGTGGCATTCATGTGTGTATGTGCATACCCCAATATCAAGGGGTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAAGGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTTTTGGGACAACCTGGNAGGGTGCACAAATTATTATGCG]

[-] EMBL BM037984             [TTTTTTTTTTAGCAAGCTTAAGAGTTGGGAATGACAAAATCGGCGTAANTGATAAGATGAGATAATTCTGAAATTAAATTCAAATGGAGTTGATAGTGAAGTGATACTGGATGGGTATTATGTTGTGTATGTGCATAAACAATATCAAGTGGCATTCATGTGTGTATGTGCATACCCCAATATCAAGGGGTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAAGGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTTTTGGGACAACCTGGNAGGGTGCACAAATTATTATGCG]




>consensus_4127#1
TTTTTTTTTTAGCAAGCTTAAGAGTTGGGAATGACAAAATCGGCGTAANTGATAAGATGA
GATAATTCTGAAATTAAATTCAAATGGAGTTGATAGTGAAGTGATACTGGATGGGTATTA
TGTTGTGTATGTGCATAAACAATATCAAGTGGCATTCATGTGTGTATGTGCATACCCCAA
TATCAAGGGGTAATATGTGTGTACGTCAATATATACTTGTTTAATTTTATTCCCTCCCAC
CGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAAGGTTTCTCTTATTCAA
GACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTTTTGGGACAACCTGGNAGGGTG
CACAAATTATTATGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4127#0      TTTTTTTTTTTTTTTTTTATTTAGCAAGCTTAAGAGTTGGAAATGACCAACATCGCCGTA 60
consensus_4127#1      ------------TTTTTTTTTTAGCAAGCTTAAGAGTTGGGAATGAC-AAAATCGGCGTA 47
                                  ****** ********************* ****** ** **** ****

consensus_4127#0      AT-GATAAGATGAGATAATTCTGAAATTAAACTTCAAATGCAGTTGATAGTGA-GTGATA 118
consensus_4127#1      ANTGATAAGATGAGATAATTCTGAAATTAAA-TTCAAATGGAGTTGATAGTGAAGTGATA 106
                      *  **************************** ******** ************ ******

consensus_4127#0      CTGTCATGGCTATTATGT-GTGTATGTGCATAAACCAATATCAA-TGGCCATTATGTGTG 176
consensus_4127#1      CTGG-ATGGGTATTATGTTGTGTATGTGCATAAAC-AATATCAAGTGGCATTCATGTGTG 164
                      ***  **** ******** **************** ******** ****  * *******

consensus_4127#0      TATGTGCATACCCCAATATCAATGGCTAATATGTGTGTACGTCAATATATACTTGTTTAA 236
consensus_4127#1      TATGTGCATACCCCAATATCAAGGGGTAATATGTGTGTACGTCAATATATACTTGTTTAA 224
                      ********************** ** **********************************

consensus_4127#0      TTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAA 296
consensus_4127#1      TTTTATTCCCTCCCACCGAAGAATACATCAGTCAGAAAACTAAATGAATTCCCTAGTTAA 284
                      ************************************************************

consensus_4127#0      TGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTT----GG 352
consensus_4127#1      GGTTTCTCTTATTCAAGACTCGATCTATATGTTTCTCCAACTCTTTTTTTTTTTTTTGGG 344
                       *****************************************************    **

consensus_4127#0      ACAACCTG-CAAGGTGCACAAATTATTATGCGGATGTGTGGAGAAAAAGTTGTTATCTGC 411
consensus_4127#1      ACAACCTGGNAGGGTGCACAAATTATTATGCG---------------------------- 376
                      ********  * ********************                            

consensus_4127#0      ATATGTTCCAGTAATTTAGATAGCAGATCTAGTCTTTTGTCAAGCTAGATAGCATATAAT 471
consensus_4127#1      ------------------------------------------------------------
                                                                                  

consensus_4127#0      AGGAAAGTACATGTACTCCTCCAAATTGAAGCAGCTAATGGTTCTATTTACTAAAAGAGT 531
consensus_4127#1      ------------------------------------------------------------
                                                                                  

consensus_4127#0      TTCCTGTATCGGCACTATTGCACAGTATTT 561
consensus_4127#1      ------------------------------