|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1592 fasta sequence
[CATTTTTTTCCCGTTCAAAAAAAAATATTGACATTTTTTTCCCCAACTGCCGGCGATATGGCCGCTACGGCCGCCTCCTCCCTGTCCGCCGCCGCCGCCGCCGCTCGCCGGAGCTTCCCCTCCCGCCTCCGACTCCTAGCACGCCGCCGCCGCCTCCCGTTCTCGTCCACCGCCTCCTTCTCCGCCGCTGCGCCACCGGCTGCCGCGGCGAGCTTCGGCTGGGAGGACGCCCTCCGGGTCGCCGCCGACGACCGGCGGGGCGACGAGTCCGACCTCTCCGGGTACTCCCGGAAGGTCGACACCTGCAACCGAGGAATGGACAAGAAGGGGGAGTTCGTGGCGTTCATGGTGGAGGATCAGGTTGTGGGGTATATCCACCAAGGTTTTGTTGAACATCTAAGAGACTTCCGTGATGTTTTTACCATTGCCTCGGGCAGCAATGGAAGCAATAATGTTGAACATGTGACTCTCCATTCATCTCTAAGGACTCCAGATGAACGAACAAATGCTGTTGGAAGTGTCATAAGAAGTCTAGGAGATCTGATTCCAGGTATTCGAAATGAGCTCTATCCAATAACATCATCTTATGGCATGCCTGTGTACTTCTCTCTGGAACGTGCTGCTGCCCCCTACTTTGGCTTATGGAGTTCATATGAATGGGTATGTTGAGAAGGAGGGCCAGAAATTTCTTTGGATTGCTAAGAGAAGTGATACGAAGCAGACCTTTCCAGGAATGCTTGATCATCTTGTTGCAGGTGGCCTGCCATATGGAATCTCCTGTGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAGCAATGCTACCTCTGTTGGAGCGATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTCTGTTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGGTAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGGGTATATAAACCCAGATTACCATGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGATTGCTCGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAAGACTTTACTCTGTCAAGTGCTTTCATCTCCTCCAGTGATCACTGTTTGTAATCACATTTGTCGAGCATTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATATGCATACAATCTGAAGCATCAACGGTGGCTCGGATTATCCAACTAGCAAGTGCAAATGTTTGCTTGATATTTGATTTTTGCCAAACAAGTTCGGGTGTTTGATTTGCTTCAGCGAATTTGTGATGATGGACACCAGGCGTTGCGGAAGGTGGATCACATGGCATGGAACCATGGATGGATAGTTCGTCCCTTATCCTGTCTCTTTTTTTTTTTTTCTGGAAAACAGAGGATAGTACTGGATTTGAGTATGAACATAAATAGTGAGGGAATATGAATTCATATATGGAGGA]
[+] EMBL AK067539 [CATTTTTTTCCCGTTCAAAAAAAAATATTGACATTTTTTTCCCCAACTGCCGGCGATATGGCCGCTACGGCCGCCTCCTCCCTGTCCGCCGCCGCCGCCGCCGCTCGCCGGAGCTTCCCCTCCCGCCTCCGACTCCTAGCACGCCGCCGCCGCCTCCCGTTCTCGTCCACCGCCTCCTTCTCCGCCGCTGCGCCACCGGCTGCCGCGGCGAGCTTCGGCTGGGAGGACGCCCTCCGGGTCGCCGCCGACGACCGGCGGGGCGACGAGTCCGACCTCTCCGGGTACTCCCGGAAGGTCGACACCTGCAACCGAGGAATGGACAAGAAGGGGGAGTTCGTGGCGTTCATGGTGGAGGATCAGGTTGTGGGGTATATCCACCAAGGTTTTGTTGAACATCTAAGAGACTTCCGTGATGTTTTTACCATTGCCTCGGGCAGCAATGGAAGCAATAATGTTGAACATGTGACTCTCCATTCATCTCTAAGGACTCCAGATGAACGAACAAATGCTGTTGGAAGTGTCATAAGAAGTCTAGGAGATCTGATTCCAGGTATTCGAAATGAGCTCTATCCAATAACATCATCTTATGGCATGCCTGTGTACTTCTCTCTGGAACGTGCTGCTGCCCCCTACTTTGGCTTATGGAGTTCATATGAATGGGTATGTTGAGAAGGAGGGCCAGAAATTTCTTTGGATTGCTAAGAGAAGTGATACGAAGCAGACCTTTCCAGGAATGCTTGATCATCTTGTTGCAGGTGGCCTGCCATATGGAATCTCCTGTGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAGCAATGCTACCTCTGTTGGAGCGATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTCTGTTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGGTAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGGGTATATAAACCCAGATTACCATGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGATTGCTCGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAAGACTTTACTCTGTCAAGTGCTTTCATCTCCTCCAGTGATCACTGTTTGTAATCACATTTGTCGAGCATTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATATGCATACAATCTGAAGCATCAACGGTGGCTCGGATTATCCAACTAGCAAGTGCAAATGTTTGCTTGATATTTGATTTTTGCCAAACAAGTTCGGGTGTTTGATTTGCTTCAGCGAATTTGTGATGATGGACACCAGGCGTTGCGGAAGGTGGATCACATGGCATGGAACCATGGATGGATAGTTCGTCCCTTATCCTGTCTCTTTTTTTTTTTTTCTGGAAAACAGAGGATAGTACTGGATTTGAGTATGAACATAAATAGTGAGGGAATATGAATTCATATATGGAGGA]
consensusID : consensus_4165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CTCCCATATGGAATCTCCTGTGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAGCAATGCTACCTCTGTTGGAGCCATTTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTCTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGCCATGGGTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGATTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATCTTAAATTCAACCCTTTACTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCACATTTGTCGAGCCTTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAACCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTTTGCCCAACAAGTTCAGTGTTTGATTTGCTTAAAAAAAAAAAAAAAAAA]
[-] EMBL CA763332 [CTCCCATATGGAATCTCCTGTGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAGCAATGCTACCTCTGTTGGAGCCATTTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTCTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGCCATGGGTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGATTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATCTTAAATTCAACCCTTTACTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCACATTTGTCGAGCCTTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAACCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTTTGCCCAACAAGTTCAGTGTTTGATTTGCTTAAAAAAAAAAAAAAAAAA]
consensusID : consensus_4165#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[ACGAGACAAGGGGGTTGGAGCCATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTTTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGGGTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGACTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAACCCTTTACTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCCCATTTGTCGAGCCTTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAACCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTTTGCCCAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA763361 [ACGAGACAAGGGGGTTGGAGCCATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTTTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGATGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAGGACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGGGTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGACTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAACCCTTTACTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCCCATTTGTCGAGCCTTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAACCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTTTGCCCAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 CATTTTTTTCCCGTTCAAAAAAAAATATTGACATTTTTTTCCCCAACTGCCGGCGATATG 60
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 GCCGCTACGGCCGCCTCCTCCCTGTCCGCCGCCGCCGCCGCCGCTCGCCGGAGCTTCCCC 120
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 TCCCGCCTCCGACTCCTAGCACGCCGCCGCCGCCTCCCGTTCTCGTCCACCGCCTCCTTC 180
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 TCCGCCGCTGCGCCACCGGCTGCCGCGGCGAGCTTCGGCTGGGAGGACGCCCTCCGGGTC 240
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 GCCGCCGACGACCGGCGGGGCGACGAGTCCGACCTCTCCGGGTACTCCCGGAAGGTCGAC 300
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 ACCTGCAACCGAGGAATGGACAAGAAGGGGGAGTTCGTGGCGTTCATGGTGGAGGATCAG 360
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 GTTGTGGGGTATATCCACCAAGGTTTTGTTGAACATCTAAGAGACTTCCGTGATGTTTTT 420
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 ACCATTGCCTCGGGCAGCAATGGAAGCAATAATGTTGAACATGTGACTCTCCATTCATCT 480
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 CTAAGGACTCCAGATGAACGAACAAATGCTGTTGGAAGTGTCATAAGAAGTCTAGGAGAT 540
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 CTGATTCCAGGTATTCGAAATGAGCTCTATCCAATAACATCATCTTATGGCATGCCTGTG 600
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 TACTTCTCTCTGGAACGTGCTGCTGCCCCCTACTTTGGCTTATGGAGTTCATATGAATGG 660
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 GTATGTTGAGAAGGAGGGCCAGAAATTTCTTTGGATTGCTAAGAGAAGTGATACGAAGCA 720
consensus_4165#1 ----------------------------------------CTCCCATATGGAATCTCCTG 20
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 GACCTTTCCAGGAATGCTTGATCATCTTGTTGCAGGTGGCCTGCCATATGGAATCTCCTG 780
consensus_4165#1 TGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAG 80
consensus_4165#2 -----------------------------------------------------------A 1
consensus_4165#0 TGAAGAGAATGTTATCAAGGAATGTGAAGAGGAAGCAGGAATCCCAAGATCCATTTCAAG 840
consensus_4165#1 CAATGCTACCTCTGTTGGAGCCATTTCTTACATGGATATTGAAGGGTTTAGATACAAAAG 140
consensus_4165#2 CGAGACAAGGGG-GTTGGAGCCATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAG 60
consensus_4165#0 CAATGCTACCTCTGTTGGAGCGATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAG 900
* * * * ******** ** ***********************************
consensus_4165#1 GGATGTTCTCTTCTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGA 200
consensus_4165#2 GGATGTTCTCTTTTGCTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGA 120
consensus_4165#0 GGATGTTCTCTTCTGTTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGA 960
************ ** ********************************************
consensus_4165#1 TGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAG 260
consensus_4165#2 TGGAGAGGTTGATAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAG 180
consensus_4165#0 TGGAGAGGTTGGTAGCTTCAGATTAATCCCTGTACCACATGCTGCAAATATTATCCGGAG 1020
*********** ************************************************
consensus_4165#1 GACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGCCATGG 320
consensus_4165#2 GACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGG 240
consensus_4165#0 GACACATTTTTTCAAGCCAAATTGCAACCTTGTGATTATTGACTTCCTCTTCCGTCATGG 1080
****************************************************** *****
consensus_4165#1 GTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGA 380
consensus_4165#2 GTATATAAACCCAGATTACCTTGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGA 300
consensus_4165#0 GTATATAAACCCAGATTACCATGGCTACCTAAAGCTGCTGCAAAGCTTGAGGAGAGGTGA 1140
******************** ***************************************
consensus_4165#1 TTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATCTTAAATTCAACCCTTTA 440
consensus_4165#2 CTGCTTGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAACCCTTTA 360
consensus_4165#0 TTGCTCGTAGTGCTGCCTTCAGTTCAGACTGATTATGAGGATTTTAAATTCAAGACTTTA 1200
**** ************************************ ********** *****
consensus_4165#1 CTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCACATTTGTCGAGCC 500
consensus_4165#2 CTCTGTCAAGTGCTTTCATGTCCTCCAGTGATCGCAGTGTGTAATCCCATTTGTCGAGCC 420
consensus_4165#0 CTCTGTCAAGTGCTTTCATCTCCTCCAGTGATCACTGTTTGTAATCACATTTGTCGAGCA 1260
******************* ************* * ** ******* ************
consensus_4165#1 TTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAA 560
consensus_4165#2 TTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATACACATACAATCAGAAGAA 480
consensus_4165#0 TTGGTTCAGATTCTTGAAAACCTTAACCTCCATGGCTCCATATGCATACAATCTGAAGCA 1320
****************************************** ********* **** *
consensus_4165#1 CCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTT 620
consensus_4165#2 CCAACTGTGGCTAGGATTATCCAACTAGCAAGTGCAAATGCTTGCTTGATATTTGATTTT 540
consensus_4165#0 TCAACGGTGGCTCGGATTATCCAACTAGCAAGTGCAAATGTTTGCTTGATATTTGATTTT 1380
**** ****** *************************** *******************
consensus_4165#1 TGCCCAACAAGTTCAG-TGTTTGATTTGCTTAAAAAAAAAAAAAAAAAA----------- 668
consensus_4165#2 TGCCCAAAAA---------------------AAAAAAAAAAAAAAAAA------------ 567
consensus_4165#0 TGCCAAACAAGTTCGGGTGTTTGATTTGCTTCAGCGAATTTGTGATGATGGACACCAGGC 1440
**** ** ** * ** * *
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 GTTGCGGAAGGTGGATCACATGGCATGGAACCATGGATGGATAGTTCGTCCCTTATCCTG 1500
consensus_4165#1 ------------------------------------------------------------
consensus_4165#2 ------------------------------------------------------------
consensus_4165#0 TCTCTTTTTTTTTTTTTCTGGAAAACAGAGGATAGTACTGGATTTGAGTATGAACATAAA 1560
consensus_4165#1 --------------------------------
consensus_4165#2 --------------------------------
consensus_4165#0 TAGTGAGGGAATATGAATTCATATATGGAGGA 1592
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||