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Oryza sativa
cluster # 4383 cluster # 4383       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4383#0 length = 2120 sequences # 3  

consensusID : consensus_4383#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2120
fasta sequence
                              [CCACCACCACCACCACCATGGCCACCGCCTCCACCTCCGGCGACCCCACCGCCGCCGCCGGCGAGCCCACGCCGTCGTCCTCAGCATCCGCGCAGCCACGGCAGCCGGCGTCCCGCATATCCCACATCGTGCGCACCTACCTCGACCTCTCCTCCAACCCCAAGAAGCGCCGCGCCGCTCCCAAGAGCCACCCCAAGCCCGCCGCCGCCGCCGCCGGCCAAGGCGCCCCCGATGCCGGAGACGGGAAGGACGGCGGCGGGAAGGCGGCGGCGACCCCATCGTCGGCGGCGCAGCCCACGACCACGCGGCTCCTCCGCGAGCTCGGCGTCCGGGTCTCCCGCTACACGCACGAGGAGCGCCGCGACATCGTCCTCCGCTACATGCAGAAGCGGAGCGGCCGCCAGGGCGTCAAGCGCGCCACCGCCAAGGCCCCATCGAGGCAGGCTCTCGCGGAGCGGCGGCGGCGGGGTGCGAGAGGGCAGTTCCTCGGCAAGGAGGGCGCCAAGACTGTAGATAAACCAGAAGAAGATCCAGAGGTGCCGCCAGAAGTTATTGCTAACGCTGGAGGAGTGCCCATAGTTGGAATGGTTTTCGAGAATGAAGAGAAAGCATATGAGTATTATGCTAGTTATGCTGGAAATGTAGGATTCAGTGTTCGAAAAGGATTGTGGGATAAAACGGTGAAAAATGTTGCTAGGTCAAGGGTCTTTGTATGCTCTAGGGAGGGATTTCGCTCAAAGAATGAGGCCAAAAGACCTCGCCCAGAGACTAGGACAGGTTGTCCTGCACGGATAGCTATAAAATTGGTATCCAATGGCAAGTACCGGGTAGCAGAATTTGTGGAAGATCACAATCACCAGCTTGCTGCACCATTTGATATAGATATGCTGAAGTCAGAGAGAGTGTTGACCAAGGTTCAACCAGGAAACCGAAATGCTAGTAACATTCCTCCAGGATGCAAGAATTACATTCGGGCCAAGTCTTCAACACACATGAATTCAGAGGACCTTGGAGCTCTAATGGATTATTTTCGAAGAATGAAGAGTGATAATCCCTCTTTTTACTATGCCATTCAGGTGGATGAAAATGATAAAGCAACAAATGTCTTCTGGGCTGATGCAAGATCAATAGTAGACTATCATTATTTCTGTGATGTGATCTGCTTTGACACAACACACAGATCAAATGACTGCAGAAAACCCTTAGCTTTGTTTTTGGGTATGAACCATCATAGGCAAACAATCATATTTGGCTCTGCTTTTCTGTATGATGAAACTGTTGAATCTTTCAAGTGGCTTCTCGAGACCTTTAAGAGTGCCATGTGTGGGAAACAGCCAAAGACGATATTGACAGATCGATCTGCTGCTTTGAAGGAAGCCCTGAGTCTCACCTGGCCTGGTACAATTCACCGTTCTTGTGTGTGGCAAATATACCAGAATGCTTTTAAGTCCTTAGAACATGTTTTTAATACTCTTGAGGAATTCACACATGATTTTCACCACTGCATGTTTGATATCGAGGATGACCAGGAGTTTGATGAGATATGGAATGTGATAATCAAGAAGTACAGCCTCAAAGGAGAGGAATGGTTAACTAAGTTGTATGAAGATCGGGAAAATTGGGCCTTGCCATATAACCGGCAAATATTCTTTGGGGACATTAAAGGGATGTTACAAGTAGAAACTTCTTGCGTTGGGCTGAGAGAGTTCTTGGATTGTGAGAAAGATCTCTCTAAATTTTTTATGTTCTTTGAAAGCTCAATGGAGAAGAGGAGGCAAGAAGAGATACAAGCTGATTACCAAGCCAGCGAAGGGGCACCAAGAATATCTCTGCCACTGCTATGGCAAGCTGCAAAAGTGTATACACCAATCATCTTTGAGTTATTTAGAAAGGAATATGAACTGTGTATGGACTGTATGGCTTATAGTTGTGGGGAGTTTGGCTCTCTTTCTGAGTACATGATCACTGTTAAGAATAAAACTAAAGACCAGCTTGTGCGGTTTGACTCATCAGATGGCACAGTTGCATGTACTTGTAAAAAATTTGAAAATGCTGGAATATTATGGTGCCATATATTAAAGGNATATGAGCTGAGGAATGTTAAAGAGTCCAGGCCGCAG]

[+] EMBL AK072027             [CCACCACCACCACCACCATGGCCACCGCCTCCACCTCCGGCGACCCCACCGCCGCCGCCGGCGAGCCCACGCCGTCGTCCTCAGCATCCGCGCAGCCACGGCAGCCGGCGTCCCGCATATCCCACATCGTGCGCACCTACCTCGACCTCTCCTCCAACCCCAAGAAGCGCCGCGCCGCTCCCAAGAGCCACCCCAAGCCCGCCGCCGCCGCCGCCGGCCAAGGCGCCCCCGATGCCGGAGACGGGAAGGACGGCGGCGGGAAGGCGGCGGCGACCCCATCGTCGGCGGCGCAGCCCACGACCACGCGGCTCCTCCGCGAGCTCGGCGTCCGGGTCTCCCGCTACACGCACGAGGAGCGCCGCGACATCGTCCTCCGCTACATGCAGAAGCGGAGCGGCCGCCAGGGCGTCAAGCGCGCCACCGCCAAGGCCCCATCGAGGCAGGCTCTCGCGGAGCGGCGGCGGCGGGGTGCGAGAGGGCAGTTCCTCGGCAAGGAGGGCGCCAAGACTGTAGATAAACCAGAAGAAGATCCAGAGGTGCCGCCAGAAGTTATTGCTAACGCTGGAGGAGTGCCCATAGTTGGAATGGTTTTCGAGAATGAAGAGAAAGCATATGAGTATTATGCTAGTTATGCTGGAAATGTAGGATTCAGTGTTCGAAAAGGATTGTGGGATAAAACGGTGAAAAATGTTGCTAGGTCAAGGGTCTTTGTATGCTCTAGGGAGGGATTTCGCTCAAAGAATGAGGCCAAAAGACCTCGCCCAGAGACTAGGACAGGTTGTCCTGCACGGATAGCTATAAAATTGGTATCCAATGGCAAGTACCGGGTAGCAGAATTTGTGGAAGATCACAATCACCAGCTTGCTGCACCATTTGATATAGATATGCTGAAGTCAGAGAGAGTGTTGACCAAGGTTCAACCAGGAAACCGAAATGCTAGTAACATTCCTCCAGGATGCAAGAATTACATTCGGGCCAAGTCTTCAACACACATGAATTCAGAGGACCTTGGAGCTCTAATGGATTATTTTCGAAGAATGAAGAGTGATAATCCCTCTTTTTACTATGCCATTCAGGTGGATGAAAATGATAAAGCAACAAATGTCTTCTGGGCTGATGCAAGATCAATAGTAGACTATCATTATTTCTGTGATGTGATCTGCTTTGACACAACACACAGATCAAATGACTGCAGAAAACCCTTAGCTTTGTTTTTGGGTATGAACCATCATAGGCAAACAATCATATTTGGCTCTGCTTTTCTGTATGATGAAACTGTTGAATCTTTCAAGTGGCTTCTCGAGACCTTTAAGAGTGCCATGTGTGGGAAACAGCCAAAGACGATATTGACAGATCGATCTGCTGCTTTGAAGGAAGCCCTGAGTCTCACCTGGCCTGGTACAATTCACCGTTCTTGTGTGTGGCAAATATACCAGAATGCTTTTAAGTCCTTAGAACATGTTTTTAATACTCTTGAGGAATTCACACATGATTTTCACCACTGCATGTTTGATATCGAGGATGACCAGGAGTTTGATGAGATATGGAATGTGATAATCAAGAAGTACAGCCTCAAAGGAGAGGAATGGTTAACTAAGTTGTATGAAGATCGGGAAAATTGGGCCTTGCCATATAACCGGCAAATATTCTTTGGGGACATTAAAGGGATGTTACAAGTAGAAACTTCTTGCGTTGGGCTGAGAGAGTTCTTGGATTGTGAGAAAGATCTCTCTAAATTTTTTATGTTCTTTGAAAGCTCAATGGAGAAGAGGAGGCAAGAAGAGATACAAGCTGATTACCAAGCCAGCGAAGGGGCACCAAGAATATCTCTGCCACTGCTATGGCAAGCTGCAAAAGTGTATACACCAATCATCTTTGAGTTATTTAGAAAGGAATATGAACTGTGTATGGACTGTATGGCTTATAGTTGTGGGGAGTTTGGCTCTCTTTCTGAGTACATGATCACTGTTAAGAATAAAACTAAAGACCAGCTTGTGCGGTTTGACTCATCAGATGGCACAGTTGCATGTACTTGTAAAAAATTTGAAAATGCTGGAATA                                                            ]
[+] EMBL CF323480             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTTTGGGTATGAACCATCATAGGCAAACAATCATATTTGGCTCTGCTTTTCTGTATGATGAAACTGTTGAATCTTTCAAGTGGCTTCTCGAGACCTTTAAGAGTGCCATGTGTGGGAAACAGCCAAAGACGATATTGACAGATCGATCTGCTGCTTTGAAGGAAGCCCTGAGTCTCACCTGGCCTGGTACAATTCACCGTTCTTGTGTGTGGCAAATATACCAGAATGCTTTTAAGTCCTTAGAACATGTTTTTAATACTCTTGAGGAATTCACACATGATTTTCACCACTGCATGTTTGATATCGAGGATGACCAGGAGTTTGATGAGATATGGAATGTGATAATCAAGAAGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C72902               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGTAGAAACTTCTTGCGTTGGGCTGAGAGAGTTCTTGGATTGTGAGAAAGATCTCTCTAAATTTTTTATGTTCTTTGAAAGCTCAATGGAGAAGAGGAGGCAAGAAGAGATACAAGCTGATTACCAAGCCAGCGAAGGGGCACCAAGAATATCTCTGCCACTGCTATGGCAAGCTGCAAAAGTGTATACACCAATCATCTTTGAGTTATTTAGAAAGGAATATGAACTGTGTATGGACTGTATGGCTTATAGTTGTGGGGAGTTTGGCTCTCTTTCTGAGTACATGATCACTGTTAAGAATAAAACTAAAGACCAGCTTGTGCGGTTTGACTCATCAGATGGCACAGTTGCATGNACTTGTAAAAAATTTG AAATGCTGGAATATTATGGTGCCATATATTAAAGGNATATGAGCTGAGGAATGTTAAAGAGTCCAGGCCGCAG]


>consensus_4383#0 CCACCACCACCACCACCATGGCCACCGCCTCCACCTCCGGCGACCCCACCGCCGCCGCCG GCGAGCCCACGCCGTCGTCCTCAGCATCCGCGCAGCCACGGCAGCCGGCGTCCCGCATAT CCCACATCGTGCGCACCTACCTCGACCTCTCCTCCAACCCCAAGAAGCGCCGCGCCGCTC CCAAGAGCCACCCCAAGCCCGCCGCCGCCGCCGCCGGCCAAGGCGCCCCCGATGCCGGAG ACGGGAAGGACGGCGGCGGGAAGGCGGCGGCGACCCCATCGTCGGCGGCGCAGCCCACGA CCACGCGGCTCCTCCGCGAGCTCGGCGTCCGGGTCTCCCGCTACACGCACGAGGAGCGCC GCGACATCGTCCTCCGCTACATGCAGAAGCGGAGCGGCCGCCAGGGCGTCAAGCGCGCCA CCGCCAAGGCCCCATCGAGGCAGGCTCTCGCGGAGCGGCGGCGGCGGGGTGCGAGAGGGC AGTTCCTCGGCAAGGAGGGCGCCAAGACTGTAGATAAACCAGAAGAAGATCCAGAGGTGC CGCCAGAAGTTATTGCTAACGCTGGAGGAGTGCCCATAGTTGGAATGGTTTTCGAGAATG AAGAGAAAGCATATGAGTATTATGCTAGTTATGCTGGAAATGTAGGATTCAGTGTTCGAA AAGGATTGTGGGATAAAACGGTGAAAAATGTTGCTAGGTCAAGGGTCTTTGTATGCTCTA GGGAGGGATTTCGCTCAAAGAATGAGGCCAAAAGACCTCGCCCAGAGACTAGGACAGGTT GTCCTGCACGGATAGCTATAAAATTGGTATCCAATGGCAAGTACCGGGTAGCAGAATTTG TGGAAGATCACAATCACCAGCTTGCTGCACCATTTGATATAGATATGCTGAAGTCAGAGA GAGTGTTGACCAAGGTTCAACCAGGAAACCGAAATGCTAGTAACATTCCTCCAGGATGCA AGAATTACATTCGGGCCAAGTCTTCAACACACATGAATTCAGAGGACCTTGGAGCTCTAA TGGATTATTTTCGAAGAATGAAGAGTGATAATCCCTCTTTTTACTATGCCATTCAGGTGG ATGAAAATGATAAAGCAACAAATGTCTTCTGGGCTGATGCAAGATCAATAGTAGACTATC ATTATTTCTGTGATGTGATCTGCTTTGACACAACACACAGATCAAATGACTGCAGAAAAC CCTTAGCTTTGTTTTTGGGTATGAACCATCATAGGCAAACAATCATATTTGGCTCTGCTT TTCTGTATGATGAAACTGTTGAATCTTTCAAGTGGCTTCTCGAGACCTTTAAGAGTGCCA TGTGTGGGAAACAGCCAAAGACGATATTGACAGATCGATCTGCTGCTTTGAAGGAAGCCC TGAGTCTCACCTGGCCTGGTACAATTCACCGTTCTTGTGTGTGGCAAATATACCAGAATG CTTTTAAGTCCTTAGAACATGTTTTTAATACTCTTGAGGAATTCACACATGATTTTCACC ACTGCATGTTTGATATCGAGGATGACCAGGAGTTTGATGAGATATGGAATGTGATAATCA AGAAGTACAGCCTCAAAGGAGAGGAATGGTTAACTAAGTTGTATGAAGATCGGGAAAATT GGGCCTTGCCATATAACCGGCAAATATTCTTTGGGGACATTAAAGGGATGTTACAAGTAG AAACTTCTTGCGTTGGGCTGAGAGAGTTCTTGGATTGTGAGAAAGATCTCTCTAAATTTT TTATGTTCTTTGAAAGCTCAATGGAGAAGAGGAGGCAAGAAGAGATACAAGCTGATTACC AAGCCAGCGAAGGGGCACCAAGAATATCTCTGCCACTGCTATGGCAAGCTGCAAAAGTGT ATACACCAATCATCTTTGAGTTATTTAGAAAGGAATATGAACTGTGTATGGACTGTATGG CTTATAGTTGTGGGGAGTTTGGCTCTCTTTCTGAGTACATGATCACTGTTAAGAATAAAA CTAAAGACCAGCTTGTGCGGTTTGACTCATCAGATGGCACAGTTGCATGTACTTGTAAAA AATTTGAAAATGCTGGAATATTATGGTGCCATATATTAAAGGNATATGAGCTGAGGAATG TTAAAGAGTCCAGGCCGCAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)