|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1657 fasta sequence
[CGCACCTCGCCCCTCTCCTTCGCCATCGTCAACCTCCGACCCACCCGCCCTGGTCATATCCTTTATTTCTGCCAATTATGTGTATGCACAGCTGCTCTACTCCTCTCTCTAATTTAGTGCCTTCTAGTATCTACTTCACATTGCGGTATTATCTGCTCTCAACTTCTCATACTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGCAAAAAAAAAAAACTTCTCTTGCTATTCATCAATGAAATGTGCCTCTGTTTCAAAAAGAAAAAAAAAGGAAAGAAAGAAAGACTCTGCACTGAACTACATAAGTAATGTACGATATCGGTTCATTGAAAAATGGTAGTGGTGTACATCACAGTGCTCACTTGTTTTTGCCTTCAGAAGGGTTATTGTGCTTTCTATTTCAAGACAATTAATACTACCTGCTTTACCTTGTTAATTTCTGGTCGTGCTAATTACTTCAGTTAATCCCTGGTGACAACTGGCAACTCAGCTCTTGTTGCCTTTGTCCTATGATGGATTGTATGTGGCACTGCATTTTTGACAGCCTAAGACTTTTAACTCCCCCCCCCACCCCCTTCCTTAACTTAAATTATACATGTTCTTATATGCCCAAAGAGTCTTGTGAAACTATTTGCTGATCTTAGCCCTGATGAGACTCGTGATTTGTGGATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATTCAGGACGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCATCGTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAAATCTTAAGCACAAGTACAATGCAAATGAAACACGAAGTGCTGGTTTGAAGAAATTGAGTAACACGTAAGCATGGATACCCACCATCTCCTTCTCCGGCTCTCTCTTCGTGGAGGACACTAGTTTTGCCTCTTCTTCAGTCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATTTTGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGATCTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTTGCAACAGCAGAAAGTAAAATAAAAATCTTAGTTCTTACTTACTCCCCATGGGTTCTATTAATGGTTTCTGTTCTTTTGGCCCATCTGCTGCACTTGTAACAAGAGGTAAAAGAACTTCAGTCGGAAAGTAGAATGAACTAGCGGATAAATCAAACTCTGTATGTAACTTCTCCATTTTTTAAGTTTTGTTT]
[+] EMBL AK099904 [CGCACCTCGCCCCTCTCCTTCGCCATCGTCAACCTCCGACCCACCCGCCCTGGTCATATCCTTTATTTCTGCCAATTATGTGTATGCACAGCTGCTCTACTCCTCTCTCTAATTTAGTGCCTTCTAGTATCTACTTCACATTGCGGTATTATCTGCTCTCAACTTCTCATACTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGCAAAAAAAAAAAACTTCTCTTGCTATTCATCAATGAAATGTGCCTCTGTTTCAAAAAGAAAAAAAAAGGAAAGAAAGAAAGACTCTGCACTGAACTACATAAGTAATGTACGATATCGGTTCATTGAAAAATGGTAGTGGTGTACATCACAGTGCTCACTTGTTTTTGCCTTCAGAAGGGTTATTGTGCTTTCTATTTCAAGACAATTAATACTACCTGCTTTACCTTGTTAATTTCTGGTCGTGCTAATTACTTCAGTTAATCCCTGGTGACAACTGGCAACTCAGCTCTTGTTGCCTTTGTCCTATGATGGATTGTATGTGGCACTGCATTTTTGACAGCCTAAGACTTTTAACTCCCCCCCCCACCCCCTTCCTTAACTTAAATTATACATGTTCTTATATGCCCAAAGAGTCTTGTGAAACTATTTGCTGATCTTAGCCCTGATGAGACTCGTGATTTGTGGATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATTCAGGACGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCATCGTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAAATCTTAAGCACAAGTACAATGCAAATGAAACACGAAGTGCTGGTTTGAAGAAATTGAGTAACACGTAAGCATGGATACCCACCATCTCCTTCTCCGGCTCTCTCTTCGTGGAGGACACTAGTTTTGCCTCTTCTTCAGTCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATTTTGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGATCTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTTGCAACAGCAGAAAGTAAAATAAAAATCTTAGTTCTTACTTACTCCCCATGGGTTCTATTAATGGTTTCTGTTCTTTTGGCCCATCTGCTGCACTTGTAACAAGAGGTAAAAGAACTTCAGTCGGAAAGTAGAATGAACTAGCGGATAAATCAAACTCTGTATGTAACTTCTCCATTTTTTAAGTTTTGTTT]
consensusID : consensus_4710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 975 fasta sequence
[ATTCGATCTTCCTTTCATAAGTAGTCAAATTTAGAACAAGTTACATGTTATGTTAGTCCCAGTCAATCGACAGTACAATTAGTGACTACAGTCTCATACTAGCTTCTTGAGTTAATTCGTCGATTTCACTTGAATTGAAACATCTATTTCCTACATGTCAAATAGAGCTCATCACCTTGAACTATGAAGAACAGATCATAGGTGTGTATGGCTTCCAGCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATCTTGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGATCTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTGGGGTGAGGGCGAGGAGAGGCGAGCCATGTCCATCCATGAGCAGCAGGTCGCCGGAGAAGAGCTTGCGGCGGCGCGAGTAGTTGTCAACACGGAAGGCGAGGCTGCCGGCGTCGTCGTAGACGGAGAAGCCGTCGGTGCCCTGGAACCCCATGCTGGACCTCTTCCACACCGTGTACACCGCCGCTCGCGGCGCTGCCGTTGAGGCGGCGGCGGCGGCGGCATCTTGGCGTTGATACGAAGGGTGTATCCGACTCATCGATCTTCCTCGCCGCGATCGGATCTACCTATCTATCTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTGGCGTTGGACGAGAGATGTAGTGCTCGACTCGTCAG]
[-] EMBL AK103389 [ATTCGATCTTCCTTTCATAAGTAGTCAAATTTAGAACAAGTTACATGTTATGTTAGTCCCAGTCAATCGACAGTACAATTAGTGACTACAGTCTCATACTAGCTTCTTGAGTTAATTCGTCGATTTCACTTGAATTGAAACATCTATTTCCTACATGTCAAATAGAGCTCATCACCTTGAACTATGAAGAACAGATCATAGGTGTGTATGGCTTCCAGCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATCTTGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGATCTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTGGGGTGAGGGCGAGGAGAGGCGAGCCATGTCCATCCATGAGCAGCAGGTCGCCGGAGAAGAGCTTGCGGCGGCGCGAGTAGTTGTCAACACGGAAGGCGAGGCTGCCGGCGTCGTCGTAGACGGAGAAGCCGTCGGTGCCCTGGAACCCCATGCTGGACCTCTTCCACACCGTGTACACCGCCGCTCGCGGCGCTGCCGTTGAGGCGGCGGCGGCGGCGGCATCTTGGCGTTGATACGAAGGGTGTATCCGACTCATCGATCTTCCTCGCCGCGATCGGATCTACCTATCTATCTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTGGCGTTGGACGAGAGATGTAGTGCTCGACTCGTCAG]
consensusID : consensus_4710#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence
[GATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATTCAGTTGAATAAATATTGCTACTTATCAGGATGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCACATCCTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGATGAATGCAAAAAACGAGACATTAGACCTGGATATTGAAAGAAAAGATAGAACGATGGAAGAAATGGCCCAAGAAGCCAAAGAATATCGTGCTCTTTTCTCCTAGAAAATGTCTATTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAAATCTTAAGCACAAGTACAATGCAAATNNNNCACGAAGTGCTGGTTTGANNNNNNTGAGTAACANNNNNGCATGGATANNNANCATCNNNTNCTCCGGCTCTCTNNTCGNNNNNNNNACTNNNNNNGNCTCNNNNNNNTAGCTCAT]
[+] EMBL CF197299 [GATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCTTCTTCGCTCACATTCACAATTCAGTTGAATAAATATTGCTACTTATCAGGATGGACCTCACTCTGGCCAAACAGTTCCACATGTTCACGTTCACATCCTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAACAATAATGGCATGATGAATGCAAAAAACGAGACATTAGACCTGGATATTGAAAGAAAAGATAGAACGATGGAAGAAATGGCCCAAGAAGCCAAAGAATATCGTGCTCTTTTCTCCTAGAAAATGTCTATTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAAATCTTAAGCACAAGTACAATGCAAATNNNNCACGAAGTGCTGGTTTGANNNNNNTGAGTAACANNNNNGCATGGATANNNANCATCNNNTNCTCCGGCTCTCTNNTCGNNNNNNNNACTNNNNNNGNCTCNNNNNNNTAGCTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4710#0 CGCACCTCGCCCCTCTCCTTCGCCATCGTCAACCTCCGACCCACCCGCCCTGGTCATATC 60
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 CTTTATTTCTGCCAATTATGTGTATGCACAGCTGCTCTACTCCTCTCTCTAATTTAGTGC 120
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 CTTCTAGTATCTACTTCACATTGCGGTATTATCTGCTCTCAACTTCTCATACTTTATTAT 180
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAT 240
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 TATTATTATTATTTGCAAAAAAAAAAAACTTCTCTTGCTATTCATCAATGAAATGTGCCT 300
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 CTGTTTCAAAAAGAAAAAAAAAGGAAAGAAAGAAAGACTCTGCACTGAACTACATAAGTA 360
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 ATGTACGATATCGGTTCATTGAAAAATGGTAGTGGTGTACATCACAGTGCTCACTTGTTT 420
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 -----ATTCGATCTTCCTTTCATAAGTAGTCAAATTTAGAACAAGTTACATGTTATGTTA 55
consensus_4710#0 TTGCCTTCAGAAGGGTTATTGTGCTTTCTATTTCAAGACAATTAATACTACCTGCTTTAC 480
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 GTCCCAGTCAATCGACAGTACAATTAGTGACTACAGTCTCATACTAGCTTCTTGAGTTAA 115
consensus_4710#0 CTTGTTAATTTCTGGTCGTGCTAATTACTTCAGTTAATCCCTGGTGACAACTGGCAACTC 540
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 TTCGTCGATTTCACTTGAATTGAAACATCTATTTCCTACATGTCAAATAGAGCTCATCAC 175
consensus_4710#0 AGCTC-TTGTTGCCTTTGTCCTATGATGGATTGTATGTGGCACTGCATTTTTGACAGCCT 599
consensus_4710#2 ------------------GATCATGGCAAAGGATAT-TGGTG-TACGTGTTGAGCAGTAC 40
consensus_4710#1 CTTGAACTATGAAGAACAGATCATAGGTGTGTATGGCTTCCAGCAGATCCGATCCAGAAC 235
** * * * ***
consensus_4710#0 AAGACTTTTAACTCC--CCCCCCCACCCCCTTCCTTAACTTAAATTATACATGTTCTTAT 657
consensus_4710#2 CAGAG----GGCTTC--TTCGCTCACATTCACAATTCAGTTGAAT---AAATATTGCTAC 91
consensus_4710#1 AATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAAC 295
* * * *** * ** ** * * * *
consensus_4710#0 -ATGCCCAAAGAGTCTTGTGAAACTA---TTTGCTGATC--TTAGCCCTGATGAGACTC- 710
consensus_4710#2 -TTATCAGGATGGACCTC----ACT----CTGGCCAAACAGTTCCACATGTTCACGTTC- 141
consensus_4710#1 ATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGC 355
* * * * * * * * * * * *
consensus_4710#0 -GTGATTTGTGGATCATGGCAAAGGATATTGGTGTACGTGTTGAGCAGTACCAGAGGGCT 769
consensus_4710#2 -ACATCCTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATAA-CAATA----ATGGCA 195
consensus_4710#1 GACCTCCTCACCGCCGCTGTTGCGGATCTTGCAGCTTCTTCTCTTGAAACTGCCCTCGAT 415
* *** *** * * * *
consensus_4710#0 TCTTCGCTCACATTCACAATTCAGGACGGACCTCACTCTGGCCAAACAGTTCCACATGTT 829
consensus_4710#2 TGATGAATGCAAAAAACGAGACATTA--GACCTGGATATTGAAAGAAAAGATAGAACGAT 253
consensus_4710#1 TGA-GAAGGCGGGAACATGGCCAGTAC-GATCTGACGACGCATGGGTACATCCTGACATG 473
* ** * ** ** * *
consensus_4710#0 CACGTTCATCGTTCCCCGAAGGAAGGAAGATTTTGAGAACAATGATA--ACAATAATGGC 887
consensus_4710#2 GGAAGAAATGGCCCAAGAAGCCAAAGAATATCGTGCTCTTTTCTCCT--AGAA-AATGTC 310
consensus_4710#1 TGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGT 533
* * * * * * ** * *
consensus_4710#0 ATGTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAA-ATCTTAAGCACAA 946
consensus_4710#2 TATTATATTGTCAATATCTTTCGAATCTTTCTGAGAGGGACTGCAA-ATCTTAAGCACAA 369
consensus_4710#1 TGTGATCTTGCCCTCTTGCCTTGG-CCTTCTTCTGACGCTCTGTAACAATTCCATTGGTC 592
** *** * * * * *** * ** * *** ** * * *
consensus_4710#0 GTACAATGCAAATGAAACACGAAGTGCTGGTTTGAAGAAATTGAGTAACACGTAAGCATG 1006
consensus_4710#2 GTACAATGCAAATNNNNCACGAAGTGCTGGTTTGANNNNNNTGAGTAACANNNNNGCATG 429
consensus_4710#1 ATGCA-TGCTGATAATCTGTGGGGTGAGGGCGAGGAGAGGC-GAGCCATGTCCATCCATG 650
* ** *** ** * *** ** * *** * ****
consensus_4710#0 GATACCCACCATCTCCT------TCTCCGGCT-CTCTCTTCGTGGAGGACACTAGTTTTG 1059
consensus_4710#2 GATANNNANCATCNNNT------NCTCCGGCT-CTCTNNTCGNNNNNNNNACTNNNNNNG 482
consensus_4710#1 AGCAGCAGGTCGCCGGAGAAGAGCTTGCGGCGGCGCGAGTAGTTGTCAACACGGAAGGCG 710
* * * **** * * * * ** *
consensus_4710#0 CCTCTTCTTCAGTCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATC 1119
consensus_4710#2 NCTCNNNNNN--NTAGCTCAT--------------------------------------- 501
consensus_4710#1 AGGCTGCCGGCGTCGTCGTAGACGGAGAAGCCGTCGGTGCCCTGGAACCCCATGCTGGAC 770
*
consensus_4710#0 TACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAA-GAGTCAGTGACAATGATG 1178
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 CTCTTCCACACCGTGTACACCGCCGCTCGCGGCGCTGCCGTTGAGGCGGCGGCGGCGGCG 830
consensus_4710#0 CTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATTT 1238
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 GCATCTTGGCGTTGATACGAAGGGTGTATCCGACTCATCGATCTTCCTCGCCGCGATCGG 890
consensus_4710#0 TGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGAT 1298
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ATCTACCTATCTATCTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTGGCGTTGGACG 950
consensus_4710#0 CTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAA 1358
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 AGAGATGTAGTGCTCGACTCGTCAG----------------------------------- 975
consensus_4710#0 CTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGCCCTCTTGCCTTGGCCTTCTT 1418
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 CTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTTGCAACAGCAGAA 1478
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 AGTAAAATAAAAATCTTAGTTCTTACTTACTCCCCATGGGTTCTATTAATGGTTTCTGTT 1538
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 CTTTTGGCCCATCTGCTGCACTTGTAACAAGAGGTAAAAGAACTTCAGTCGGAAAGTAGA 1598
consensus_4710#2 ------------------------------------------------------------
consensus_4710#1 ------------------------------------------------------------
consensus_4710#0 ATGAACTAGCGGATAAATCAAACTCTGTATGTAACTTCTCCATTTTTTAAGTTTTGTTT 1657
consensus_4710#2 -----------------------------------------------------------
consensus_4710#1 -----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||