cluster # 4743

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Oryza sativa
cluster # 4743 cluster # 4743 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4743#0 length = 1154 sequences # 1

consensus_4743#1 length = 603 sequences # 1
consensus_4743#2 length = 180 sequences # 1

consensusID : consensus_4743#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1154
fasta sequence

                              [CATCGCCGCATAGAAATTCCACCGAACACATAGCGAGCAAGAAGAGGAGGAGGAGGAGAAGCGAAGGAGACAAGGAAACAGCGCGACATGCCGTGCATCCCGGCGTCCAGCCCTGGCATCCCGCACCAGCACCAGCACCAGCACCACCGGGCGCTAGCAGGCGTCGGCATGGCGGTCGGGTGCGCGGCGGAGGCGGCCGTGGCCGCGGCGGGTGTCGCGGGGACGAGGTGCGGGGCGCACGACGGGGAGGTGCCTATGGAGGTGGCGCGGCACCACGAGCACGCGGAGCCAGGGTCGGGGCGGTGCTGCTCCGCGGTGGTCCAGCACGTAGCGGCGCCGGCGGCGGCGGTGTGGTCGGTGGTGCGGCGGTTCGACCAGCCCCAGGCGTACAAGCGGTTCGTCCGCAGCTGCGCGCTGCTCGCCGGGGACGGCGGCGTGGGCACGCTCCGCGAGGTGCGCGTCGTGTCGGGCCTCCCCGCGGCGTCCTCCCGCGAGCGCCTCGAGATCCTCGACGACGAGAGCCACGTCCTCAGCTTCCGCGTCGTCGGCGGCGAGCACCGCCTCAAGAACTACCTCTCGGTCACCACCGTCCACCCGTCCCCGTCCGCGCCGACGGTCGCCACCGTCGTGGTGGAGTCCTACGTCGTCGACGTGCCCCCGGGCAACACGCCCGAGGACACCCGCGTGTTCGTCGACACCATCGTCAAGTGCAACCTCCAGTCTCTCGCCAAGACCGCCGAGAAGCTCGCCGCCGGCGCGAGGGCCGCCGGCTCGTGAGCGCTCTCCACCGCCGGGCCACCGATCGTTTTTTTCCGGGCGGATGGATGTGTGTTTCTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCCCTCTGGTTTCTTCACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGTATTTAAAGTTGTGCTACA]

[+] EMBL AK108414             [CATCGCCGCATAGAAATTCCACCGAACACATAGCGAGCAAGAAGAGGAGGAGGAGGAGAAGCGAAGGAGACAAGGAAACAGCGCGACATGCCGTGCATCCCGGCGTCCAGCCCTGGCATCCCGCACCAGCACCAGCACCAGCACCACCGGGCGCTAGCAGGCGTCGGCATGGCGGTCGGGTGCGCGGCGGAGGCGGCCGTGGCCGCGGCGGGTGTCGCGGGGACGAGGTGCGGGGCGCACGACGGGGAGGTGCCTATGGAGGTGGCGCGGCACCACGAGCACGCGGAGCCAGGGTCGGGGCGGTGCTGCTCCGCGGTGGTCCAGCACGTAGCGGCGCCGGCGGCGGCGGTGTGGTCGGTGGTGCGGCGGTTCGACCAGCCCCAGGCGTACAAGCGGTTCGTCCGCAGCTGCGCGCTGCTCGCCGGGGACGGCGGCGTGGGCACGCTCCGCGAGGTGCGCGTCGTGTCGGGCCTCCCCGCGGCGTCCTCCCGCGAGCGCCTCGAGATCCTCGACGACGAGAGCCACGTCCTCAGCTTCCGCGTCGTCGGCGGCGAGCACCGCCTCAAGAACTACCTCTCGGTCACCACCGTCCACCCGTCCCCGTCCGCGCCGACGGTCGCCACCGTCGTGGTGGAGTCCTACGTCGTCGACGTGCCCCCGGGCAACACGCCCGAGGACACCCGCGTGTTCGTCGACACCATCGTCAAGTGCAACCTCCAGTCTCTCGCCAAGACCGCCGAGAAGCTCGCCGCCGGCGCGAGGGCCGCCGGCTCGTGAGCGCTCTCCACCGCCGGGCCACCGATCGTTTTTTTCCGGGCGGATGGATGTGTGTTTCTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCCCTCTGGTTTCTTCACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGTATTTAAAGTTGTGCTACA]




>consensus_4743#0
CATCGCCGCATAGAAATTCCACCGAACACATAGCGAGCAAGAAGAGGAGGAGGAGGAGAA
GCGAAGGAGACAAGGAAACAGCGCGACATGCCGTGCATCCCGGCGTCCAGCCCTGGCATC
CCGCACCAGCACCAGCACCAGCACCACCGGGCGCTAGCAGGCGTCGGCATGGCGGTCGGG
TGCGCGGCGGAGGCGGCCGTGGCCGCGGCGGGTGTCGCGGGGACGAGGTGCGGGGCGCAC
GACGGGGAGGTGCCTATGGAGGTGGCGCGGCACCACGAGCACGCGGAGCCAGGGTCGGGG
CGGTGCTGCTCCGCGGTGGTCCAGCACGTAGCGGCGCCGGCGGCGGCGGTGTGGTCGGTG
GTGCGGCGGTTCGACCAGCCCCAGGCGTACAAGCGGTTCGTCCGCAGCTGCGCGCTGCTC
GCCGGGGACGGCGGCGTGGGCACGCTCCGCGAGGTGCGCGTCGTGTCGGGCCTCCCCGCG
GCGTCCTCCCGCGAGCGCCTCGAGATCCTCGACGACGAGAGCCACGTCCTCAGCTTCCGC
GTCGTCGGCGGCGAGCACCGCCTCAAGAACTACCTCTCGGTCACCACCGTCCACCCGTCC
CCGTCCGCGCCGACGGTCGCCACCGTCGTGGTGGAGTCCTACGTCGTCGACGTGCCCCCG
GGCAACACGCCCGAGGACACCCGCGTGTTCGTCGACACCATCGTCAAGTGCAACCTCCAG
TCTCTCGCCAAGACCGCCGAGAAGCTCGCCGCCGGCGCGAGGGCCGCCGGCTCGTGAGCG
CTCTCCACCGCCGGGCCACCGATCGTTTTTTTCCGGGCGGATGGATGTGTGTTTCTTCGG
CGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCCCTCTGGTTTCTTCACATTTGAC
CCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACC
ATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCC
ATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGAT
AGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGTATTT
AAAGTTGTGCTACA

consensusID : consensus_4743#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [GGAGGGNCANTCTNTTCGTTTNTGGGGGGCGCTCAGATACTTGGTACNCGTCAACCGTCCCNTCGGGCGGNGGCGCCACCGNTGNGGGGGGNTCTAATTTTTTGNAGGGCCCCGGGGCAAAAAGCCGGGGGAAAACGGGTGTTTGTTGAACACATTGTTCANGNGCAAACCTCCAGTTTTTTTGCCAAGGGNCGCCGGNGAAGTTCCCCGCCGGGCGNGAGGGCCGCCGGGTTNGTGAGCGNTTTTCCACCGCGGGGCCACCGATCGTTTTTTTTCCGGGGCGGGATGGATGTGTGTTTCTTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCTCTTTGGTTTCTTCAACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGT]

[-] EMBL BE229049             [GGAGGGNCANTCTNTTCGTTTNTGGGGGGCGCTCAGATACTTGGTACNCGTCAACCGTCCCNTCGGGCGGNGGCGCCACCGNTGNGGGGGGNTCTAATTTTTTGNAGGGCCCCGGGGCAAAAAGCCGGGGGAAAACGGGTGTTTGTTGAACACATTGTTCANGNGCAAACCTCCAGTTTTTTTGCCAAGGGNCGCCGGNGAAGTTCCCCGCCGGGCGNGAGGGCCGCCGGGTTNGTGAGCGNTTTTCCACCGCGGGGCCACCGATCGTTTTTTTTCCGGGGCGGGATGGATGTGTGTTTCTTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCTCTTTGGTTTCTTCAACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTTCGT]




>consensus_4743#1
GGAGGGNCANTCTNTTCGTTTNTGGGGGGCGCTCAGATACTTGGTACNCGTCAACCGTCC
CNTCGGGCGGNGGCGCCACCGNTGNGGGGGGNTCTAATTTTTTGNAGGGCCCCGGGGCAA
AAAGCCGGGGGAAAACGGGTGTTTGTTGAACACATTGTTCANGNGCAAACCTCCAGTTTT
TTTGCCAAGGGNCGCCGGNGAAGTTCCCCGCCGGGCGNGAGGGCCGCCGGGTTNGTGAGC
GNTTTTCCACCGCGGGGCCACCGATCGTTTTTTTTCCGGGGCGGGATGGATGTGTGTTTC
TTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCTCTTTGGTTTCTTCAAC
ATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAGACACAC
AAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGACAGCCTG
CAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAA
ACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTGTACGTT
CGT

consensusID : consensus_4743#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [ATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCCGTTCTCTGGCNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF329566             [ATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCCGTTCTCTGGCNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4743#2
ATGACATGTATAATTGACAGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATT
GAGTACATACATACATATACATAAACACGATAGTAGTATTAGATATTTAGATCCGTTCTC
TGGCNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4743#0      CATCGCCGCATAGAAATTCCACCGAACACATAGCGAGCAAGAAGAGGAGGAGGAGGAGAA 60
consensus_4743#1      ------------------------------------------------------------
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      GCGAAGGAGACAAGGAAACAGCGCGACATGCCGTGCATCCCGGCGTCCAGCCCTGGCATC 120
consensus_4743#1      ------------------------------------------------------------
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      CCGCACCAGCACCAGCACCAGCACCACCGGGCGCTAGCAGGCGTCGGCATGGCGGTCGGG 180
consensus_4743#1      ------------------------------------------------------------
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      TGCGCGGCGGAGGCGGCCGTGGCCGCGGCGGGTGTCGCGGGGACGAGGTGCGGGGCGCAC 240
consensus_4743#1      ------------------------------------------------------------
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      GACGGGGAGGTGCCTATGGAGGTGGCGCGGCACCACGAGCACGCGGAGCCAGGGTCGGGG 300
consensus_4743#1      ------------------------------------------------------------
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      CGGTGCTGCTCCGCGGTGGTCCAGCACGTAGCGGCGCCGGCGGCGGCGGTGTGGTCGGTG 360
consensus_4743#1      ------------------------------------------------------------
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      GTGCGGCGGTTCGACCAGCCCCAGGCGTACAAGCGGTTCGTCCGCAGCTGCGCGCTGCTC 420
consensus_4743#1      ------------------------------------------------------------
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      GCCGGGGACGGCGGCGTGGGCACGCTCCGCGAGGTGCGCGTCGTGTCGGGCCTCCCCGCG 480
consensus_4743#1      ------------------------------------------------------------
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      GCGTCCTCCCGCGAGCGCCTCGAGATCCTCGACGACGAGAGCCACGTCCTCAGCTTCCGC 540
consensus_4743#1      -----------------------------------GGAGGGNCANTCTNTTCGTTTNTG- 24
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      GTCGTCGGCGGCGAGCACCGCCTCAAGAACTACCTCTCGGTCACCACCGTCCACCCGTCC 600
consensus_4743#1      ------GGGGGCG--------CTCAGATACTTGGTACNCGTCA--ACCGTCCCNTCG--- 65
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      CCGTCCGCGCCGACGGTCGCCACCGTCGTGGTGGAGTCCTACGTCGTCGACGTGCCCCCG 660
consensus_4743#1      --------GGCGGNGG-CGCCACCGNTGNGG-GGGGNTCTAATTTTTTGNAGGGCCCCGG 115
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      GGCAACACGCCCGAGGACACCCGCGTGTTCGTCGACACCATCGT-CAAGTGCAA-CCTCC 718
consensus_4743#1      GGCAAAAAGCCGGGGGAAAAC-GGGTGTTTGTTGAACACATTGTTCANGNGCAAACCTCC 174
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      AGTCTCTC-GCCAAGA-CCGCCG-AGAAGCTCGCCGCCGG-CGCGAGGGCCGCCGG-CTC 773
consensus_4743#1      AGTTTTTTTGCCAAGGGNCGCCGGNGAAGTTCCCCGCCGGGCGNGAGGGCCGCCGGGTTN 234
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      GTGAGCGCTCT-CCACCGCCGGGCCACCGATCGTTTTTTTCC--GGGCGG-ATGGATGTG 829
consensus_4743#1      GTGAGCGNTTTTCCACCGCGGGGCCACCGATCGTTTTTTTTCCGGGGCGGGATGGATGTG 294
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      TGTTTCTT-CGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCCCTCTGGTTTC 888
consensus_4743#1      TGTTTCTTTCGGCGCGTGAGAGCTTTCTCCTTTTTTTCCCCCTTTTTCCTCTTTGGTTTC 354
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      TTCA-CATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAG 947
consensus_4743#1      TTCAACATTTGACCCCCTCTTTTTTTTCCTCTTTATTTTTTTCCCTCGTTGTTGCGAGAG 414
consensus_4743#2      ------------------------------------------------------------
                                                                                  

consensus_4743#0      ACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGAC 1007
consensus_4743#1      ACACACAAACACCATCCACCCTTGTCCAAAAAGATTCAAGAAATGACATGTATAATTGAC 474
consensus_4743#2      ------------------------------------------ATGACATGTATAATTGAC 18
                                                                ******************

consensus_4743#0      AGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATAT 1067
consensus_4743#1      AGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATAT 534
consensus_4743#2      AGCCTGCAATTCCATTTGTATGCTCGAGTTGGTTGGTGTATTGAGTACATACATACATAT 78
                      ************************************************************

consensus_4743#0      ACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTG 1127
consensus_4743#1      ACATAAACACGATAGTAGTATTAGATATTTAGATCTGTTCTCTGGCACAAATTTAAAGTG 594
consensus_4743#2      ACATAAACACGATAGTAGTATTAGATATTTAGATCCGTTCTCTGGCNCAAAAAAAAAAAA 138
                      *********************************** ********** ****   ***   

consensus_4743#0      TACGTTCGTATTTAAAGTTGTGCTACA--------------- 1154
consensus_4743#1      TACGTTCGT--------------------------------- 603
consensus_4743#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 180
                       *