cluster # 4773

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Oryza sativa
cluster # 4773 cluster # 4773 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4773#0 length = 501 sequences # 2

consensus_4773#1 length = 458 sequences # 1

consensusID : consensus_4773#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 501
fasta sequence

                              [GAGTAATGATTTCCAATGCCATCAAAACTTTCTTTGAGCCAGCAGACAAACTAAAAAAGGATGCTAGCTTTTGGGGTTTGATGTGTGTTGTCCTGGGTATAATTTCAATAATATCAATACCGGTGGAGTACTTTATGTTTGGAATAGCTGGAGGTAAACTTGTAGAGCGTGTCCGTGCCTTGTCATTCCGGAGTATTATTCACCAAGAAGTTGCTTGGTTTGATGATCCTAGGAATTCCAGTGGAGCGCTTGGTGCAAGATTATCAGTAGGATGCTTTTGAATGTCCGGCGGTTTAGGTTGGGAGACAATCTTGCATTGGCAAGTTCAAGGCGTCTCAACACTTATCACAAGGATTTGTCAAAGGCATGATAGCGGACTGGAAGCTCACTTTGATCATCCTTTTGTGTGATTCCACTTGTGGGTCTTCAAGGTTATGCTCAAGTTAAGTTCCTGAAGGGGTTCAGTGAAGATGCCAAGATGTTGTATGAGGATGCAAGTCA]

[+] EMBL OSC111271            [GAGTAATGATTTCCAATGCCATCAAAACTTTCTTTGAGCCAGCAGACAAACTAAAAAAGGATGCTAGCTTTTGGGGTTTGATGTGTGTTGTCCTGGGTATAATTTCAATAATATCAATACCGGTGGAGTACTTTATGTTTGGAATAGCTGGAGGTAAACTTGTAGAGCGTGTCCGTGCCTTGTCATTCCGGAGTATTATTCACCAAGAAGTTGCTTGGTTTGATGATCCTAGGAATTCCAGTGGAGCGCTTGGTGCAAGATTATCAGTAGGATGCTTTTGAATGTCCGGCGGTTTAGGTTGGGAGACAATCTTGCATTGGCAAGTTCAAGGCGTCTCAACACTTATCACAAGGATTTGTCAAAGGC                                                                                                                                       ]
[+] EMBL C26201               [                                                 ACTAAAAAAGGATGCTAGCTTTTGGGGTTTGATGTGTGTTGTCCTGGGTATAATTTCAATAATATCAATACCGGTGGAGTACTTTATGTTTGGAATAGCTGGAGGTAAACTTGTAGAGCGTGTCCGTGCCTTGTCATNCCGGAGTATTATTCACCAAGAAGTTGCTTGGTTTGATGATCCTAGGAATTCCAGTGGAGCGCTTGGTGCAAGATTATCAGTA GATGC TTTGAATGTCCGGC GTTTA GTT GGAGACAATCTTGCATTGGC AGTTCAGGTCGTCTCAACACTTATCAC AGGAATTGTCATAGCGATGATAGCGGACTGGAAGCTCACTTTGATCATCCTTTTGTGTGATTCCACTTGTGGGTCTTCAAGGTTATGCTCAAGTTAAGTTCCTGAAGGGGTTCAGTGAAGATGCCAAGATGTTGTATGAGGATGCAAGTCA]




>consensus_4773#0
GAGTAATGATTTCCAATGCCATCAAAACTTTCTTTGAGCCAGCAGACAAACTAAAAAAGG
ATGCTAGCTTTTGGGGTTTGATGTGTGTTGTCCTGGGTATAATTTCAATAATATCAATAC
CGGTGGAGTACTTTATGTTTGGAATAGCTGGAGGTAAACTTGTAGAGCGTGTCCGTGCCT
TGTCATTCCGGAGTATTATTCACCAAGAAGTTGCTTGGTTTGATGATCCTAGGAATTCCA
GTGGAGCGCTTGGTGCAAGATTATCAGTAGGATGCTTTTGAATGTCCGGCGGTTTAGGTT
GGGAGACAATCTTGCATTGGCAAGTTCAAGGCGTCTCAACACTTATCACAAGGATTTGTC
AAAGGCATGATAGCGGACTGGAAGCTCACTTTGATCATCCTTTTGTGTGATTCCACTTGT
GGGTCTTCAAGGTTATGCTCAAGTTAAGTTCCTGAAGGGGTTCAGTGAAGATGCCAAGAT
GTTGTATGAGGATGCAAGTCA

consensusID : consensus_4773#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [AAGATGCCAAGATGTTGTATGAAGATGCAAGTCAAGTGGCTACTGATGCAGTAAGCAGCATCAGGACTGTAGCTTCCTTTTGTTCTGAGAAAAGAGTGATGACAATGTATGATAATAAATGTGAAGCTTCGAAGAATCAAGGAGTTAGAACAGGAATGGTTGGAGGCCTTGGTTTTGGTTTCTCATTCTTGATGTTGTACCTAACATATGGTCTCTGTTTCTATGTCGGAGCACAATTCGTACGCCACAATAAAACTACTTTTGGGGACGTTTTCAAGGTTTTCTTTGCACTGGTGTTGGCAACTATTGGAATATCTCAAACAAGTGCGATGGCTTCTGATTCTACAAAGGCCAAGGATTCAGCTATCTCCATATTTGCTTTGCTAGACCGCAAGTCACAAATTGACTCGNGTAGGTTATGAGGGGTAGGGCCATTGGCCACCGGCAAAGGGGAACAT]

[+] EMBL C26111               [AAGATGCCAAGATGTTGTATGAAGATGCAAGTCAAGTGGCTACTGATGCAGTAAGCAGCATCAGGACTGTAGCTTCCTTTTGTTCTGAGAAAAGAGTGATGACAATGTATGATAATAAATGTGAAGCTTCGAAGAATCAAGGAGTTAGAACAGGAATGGTTGGAGGCCTTGGTTTTGGTTTCTCATTCTTGATGTTGTACCTAACATATGGTCTCTGTTTCTATGTCGGAGCACAATTCGTACGCCACAATAAAACTACTTTTGGGGACGTTTTCAAGGTTTTCTTTGCACTGGTGTTGGCAACTATTGGAATATCTCAAACAAGTGCGATGGCTTCTGATTCTACAAAGGCCAAGGATTCAGCTATCTCCATATTTGCTTTGCTAGACCGCAAGTCACAAATTGACTCGNGTAGGTTATGAGGGGTAGGGCCATTGGCCACCGGCAAAGGGGAACAT]




>consensus_4773#1
AAGATGCCAAGATGTTGTATGAAGATGCAAGTCAAGTGGCTACTGATGCAGTAAGCAGCA
TCAGGACTGTAGCTTCCTTTTGTTCTGAGAAAAGAGTGATGACAATGTATGATAATAAAT
GTGAAGCTTCGAAGAATCAAGGAGTTAGAACAGGAATGGTTGGAGGCCTTGGTTTTGGTT
TCTCATTCTTGATGTTGTACCTAACATATGGTCTCTGTTTCTATGTCGGAGCACAATTCG
TACGCCACAATAAAACTACTTTTGGGGACGTTTTCAAGGTTTTCTTTGCACTGGTGTTGG
CAACTATTGGAATATCTCAAACAAGTGCGATGGCTTCTGATTCTACAAAGGCCAAGGATT
CAGCTATCTCCATATTTGCTTTGCTAGACCGCAAGTCACAAATTGACTCGNGTAGGTTAT
GAGGGGTAGGGCCATTGGCCACCGGCAAAGGGGAACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4773#0      GAGTAATGATTTCCA-ATGCCAT-CAAAACTTTCTTTGAGCCAGCAGACAAACTAAAAAA 58
consensus_4773#1      -----AAGATGCCAAGATGTTGTATGAAGATGCAAGTCAAGTGGCTACTGATGCAGTAAG 55
                           * ***  * * ***   *   **  *     * *    **     *   *  ** 

consensus_4773#0      GGATGCTAGCTTTTGGGGTTTGATGTGTGTTGTCCTGGGTATAATTTCAATA-ATATCAA 117
consensus_4773#1      CAGCATCAGGACTGTAGCTTCCTTTTGTTCTGAGAAAAGAGTGATGACAATGTATGATAA 115
                             **   *   * **   * ***  **      *  * **  ****  **   **

consensus_4773#0      TACCGGTGGAGTACTTTATGTTTGGAATAGCTGGA---GGTAAACTTGTAGAGCGTGTCC 174
consensus_4773#1      TAAATGTGAAGC-TTCGAAGAATCAAGGAGTTAGAACAGGAATGGTTGGAGGCCTTGGTT 174
                      **   *** **   *  * *  *  *  ** * **   ** *   *** **  * **   

consensus_4773#0      GTGCCTTGTCATTCCGGA-GTATTATTCACCAAGAAGTTGCTTGGTTTGATGATCCTAGG 233
consensus_4773#1      TTGGTTTCTCATTCTTGATGTTGTACCTAACATATGGTCTCT-GTTTCTATG----TCGG 229
                       **  ** ******  ** **  **   * **    **  ** * **  ***    * **

consensus_4773#0      AATTCCAGTGGAGCGCTTGGTGCAAGATTATCAGTAGG-ATGCTTTTGAA-TGTCCGGCG 291
consensus_4773#1      AGCACAATTCGTACGCCACA-ATAAAACTACTTTTGGGGACGTTTTCAAGGTTTTCTTTG 288
                      *   * * * *  ***       ** * **    * ** * * ***  *  * * *   *

consensus_4773#0      GTTTAG-GTTGGGAGACAATCTTGCATT---GGCAAGTTCAAGGCGTCTCAACACTTATC 347
consensus_4773#1      CACTGGTGTTGGCAACTATTGGAATATCTCAAACAAGTGCGATGGCTTCTGATTCT---- 344
                         * * ***** *   * *     **      ***** * * *  *    *  **    

consensus_4773#0      ACAAGGATTTGTCAAAGGCATGATAGCGGACTGGAAGCTCACTTTGATCATCCTTTTGT- 406
consensus_4773#1      ACAAAG----GCCAAGGATTC---AGCTATCTCCATATTTGCTTTGCTAGACCGCAAGTC 397
                      **** *    * *** *       ***   **  *   *  ***** *   **    ** 

consensus_4773#0      GTGATTCCACTTGTG--GGTCTTCAAGGTTATGCTCAAGTTAAGTTCCTGAAGGGGTTCA 464
consensus_4773#1      ACAAATTGACTCGNGTAGGTTATGAGGGGTAGGGCCATTGGCCACCGGCAAAGGGGAACA 457
                         * *  *** * *  ***  * * ** ** *  **             ******  **

consensus_4773#0      GTGAAGATGCCAAGATGTTGTATGAGGATGCAAGTCA 501
consensus_4773#1      T------------------------------------ 458