cluster # 501

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Oryza sativa
cluster # 501 cluster # 501 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_501#0 length = 1127 sequences # 1

consensus_501#1 length = 506 sequences # 1

consensusID : consensus_501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1127
fasta sequence

                              [CACCCCCGCCGGCCGAGTCCCTCCGCCGTACGTCCGGCCGGCGATGCACCACCGCGACGCGACGGAATCATCACGCGGATCTCCCCTCTTCCCCAACCCAAACCTGACGCTGTGAATTTAATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATACAAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGGATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAGAGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGCTCCACCCTCTCCGGACCAAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGCTCTTTGGGTTTGCTTATGGTGGCCCTTTTGGCCATTTCCTCCATAAAGTGTTAGATTATATCTTCAAAGGGAAGAAGGATACCAAAACTATAGCCAAGAAGGTGTTACTGGAGCAGATCACTTCTTCTCCCTGGAATAATCTGCTCTTCTTGTTCTATTATGGATATGTTGTTGAGAGGAGGCCTTTTAAGGAGGTGAAGACCAGGGTTAAGAAACAATATCCCTCGGTGCAGTTGTCTGCTTGGATGTTTTGGCCAATAGTTGGTTGGATAAATCATATGTACATGCCGTTGCAGTTCCGGGTGATTTTCCACAGCTTTGTTGCATGTTGCTGGGGGATATTTCTTAACCTTCGTGCAAGGGCCATGTCTTTGAAGCAGTCGTAGAGAATTTAGTAGGAAAAAATTGCAGCACCTCTCCAACTTGATTCTTACTGACTAAAGAACAAGGATGCTGAGTGCTACGCAATATGCAGTTAGCAACAAATTGTTACGAGTGGTTTGGGATTTCGAGTATTTATCTGGTGTTTAGTTGGGTTTGTTTGTCAGCAAATGCGAGATTGTTAACAAAGGTATTCTGTTGACACCGGTTATGACTTATGATGAACCCAAAGTATGATTTGATATCTATGGATGAGCTTGGCCTGC]

[+] EMBL AK121976             [CACCCCCGCCGGCCGAGTCCCTCCGCCGTACGTCCGGCCGGCGATGCACCACCGCGACGCGACGGAATCATCACGCGGATCTCCCCTCTTCCCCAACCCAAACCTGACGCTGTGAATTTAATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATACAAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGGATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAGAGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGCTCCACCCTCTCCGGACCAAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGCTCTTTGGGTTTGCTTATGGTGGCCCTTTTGGCCATTTCCTCCATAAAGTGTTAGATTATATCTTCAAAGGGAAGAAGGATACCAAAACTATAGCCAAGAAGGTGTTACTGGAGCAGATCACTTCTTCTCCCTGGAATAATCTGCTCTTCTTGTTCTATTATGGATATGTTGTTGAGAGGAGGCCTTTTAAGGAGGTGAAGACCAGGGTTAAGAAACAATATCCCTCGGTGCAGTTGTCTGCTTGGATGTTTTGGCCAATAGTTGGTTGGATAAATCATATGTACATGCCGTTGCAGTTCCGGGTGATTTTCCACAGCTTTGTTGCATGTTGCTGGGGGATATTTCTTAACCTTCGTGCAAGGGCCATGTCTTTGAAGCAGTCGTAGAGAATTTAGTAGGAAAAAATTGCAGCACCTCTCCAACTTGATTCTTACTGACTAAAGAACAAGGATGCTGAGTGCTACGCAATATGCAGTTAGCAACAAATTGTTACGAGTGGTTTGGGATTTCGAGTATTTATCTGGTGTTTAGTTGGGTTTGTTTGTCAGCAAATGCGAGATTGTTAACAAAGGTATTCTGTTGACACCGGTTATGACTTATGATGAACCCAAAGTATGATTTGATATCTATGGATGAGCTTGGCCTGC]




>consensus_501#0
CACCCCCGCCGGCCGAGTCCCTCCGCCGTACGTCCGGCCGGCGATGCACCACCGCGACGC
GACGGAATCATCACGCGGATCTCCCCTCTTCCCCAACCCAAACCTGACGCTGTGAATTTA
ATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATAC
AAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGG
ATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAG
AGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGC
TCCACCCTCTCCGGACCAAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCG
TGGCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGC
TCTTTGGGTTTGCTTATGGTGGCCCTTTTGGCCATTTCCTCCATAAAGTGTTAGATTATA
TCTTCAAAGGGAAGAAGGATACCAAAACTATAGCCAAGAAGGTGTTACTGGAGCAGATCA
CTTCTTCTCCCTGGAATAATCTGCTCTTCTTGTTCTATTATGGATATGTTGTTGAGAGGA
GGCCTTTTAAGGAGGTGAAGACCAGGGTTAAGAAACAATATCCCTCGGTGCAGTTGTCTG
CTTGGATGTTTTGGCCAATAGTTGGTTGGATAAATCATATGTACATGCCGTTGCAGTTCC
GGGTGATTTTCCACAGCTTTGTTGCATGTTGCTGGGGGATATTTCTTAACCTTCGTGCAA
GGGCCATGTCTTTGAAGCAGTCGTAGAGAATTTAGTAGGAAAAAATTGCAGCACCTCTCC
AACTTGATTCTTACTGACTAAAGAACAAGGATGCTGAGTGCTACGCAATATGCAGTTAGC
AACAAATTGTTACGAGTGGTTTGGGATTTCGAGTATTTATCTGGTGTTTAGTTGGGTTTG
TTTGTCAGCAAATGCGAGATTGTTAACAAAGGTATTCTGTTGACACCGGTTATGACTTAT
GATGAACCCAAAGTATGATTTGATATCTATGGATGAGCTTGGCCTGC

consensusID : consensus_501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [AACCTGACGCTGTGAATTTAATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATACAAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGGATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAGAGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGCTCCACCCTCTCCGGACCAAGGTGCGTTCTTGTTTCGCTCCTCGATTCGATTGGTTTTCTGCGCGCGCGGGATTGTTTGCTCAATTTTTGGGGGATTGCGTGCAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGGTACGGACCTGTGCTTGTGCTAGTTTCCTGCCTTCCTGCGGGG]

[-] EMBL CB000951             [AACCTGACGCTGTGAATTTAATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATACAAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGGATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAGAGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGCTCCACCCTCTCCGGACCAAGGTGCGTTCTTGTTTCGCTCCTCGATTCGATTGGTTTTCTGCGCGCGCGGGATTGTTTGCTCAATTTTTGGGGGATTGCGTGCAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGGTACGGACCTGTGCTTGTGCTAGTTTCCTGCCTTCCTGCGGGG]




>consensus_501#1
AACCTGACGCTGTGAATTTAATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCC
CACCGAGCGGCGGAGCATACAAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCA
GGGTGAGGTAGGCCTGAAGGATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGG
AGGGGTTAGGGGAAGAGGAGAGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCA
GTACCTGCGCCAGCTCCAGCTCCACCCTCTCCGGACCAAGGTGCGTTCTTGTTTCGCTCC
TCGATTCGATTGGTTTTCTGCGCGCGCGGGATTGTTTGCTCAATTTTTGGGGGATTGCGT
GCAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTC
CGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATGGTACGGACCTGTGCTTG
TGCTAGTTTCCTGCCTTCCTGCGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_501#0      CACCCCCGCCGGCCGAGTCCCTCCGCCGTACGTCCGGCCGGCGATGCACCACCGCGACGC 60
consensus_501#1      ------------------------------------------------------------
                                                                                 

consensus_501#0      GACGGAATCATCACGCGGATCTCCCCTCTTCCCCAACCCAAACCTGACGCTGTGAATTTA 120
consensus_501#1      ----------------------------------------AACCTGACGCTGTGAATTTA 20
                                                             ********************

consensus_501#0      ATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATAC 180
consensus_501#1      ATTAATAATAATAAAAAAACAAAGATCTCGCCGCGCTTCCCACCGAGCGGCGGAGCATAC 80
                     ************************************************************

consensus_501#0      AAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGG 240
consensus_501#1      AAAGCAGCAGGAGCAGTTGATTGGGTAGATCGAAGCAGCAGGGTGAGGTAGGCCTGAAGG 140
                     ************************************************************

consensus_501#0      ATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAG 300
consensus_501#1      ATTCCGCCATGGCAGCAGCAGCAGTAGCAGCAGGGAGAGGAGGGGTTAGGGGAAGAGGAG 200
                     ************************************************************

consensus_501#0      AGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGC 360
consensus_501#1      AGGGGGAGGAGGGGTCGCTGGCTCGGCGGGCGTGGCGGCAGTACCTGCGCCAGCTCCAGC 260
                     ************************************************************

consensus_501#0      TCCACCCTCTCCGGACCAAGATGATCACGGCGGGGTGCCTCGCCGGCGTCAGCGACTCCG 420
consensus_501#1      TCCACCCTCTCCGGACCAAGGTG--CGTTCTTGTTTCGCTCCTCGATTCGATTGGTTTTC 318
                     ******************** **  *      *  *  ***  **     *  *  *   

consensus_501#0      TG-GCGCAGAAGCTCTCCGGCTACCAGAGGATCGAGAAGCGCCGCCTCCTGCTCAAGATG 479
consensus_501#1      TGCGCGCGCGGGATTGTTTGCT--CAATTTTTGGGGGATTGCGTGCAGATGATCACGGCG 376
                     ** ****    * *     ***  **     * * * *  **   *   ** *** *  *

consensus_501#0      CTCTTTGGGTTTGCTTATGGTGGCCCTTTTGGCCATTTCCTCCATAAAGTGTTAGATTAT 539
consensus_501#1      ------GGG--TGCCT-CGCCGGCGTCAGCGACTCCGTGGCGCAGAAGCTCTCCGGCTAC 427
                           ***  *** *  *  ***      * *    *    ** **  * *  *  ** 

consensus_501#0      ATCTTCAAAGGGAAGAAGGATACCAAAACTATAGCCAAGAAGGTGTTACTGGAGCAGATC 599
consensus_501#1      -----CAGAGGATCGAGAAGCGCCGCCTCC-TGCTCAAGATGGTA---------CGGACC 472
                          ** ***   **      **    *  *   ***** ***          * ** *

consensus_501#0      ACTTCTTCTCCCTGGAATAATCTGCTCTTCTTGTTCTATTATGGATATGTTGTTGAGAGG 659
consensus_501#1      TGTGCTTGTGCT---AGTTTCCTGC-CTTCCTGCGGGG---------------------- 506
                       * *** * *    * *   **** **** **                           

consensus_501#0      AGGCCTTTTAAGGAGGTGAAGACCAGGGTTAAGAAACAATATCCCTCGGTGCAGTTGTCT 719
consensus_501#1      ------------------------------------------------------------
                                                                                 

consensus_501#0      GCTTGGATGTTTTGGCCAATAGTTGGTTGGATAAATCATATGTACATGCCGTTGCAGTTC 779
consensus_501#1      ------------------------------------------------------------
                                                                                 

consensus_501#0      CGGGTGATTTTCCACAGCTTTGTTGCATGTTGCTGGGGGATATTTCTTAACCTTCGTGCA 839
consensus_501#1      ------------------------------------------------------------
                                                                                 

consensus_501#0      AGGGCCATGTCTTTGAAGCAGTCGTAGAGAATTTAGTAGGAAAAAATTGCAGCACCTCTC 899
consensus_501#1      ------------------------------------------------------------
                                                                                 

consensus_501#0      CAACTTGATTCTTACTGACTAAAGAACAAGGATGCTGAGTGCTACGCAATATGCAGTTAG 959
consensus_501#1      ------------------------------------------------------------
                                                                                 

consensus_501#0      CAACAAATTGTTACGAGTGGTTTGGGATTTCGAGTATTTATCTGGTGTTTAGTTGGGTTT 1019
consensus_501#1      ------------------------------------------------------------
                                                                                 

consensus_501#0      GTTTGTCAGCAAATGCGAGATTGTTAACAAAGGTATTCTGTTGACACCGGTTATGACTTA 1079
consensus_501#1      ------------------------------------------------------------
                                                                                 

consensus_501#0      TGATGAACCCAAAGTATGATTTGATATCTATGGATGAGCTTGGCCTGC 1127
consensus_501#1      ------------------------------------------------