cluster # 5033

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Oryza sativa
cluster # 5033 cluster # 5033 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5033#0 length = 900 sequences # 1

consensus_5033#1 length = 440 sequences # 1
consensus_5033#2 length = 387 sequences # 1

consensusID : consensus_5033#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 900
fasta sequence

                              [CAGCCACGCCATTCTGTCGCCTCCTCCACTTCTTCTCCTTCGCCATGGCTGTGCAGGCGCAGTATGGGGGTGGGATGGCGGCGGGGATGTGCTTGCCAGACCATGAGGTGGAGGCGCAGATGCGGGAGCTCGGCGCGATGTTCTCGGCGGCAGGTGGTGGTTGCTACAACGGCGGCGGTGGCGGCGGAGGGTATGACTGCGCCGCCGTGGTGAGCGGCGCGGCGCAGAGCGAGCTGACGTGCAACAACGGTGGTGTTTGTGGTGGTGCGGTGGGGATGGGGGTGGGGGCGGGGAGGAAGCGGGAGAGGGAGGTGGTGGAGCAGTATGCGGCGGTGGCGTCGTCCGCGGCGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCGGCGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCGGCGGCGGTGGGGGATGCGCTGGTGTCGGAGCTGTGCGCGCAGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCCCAAGCTGGACGCTTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATTAGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAAAAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTT]

[+] EMBL AK108274             [CAGCCACGCCATTCTGTCGCCTCCTCCACTTCTTCTCCTTCGCCATGGCTGTGCAGGCGCAGTATGGGGGTGGGATGGCGGCGGGGATGTGCTTGCCAGACCATGAGGTGGAGGCGCAGATGCGGGAGCTCGGCGCGATGTTCTCGGCGGCAGGTGGTGGTTGCTACAACGGCGGCGGTGGCGGCGGAGGGTATGACTGCGCCGCCGTGGTGAGCGGCGCGGCGCAGAGCGAGCTGACGTGCAACAACGGTGGTGTTTGTGGTGGTGCGGTGGGGATGGGGGTGGGGGCGGGGAGGAAGCGGGAGAGGGAGGTGGTGGAGCAGTATGCGGCGGTGGCGTCGTCCGCGGCGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCGGCGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCGGCGGCGGTGGGGGATGCGCTGGTGTCGGAGCTGTGCGCGCAGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCCCAAGCTGGACGCTTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATTAGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAAAAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTT]




>consensus_5033#0
CAGCCACGCCATTCTGTCGCCTCCTCCACTTCTTCTCCTTCGCCATGGCTGTGCAGGCGC
AGTATGGGGGTGGGATGGCGGCGGGGATGTGCTTGCCAGACCATGAGGTGGAGGCGCAGA
TGCGGGAGCTCGGCGCGATGTTCTCGGCGGCAGGTGGTGGTTGCTACAACGGCGGCGGTG
GCGGCGGAGGGTATGACTGCGCCGCCGTGGTGAGCGGCGCGGCGCAGAGCGAGCTGACGT
GCAACAACGGTGGTGTTTGTGGTGGTGCGGTGGGGATGGGGGTGGGGGCGGGGAGGAAGC
GGGAGAGGGAGGTGGTGGAGCAGTATGCGGCGGTGGCGTCGTCCGCGGCGCTGCTGCCGA
TCCCCGGGATGATGAAGGTGGCGGCGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGT
CGACGAGTGGGAGGTCAGCGGCGGCGGTGGGGGATGCGCTGGTGTCGGAGCTGTGCGCGC
AGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCCCAAGCTGGACGCTTGCC
CCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCG
TCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATT
AGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAA
AAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATT
ACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTA
CAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTT

consensusID : consensus_5033#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [GCTGCTCCTCCCATGCCGCCACCTCTGCCTCTGCAAGGCGTGCGAGCCCAAGCTGGACGCTTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATTAGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAAAAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTTTTACCAAACAAAAAA]

[+] EMBL AU166783             [GCTGCTCCTCCCATGCCGCCACCTCTGCCTCTGCAAGGCGTGCGAGCCCAAGCTGGACGCTTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATTAGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAAAAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTTTTACCAAACAAAAAA]




>consensus_5033#1
GCTGCTCCTCCCATGCCGCCACCTCTGCCTCTGCAAGGCGTGCGAGCCCAAGCTGGACGC
TTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAA
CACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACAT
AGATTAGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGG
TAAAAAAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTA
AAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAA
GCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCC
TTTTTTTACCAAACAAAAAA

consensusID : consensus_5033#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [TCGTCCGCGGCGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCAGGCAGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCAGGCAGGCGGTGGGGGATGCGCTGGTGTCGTGAGCTGTGCGCGCAGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCGGATGCGCGCCGGGCTGGAGCAGGCGCGGAAGCGGCAGTGCCAGGCGGTGGTGCGCGCGGCGTCGGCCGCCGCGGCGCGGCGGCTGCGGGAGAAGGAGGCCGAGCTCGACGCCGCACGGCGCCGCGCGGCCGAGCTGGAGGAGCGGCTCCGCCAGGTCGCCGNCGAGAGCCAGGCGTGGTGCGGCTCCCCGCANCAAC]

[+] EMBL AU166782             [TCGTCCGCGGCGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCAGGCAGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCAGGCAGGCGGTGGGGGATGCGCTGGTGTCGTGAGCTGTGCGCGCAGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCGGATGCGCGCCGGGCTGGAGCAGGCGCGGAAGCGGCAGTGCCAGGCGGTGGTGCGCGCGGCGTCGGCCGCCGCGGCGCGGCGGCTGCGGGAGAAGGAGGCCGAGCTCGACGCCGCACGGCGCCGCGCGGCCGAGCTGGAGGAGCGGCTCCGCCAGGTCGCCGNCGAGAGCCAGGCGTGGTGCGGCTCCCCGCANCAAC]




>consensus_5033#2
TCGTCCGCGGCGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCAGGCAGCCGGTGAGCC
GGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCAGGCAGGCGGTGGGGGA
TGCGCTGGTGTCGTGAGCTGTGCGCGCAGAGCGCGGAGATCGACGCGGTGGTGCGGATGG
AGTGCGAGCGGATGCGCGCCGGGCTGGAGCAGGCGCGGAAGCGGCAGTGCCAGGCGGTGG
TGCGCGCGGCGTCGGCCGCCGCGGCGCGGCGGCTGCGGGAGAAGGAGGCCGAGCTCGACG
CCGCACGGCGCCGCGCGGCCGAGCTGGAGGAGCGGCTCCGCCAGGTCGCCGNCGAGAGCC
AGGCGTGGTGCGGCTCCCCGCANCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5033#0      CAGCCACGCCATTCTGTCGCCTCCTCCACTTCTTCTCCTTCGCCATGGCTGTGCAGGCGC 60
consensus_5033#1      ------------------------------------------------------------
consensus_5033#2      ------------------------------------------------------------
                                                                                  

consensus_5033#0      AGTATGGGGGTGGGATGGCGGCGGGGATGTGCTTGCCAGACCATGAGGTGGAGGCGCAGA 120
consensus_5033#1      ------------------------------------------------------------
consensus_5033#2      ------------------------------------------------------------
                                                                                  

consensus_5033#0      TGCGGGAGCTCGGCGCGATGTTCTCGGCGGCAGGTGGTGGTTGCTACAACGGCGGCGGTG 180
consensus_5033#1      ------------------------------------------------------------
consensus_5033#2      ------------------------------------------------------------
                                                                                  

consensus_5033#0      GCGGCGGAGGGTATGACTGCGCCGCCGTGGTGAGCGGCGCGGCGCAGAGCGAGCTGACGT 240
consensus_5033#1      ------------------------------------------------------------
consensus_5033#2      ------------------------------------------------------------
                                                                                  

consensus_5033#0      GCAACAACGGTGGTGTTTGTGGTGGTGCGGTGGGGATGGGGGTGGGGGCGGGGAGGAAGC 300
consensus_5033#1      ------------------------------------------------------------
consensus_5033#2      ------------------------------------------------------------
                                                                                  

consensus_5033#0      GGGAGAGGGAGGTGGTGGAGCAGTATGCGGCGGTGGCGTCGTCCGCGGCGCTGCTGCCGA 360
consensus_5033#1      ------------------------------------------------------------
consensus_5033#2      ------------------------------------------------------------
                                                                                  

consensus_5033#0      TCCCCGGGATGATGAAGGTGGCGGCGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGT 420
consensus_5033#1      ------------------------------------------------------------
consensus_5033#2      ------------------------------------------------------------
                                                                                  

consensus_5033#0      CGACGAGTGGGAGGTCAGCGGCGGCGGTGGGGGATGCGCTGGTGTCGGAGCTGTGCGCGC 480
consensus_5033#1      -------------------------------------------------GCTGCTCCTCC 11
consensus_5033#2      ------------------------------------------------------TCGTCC 6
                                                                             *   *

consensus_5033#0      AGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCCCAAGCTGGACGCTTGCC 540
consensus_5033#1      C--ATGCCGCCACCTCTGCC----TCTGCAAGGCGTGCGAGCCCAAGCTGGACGCTTGCC 65
consensus_5033#2      GCGGCGCTGCTGCCGATCCC-----CGGGATGATGAAGGTGGC--AGGCAGCCGGTGAGC 59
                           ** *    *    *        * * *  *   * * *  **   * ** *   *

consensus_5033#0      CCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCG 600
consensus_5033#1      CCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCG 125
consensus_5033#2      CGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCAGGCAGGCGGTGGGGG 119
                      * **  *    * **   *  *** *  **        * ** **      **      *

consensus_5033#0      TCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATT 660
consensus_5033#1      TCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATT 185
consensus_5033#2      ATGCGCTGGT-GTCGTGAGCTGTGC--GCGCAGAGCGCGGAGATCGACGCGGTGGTGCGG 176
                           **  * * * *       **   * *     * * *  *   *  *     *   

consensus_5033#0      AGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAA 720
consensus_5033#1      AGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAA 245
consensus_5033#2      ATGGAGTGCGAGCGGATGCGC--GCCGGGCTGGAGCAGGCGCGGAAGCGGCAGTGCC--- 231
                      * * ** * **   * **       *  * * *    *       **    ** *     

consensus_5033#0      AAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATT 780
consensus_5033#1      AAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATT 305
consensus_5033#2      -AGGCGGTGGTGCGCGCGGCGTCGGCCGCCGCGGCGCG------GCGGCTGCGGGAGAAG 284
                       *   * **    *       **    * **    * *       *  **  *  * *  

consensus_5033#0      ACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTA 840
consensus_5033#1      ACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTA 365
consensus_5033#2      GAGGCCGAGCTCGACGCCGCACGGCGCCGCG---CGGCCGAGCTGGAGGAGCGGCTCCGC 341
                         **  **    *     *** * * *       ****   * **   **     *   

consensus_5033#0      CAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTT 900
consensus_5033#1      CAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTT 425
consensus_5033#2      CAGGTCGCCGNCGAG--AGCCAGGCGT------GGTGCGGCTCCCCGCANCAAC------ 387
                      ** ** *      *   ** ***** *      *       *    ***    *      

consensus_5033#0      ---------------
consensus_5033#1      TTACCAAACAAAAAA 440
consensus_5033#2      ---------------