cluster # 5188

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Oryza sativa
cluster # 5188 cluster # 5188 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5188#0 length = 612 sequences # 1

consensus_5188#1 length = 465 sequences # 1
consensus_5188#2 length = 341 sequences # 1

consensusID : consensus_5188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [GTTGGGAGCTATGTCACCAACTTGTTCCAAGACAGGCAAATTTTAGTGGCATCGGAAATCATGGTCCTGATCGGCATAGCCATGAGCTTCCGTTTCACCTCTCACTACTCCGTCCCGCAATACGTCTCCTCGGCTCTCATCACGTTCGTCTTCGCTGAGGTGCTCGAAGGAGTGAACCTGTCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTCCTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCGGGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGCGTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTACTGATCAAAAAAA]

[+] EMBL AU030644             [GTTGGGAGCTATGTCACCAACTTGTTCCAAGACAGGCAAATTTTAGTGGCATCGGAAATCATGGTCCTGATCGGCATAGCCATGAGCTTCCGTTTCACCTCTCACTACTCCGTCCCGCAATACGTCTCCTCGGCTCTCATCACGTTCGTCTTCGCTGAGGTGCTCGAAGGAGTGAACCTGTCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTCCTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCGGGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGCGTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTACTGATCAAAAAAA]




>consensus_5188#0
GTTGGGAGCTATGTCACCAACTTGTTCCAAGACAGGCAAATTTTAGTGGCATCGGAAATC
ATGGTCCTGATCGGCATAGCCATGAGCTTCCGTTTCACCTCTCACTACTCCGTCCCGCAA
TACGTCTCCTCGGCTCTCATCACGTTCGTCTTCGCTGAGGTGCTCGAAGGAGTGAACCTG
TCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTC
CTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCG
GGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGC
GTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTC
TCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAA
ATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTAT
GTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTAC
TGATCAAAAAAA

consensusID : consensus_5188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [GACCCTGTGAACAAAACGATGCAGGAGTGAACCTGTCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTCCTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCGGGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGCGTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTACTGATCAAAAA]

[-] EMBL CF315760             [GACCCTGTGAACAAAACGATGCAGGAGTGAACCTGTCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTCCTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCGGGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGCGTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTACTGATCAAAAA]




>consensus_5188#1
GACCCTGTGAACAAAACGATGCAGGAGTGAACCTGTCCCTCCTTTCCCGGGTGATGTCGT
CGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTCCTCTCGACGGAAGCCGGCACTTTGG
CTCGCGTCGCGGCGGACATGACGATCACGGCGGCGGGTTACCTTGGCCAGAACAGCCTCC
TGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGCGTAGCTTCCATCGTCGCGACATTTT
GCACCTATAACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGT
TGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCT
GGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTAGCAGTTACTAAGTTA
ACAGATGATGTAAGAGCATGTTCAATAAACTCTACTGATCAAAAA

consensusID : consensus_5188#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [CGAGCCGTGCCNAATTCGGCACGAGCACNNTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTANGTTATGTTTGTAGTAACAGTTACTAAGTTAACAGATGATGTAAGACATGTTCAATAAANTCTACTGATCAAATGCTCCAAAAGCCTCTTGGACAATCCTGCTTGCACCGGACCAGCNANTTCCAGGGCAACGGCAAGANCATAAAAAAAATGTNTGCTCAGCGGNCAANCAAAAGTTAATTGGTGCGGATCAAANTGAAATGAGGTGATCACCGGTGGTTTTTGCCGTT]

[+] EMBL BE228801             [CGAGCCGTGCCNAATTCGGCACGAGCACNNTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTANGTTATGTTTGTAGTAACAGTTACTAAGTTAACAGATGATGTAAGACATGTTCAATAAANTCTACTGATCAAATGCTCCAAAAGCCTCTTGGACAATCCTGCTTGCACCGGACCAGCNANTTCCAGGGCAACGGCAAGANCATAAAAAAAATGTNTGCTCAGCGGNCAANCAAAAGTTAATTGGTGCGGATCAAANTGAAATGAGGTGATCACCGGTGGTTTTTGCCGTT]




>consensus_5188#2
CGAGCCGTGCCNAATTCGGCACGAGCACNNTTCCTGGCCACTTGGGTGGCCTGTAAAATG
TTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTANGTTATGTT
TGTAGTAACAGTTACTAAGTTAACAGATGATGTAAGACATGTTCAATAAANTCTACTGAT
CAAATGCTCCAAAAGCCTCTTGGACAATCCTGCTTGCACCGGACCAGCNANTTCCAGGGC
AACGGCAAGANCATAAAAAAAATGTNTGCTCAGCGGNCAANCAAAAGTTAATTGGTGCGG
ATCAAANTGAAATGAGGTGATCACCGGTGGTTTTTGCCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5188#0      GTTGGGAGCTATGTCACCAACTTGTTCCAAGACAGGCAAATTTTAGTGGCATCGGAAATC 60
consensus_5188#1      ------------------------------------------------------------
consensus_5188#2      ------------------------------------------------------------
                                                                                  

consensus_5188#0      ATGGTCCTGATCGGCATAGCCATGAGCTTCCGTTTCACCTCTCACTACTCCGTCCCGCAA 120
consensus_5188#1      ------------------------------------------------------------
consensus_5188#2      ------------------------------------------------------------
                                                                                  

consensus_5188#0      TACGTCTCCTCGGCTCTCATCACGTTCGTCTTCGCTGAGGTGCTCGAAGGAGTGAACCTG 180
consensus_5188#1      -----------------------GACCCTGTGAAC-AAAACGAT-GCAGGAGTGAACCTG 35
consensus_5188#2      ----------------------------------------------------CGAGCCGT 8
                                                                           ** **  

consensus_5188#0      TCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTC 240
consensus_5188#1      TCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTC 95
consensus_5188#2      GCCNAATTCGGCACGAGCACNNTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCG 68
                       **    *   *  *   *      *  * * ** * * **    ** ** *   ***  

consensus_5188#0      CTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCG 300
consensus_5188#1      CTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCG 155
consensus_5188#2      ATG-CAGCTAATGCTGGT-CTCTAATTGTCATC-TGTGGAAGATTANG-TTATGTTTGTA 124
                       *  *  *  * ** **  ** *   *  * **  *  * * ** * * * * *   *  

consensus_5188#0      GGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGC 360
consensus_5188#1      GGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGC 215
consensus_5188#2      G-TAACAGTTACTAAGTTAACAGAT--GATGTAAGACA-----TGTTCAATAAANTCTAC 176
                      * * **  *  * *    * *       ******  *       ** *       *** *

consensus_5188#0      GTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTC 420
consensus_5188#1      GTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTC 275
consensus_5188#2      TGATCAAATGCTCCAAAAGCCTCTTGGAC--AATCCTGCTTGCACCGG--ACCAGCNANT 232
                        * *              * * *** **  *   ** * ** ** *   * * *     

consensus_5188#0      TCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAA 480
consensus_5188#1      TCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAA 335
consensus_5188#2      TCCAGG-GCAACGGCAAGANC--ATAAAAAAAATGTNTGCTCA-----GCGGNCAANCAA 284
                      ***    * *    *****     *  * * * *   **  **     * ** *    **

consensus_5188#0      ATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTAT 540
consensus_5188#1      ATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTAT 395
consensus_5188#2      AAGTTAA-TTGGTGCGGATCAAANTGAAATGAGGTGATCACCGGTGGTTTTTGCCGTT-- 341
                      * ****    * *** * * *   **   *    *  *** * ****    *   ***  

consensus_5188#0      GTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTAC 600
consensus_5188#1      GTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTAC 455
consensus_5188#2      ------------------------------------------------------------
                                                                                  

consensus_5188#0      TGATCAAAAAAA 612
consensus_5188#1      TGATCAAAAA-- 465
consensus_5188#2      ------------