cluster # 5199

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Oryza sativa
cluster # 5199 cluster # 5199 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5199#0 length = 419 sequences # 2

consensus_5199#1 length = 142 sequences # 1

consensusID : consensus_5199#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 419
fasta sequence

                              [TTGGTAGCTCCCGGGCGCCCATTGCGTGCGGCGGCGGCGTGGCGGCGAAGCGGAGCGCGACGCTGGCGACCAGAGCGCCGGAGCCCGCAACATCGAGCCGGAGTGGAGCGCCATCGCCGCGCGTTGCAGGCATGCCGTCCGACTGTCCGAGTGCTTGACTCCTGCGACCAGCTCCTCAATCTCGAGCAAAGCTTGACTCCTGCGGCCAGCTCCTCAACC-CGAGCAAAGCTACTAGTATACTGCTAATTGGCTGGCTGCTGCTTTGCTTGTGAGTTGGTTGTTGTGTATTTGTCATACATAGGACTTAACTACATTAGTACTTGTGTTTATGTGTATTTGGGCATCCGGCTCCCTAGAATGCATATTACTACTAATTGTGCATTTGTGATATATTGATTACTGACTGGAGTAGTGGAGTA]

[+] EMBL CF338371             [TTGGTAGCTCCCGGGCGCCCATTGCGTGCGGCGGCGGCGTGGCGGCGAAGCGGAGCGCGACGCTGGCGACCAGAGCGCCGGAGCCCGCAACATCGAGCCGGAGTGGAGCGCCATCGCCGCGCGTTGCAGGCATGCCGTCCGACTGTCCGAGTGCTTGACTCCTGCGACCAGCTCCTCAATCTCGAGCAAAGCTTGACTCCTGCGGCCAGCTCCTCAACC CGAGCAAAGCTACTAGTATACTGCTAATTGGCTGGCTGCTGCTTTGCTTGTGAGTTGGTTGTTGTGTATTTGTCATACATAGGACTTAACTACATTAGTACTTGTGTTTATGTGTATTTGG                                                                               ]
[+] EMBL CB683201             [                                                     AGCGCCTTGCTGGCGACCAGAGCGTCGGAGCCCGCAACATCGAGCCGGAGTGGAGCGCCATCGCCGCGCGTTGCAGCCCTGCCGTCCGACTGTCCGAGTGCTTGACTCCTGCGACCAGCTCCTCAATCTCGAGCAAAGCTTGACTCCTGCGGCCAGCTCCTCAACCTCGAGCAAAGCTACTAGTATACTGCTAATTGGCTGGCTGCTGCTTTGCTTGTGAGTTGGTTGTTGTGTATTTGTCATACATAGGACTTAACTACATTAGTACTTGTGTTTATGTGTATTTGGGCATCCGGCTCCCTAGAATGCATATTACTACTAATTGTGCATTTGTGATATATTGATTACTGACTGGAGTAGTGGAGTA]




>consensus_5199#0
TTGGTAGCTCCCGGGCGCCCATTGCGTGCGGCGGCGGCGTGGCGGCGAAGCGGAGCGCGA
CGCTGGCGACCAGAGCGCCGGAGCCCGCAACATCGAGCCGGAGTGGAGCGCCATCGCCGC
GCGTTGCAGGCATGCCGTCCGACTGTCCGAGTGCTTGACTCCTGCGACCAGCTCCTCAAT
CTCGAGCAAAGCTTGACTCCTGCGGCCAGCTCCTCAACCCGAGCAAAGCTACTAGTATAC
TGCTAATTGGCTGGCTGCTGCTTTGCTTGTGAGTTGGTTGTTGTGTATTTGTCATACATA
GGACTTAACTACATTAGTACTTGTGTTTATGTGTATTTGGGCATCCGGCTCCCTAGAATG
CATATTACTACTAATTGTGCATTTGTGATATATTGATTACTGACTGGAGTAGTGGAGTA

consensusID : consensus_5199#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 142
fasta sequence

                              [ATTTGGGCATCCGGCTCCCTAGAATGCATATTACTACTAATTGTGCATTTGTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTCCCG]

[+] EMBL CF308850             [ATTTGGGCATCCGGCTCCCTAGAATGCATATTACTACTAATTGTGCATTTGTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTCCCG]




>consensus_5199#1
ATTTGGGCATCCGGCTCCCTAGAATGCATATTACTACTAATTGTGCATTTGTGATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAACCCCTGTCTTCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5199#0      TTGGTAGCTCCCGGGCGCCCATTGCGTGCGGCGGCGGCGTGGCGGCGAAGCGGAGCGCGA 60
consensus_5199#1      ------------------------------------------------------------
                                                                                  

consensus_5199#0      CGCTGGCGACCAGAGCGCCGGAGCCCGCAACATCGAGCCGGAGTGGAGCGCCATCGCCGC 120
consensus_5199#1      ------------------------------------------------------------
                                                                                  

consensus_5199#0      GCGTTGCAGGCATGCCGTCCGACTGTCCGAGTGCTTGACTCCTGCGACCAGCTCCTCAAT 180
consensus_5199#1      ------------------------------------------------------------
                                                                                  

consensus_5199#0      CTCGAGCAAAGCTTGACTCCTGCGGCCAGCTCCTCAACCCGAGCAAAGCTACTAGTATAC 240
consensus_5199#1      ------------------------------------------------------------
                                                                                  

consensus_5199#0      TGCTAATTGGCTGGCTGCTGCTTTGCTTGTGAGTTGGTTGTTGTGTATTTGTCATACATA 300
consensus_5199#1      ------------------------------------------------------------
                                                                                  

consensus_5199#0      GGACTTAACTACATTAGTACTTGTGTTTATGTGTATTTGGGCATCCGGCTCCCTAGAATG 360
consensus_5199#1      ----------------------------------ATTTGGGCATCCGGCTCCCTAGAATG 26
                                                        **************************

consensus_5199#0      CATATTACTACTAATTGTGCATTTGTGATATATTGATTACTGACTGGAGTAGTGGAGTA- 419
consensus_5199#1      CATATTACTACTAATTGTGCATTTGTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 86
                      ****************************** *   *  *   *    *  *    *  * 

consensus_5199#0      --------------------------------------------------------
consensus_5199#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTCCCG 142