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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1015 fasta sequence
[GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTGCTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGATAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAGCTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTCATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTA-AAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTC-TTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGG-CCTTGCATACTCTGCTTTCTGCGCAGCATCCT-GCTCATCGTTCCAATCGGATTC-TCCATT-GCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAAT-GCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAG-CATGT-GATATATCAATG-CAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCCCTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTCGAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA]
[+] EMBL AK062800 [GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTGCTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGATAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAGCTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTCATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTA AAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTC TTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGG CCTTGCATACTCTGCTTTCTGCGCAGCATCCT GCTCATCGTTCCAATCGGATTC TCCATT GCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAAT GCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAG CATGT GATATATCAATG CAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCCCTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTCGAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA]
[+] EMBL BM421084 [ ccgAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAGAAATCATCNAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCGTTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCCTTGCATACTCTGCTTTCTGCGCAGCATCCTGGCTCATCGTTCC ATCGGATTCGTCCATTGGCTGCTTGAAATGGAC ATGGTTATACTTGACTGATTAAATGGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCCATGTGGATATATCAATGNCAATTTTCAGTTAGAAGTCTNGCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCNGATAAATATAGATTTTTTNCCCTCTA ]
consensusID : consensus_5252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[TCGCGGCACGAGGCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTTTTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATAGATTTT]
[-] EMBL CB635938 [TCGCGGCACGAGGCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTTTTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATAGATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5252#0 GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTG 60
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 CTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGA 120
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 TAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAG 180
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 CTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTC 240
consensus_5252#1 -------------------------------------------TCGCGGCACGAGG---- 13
* * * * *
consensus_5252#0 ATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATAC 300
consensus_5252#1 --CTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATAC 71
**********************************************************
consensus_5252#0 TAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCAT 360
consensus_5252#1 TAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCAT 131
************************************************************
consensus_5252#0 TTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGG 420
consensus_5252#1 TTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGG 191
************************************************************
consensus_5252#0 TATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTC 480
consensus_5252#1 TATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTC 251
************************************************************
consensus_5252#0 TCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATAC 540
consensus_5252#1 TCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATAC 311
************************************************************
consensus_5252#0 TAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCAT 600
consensus_5252#1 TAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCAT 371
************************************************************
consensus_5252#0 ACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTT 660
consensus_5252#1 ACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTT 431
************************************************************
consensus_5252#0 TCTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACA 720
consensus_5252#1 TTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACA 491
* **********************************************************
consensus_5252#0 ATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGAT 780
consensus_5252#1 ATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGAT 551
************************************************************
consensus_5252#0 TGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTG 840
consensus_5252#1 TGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTCCTTTCTTTTTG 611
******************************************* ****************
consensus_5252#0 CACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCC 900
consensus_5252#1 CACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATAGATTTT----- 666
*********************************** *****************
consensus_5252#0 CTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTC 960
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 GAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA 1015
consensus_5252#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||