cluster # 560

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 560 cluster # 560 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_560#0 length = 720 sequences # 1

consensus_560#1 length = 571 sequences # 1

consensusID : consensus_560#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 720
fasta sequence

                              [ATCATATTGTAAAATCATGACGTCCTTAGGCTCAAAAGATTTGTCTCACAATTTACATGCAAACTGTGCAATTGATTTTTTTCGTTCATATTTAATGCTCTATACATATGTCCAAACATTTAATGTGACGGAATTTTTAGAAGTTTGAAGGGAACTTAAATACTGCCTAAATCAATAAGAACAATGGTGTTACAATAAAAAATAATAGGTATACAGTGACTAGACTAGAGGGCAATTGGGATTTGGGATTGCTTCATTTATGATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAATGAGTAAAACCCCACAGCTCAACATTCTTCAGTTCAAAATCTGGACTATGAGCCAAGCATGAGTTCCCAAATGTCTGACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCACAACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTACCTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGTGAATACAAATGTCTGATTAGTTCCCTGGTATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAGCCACCAAACACAGCCCCCCGCATGTCTCCAACAATCAATAGGCATGGACCCTGGAGATTTTCACTCCTACGGAAAAGTGTTCTTAGCGATGTTCCATGCTTCCAAGTGCTGCACTATATA]

[+] EMBL CB629874             [ATCATATTGTAAAATCATGACGTCCTTAGGCTCAAAAGATTTGTCTCACAATTTACATGCAAACTGTGCAATTGATTTTTTTCGTTCATATTTAATGCTCTATACATATGTCCAAACATTTAATGTGACGGAATTTTTAGAAGTTTGAAGGGAACTTAAATACTGCCTAAATCAATAAGAACAATGGTGTTACAATAAAAAATAATAGGTATACAGTGACTAGACTAGAGGGCAATTGGGATTTGGGATTGCTTCATTTATGATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAATGAGTAAAACCCCACAGCTCAACATTCTTCAGTTCAAAATCTGGACTATGAGCCAAGCATGAGTTCCCAAATGTCTGACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCACAACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTACCTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGTGAATACAAATGTCTGATTAGTTCCCTGGTATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAGCCACCAAACACAGCCCCCCGCATGTCTCCAACAATCAATAGGCATGGACCCTGGAGATTTTCACTCCTACGGAAAAGTGTTCTTAGCGATGTTCCATGCTTCCAAGTGCTGCACTATATA]




>consensus_560#0
ATCATATTGTAAAATCATGACGTCCTTAGGCTCAAAAGATTTGTCTCACAATTTACATGC
AAACTGTGCAATTGATTTTTTTCGTTCATATTTAATGCTCTATACATATGTCCAAACATT
TAATGTGACGGAATTTTTAGAAGTTTGAAGGGAACTTAAATACTGCCTAAATCAATAAGA
ACAATGGTGTTACAATAAAAAATAATAGGTATACAGTGACTAGACTAGAGGGCAATTGGG
ATTTGGGATTGCTTCATTTATGATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAA
TGAGTAAAACCCCACAGCTCAACATTCTTCAGTTCAAAATCTGGACTATGAGCCAAGCAT
GAGTTCCCAAATGTCTGACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCAC
AACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTAC
CTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGTGAATACAAAT
GTCTGATTAGTTCCCTGGTATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAG
CCACCAAACACAGCCCCCCGCATGTCTCCAACAATCAATAGGCATGGACCCTGGAGATTT
TCACTCCTACGGAAAAGTGTTCTTAGCGATGTTCCATGCTTCCAAGTGCTGCACTATATA

consensusID : consensus_560#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTCATATTTAAGGCTCTATACATATGCCCAAACATTTAAGGGGACGGAATTTTTAAAAGTTTGAAGGGAACTTGAATACTGCCTAAATCAATAAAAACAAGGGTGTTCCAATAAAAAATAATAGGTATCCGGGGACTAAACTAGAGGGCAATTGGGATTTGGGATTGCTTCATTTATAATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAATGAGTAAAACCCCACAGCTCAACATTTTTCAGTTCAAAATCTGGACTATAACCCAAGCATGAGTTCCCAAATGTCTAACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCACAACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTACCTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGGGAATACAAAGGTCTAATTAGTTCCCTGGAATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAGCCACCAAACACAGCCCCCCTTGTCT]

[+] EMBL CA759460             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTCATATTTAAGGCTCTATACATATGCCCAAACATTTAAGGGGACGGAATTTTTAAAAGTTTGAAGGGAACTTGAATACTGCCTAAATCAATAAAAACAAGGGTGTTCCAATAAAAAATAATAGGTATCCGGGGACTAAACTAGAGGGCAATTGGGATTTGGGATTGCTTCATTTATAATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAATGAGTAAAACCCCACAGCTCAACATTTTTCAGTTCAAAATCTGGACTATAACCCAAGCATGAGTTCCCAAATGTCTAACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCACAACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTACCTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGGGAATACAAAGGTCTAATTAGTTCCCTGGAATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAGCCACCAAACACAGCCCCCCTTGTCT]




>consensus_560#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTCATATTTAAGGCTCTATACATATGCCCA
AACATTTAAGGGGACGGAATTTTTAAAAGTTTGAAGGGAACTTGAATACTGCCTAAATCA
ATAAAAACAAGGGTGTTCCAATAAAAAATAATAGGTATCCGGGGACTAAACTAGAGGGCA
ATTGGGATTTGGGATTGCTTCATTTATAATGTATCCAAGGCCAACTATGTTGAACGACCC
CATGAATGAGTAAAACCCCACAGCTCAACATTTTTCAGTTCAAAATCTGGACTATAACCC
AAGCATGAGTTCCCAAATGTCTAACATGATCCACTGGTTCCATGTAACAAATCTTCATCG
AGGCACAACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAG
TAGTACCTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGGGAAT
ACAAAGGTCTAATTAGTTCCCTGGAATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTT
AACAAGCCACCAAACACAGCCCCCCTTGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_560#0      ATCATATTGTAAAATCATGACGTCCTTAGGCTCAAAAGATTTGTCTCACAATTTACATGC 60
consensus_560#1      ---------------------------------------------------TTTTTTTTT 9
                                                                        ***   *  

consensus_560#0      AAACTGTGCAATTGATTTTTTTCGTTCATATTTAATGCTCTATACATATGTCCAAACATT 120
consensus_560#1      ---TTTTTTTTTTTTTTTTTTTCGTTCATATTTAAGGCTCTATACATATGCCCAAACATT 66
                         * *    **  ******************** ************** *********

consensus_560#0      TAATGTGACGGAATTTTTAGAAGTTTGAAGGGAACTTAAATACTGCCTAAATCAATAAGA 180
consensus_560#1      TAAGGGGACGGAATTTTTAAAAGTTTGAAGGGAACTTGAATACTGCCTAAATCAATAAAA 126
                     *** * ************* ***************** ******************** *

consensus_560#0      ACAATGGTGTTACAATAAAAAATAATAGGTATACAGTGACTAGACTAGAGGGCAATTGGG 240
consensus_560#1      ACAAGGGTGTTCCAATAAAAAATAATAGGTATCCGGGGACTAAACTAGAGGGCAATTGGG 186
                     **** ****** ******************** * * ***** *****************

consensus_560#0      ATTTGGGATTGCTTCATTTATGATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAA 300
consensus_560#1      ATTTGGGATTGCTTCATTTATAATGTATCCAAGGCCAACTATGTTGAACGACCCCATGAA 246
                     ********************* **************************************

consensus_560#0      TGAGTAAAACCCCACAGCTCAACATTCTTCAGTTCAAAATCTGGACTATGAGCCAAGCAT 360
consensus_560#1      TGAGTAAAACCCCACAGCTCAACATTTTTCAGTTCAAAATCTGGACTATAACCCAAGCAT 306
                     ************************** ********************** * ********

consensus_560#0      GAGTTCCCAAATGTCTGACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCAC 420
consensus_560#1      GAGTTCCCAAATGTCTAACATGATCCACTGGTTCCATGTAACAAATCTTCATCGAGGCAC 366
                     **************** *******************************************

consensus_560#0      AACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTAC 480
consensus_560#1      AACGCGAAACTCCCACCTCCTCCAAATGCCAAAGCATCATTCAAGCATAAGTAGTAGTAC 426
                     ************************************************************

consensus_560#0      CTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGTGAATACAAAT 540
consensus_560#1      CTGTTGGCACCGGTTGGTCTGAAAAGCCTAGGTTCACCATAAATCGTTGGGAATACAAAG 486
                     ************************************************* ********* 

consensus_560#0      GTCTGATTAGTTCCCTGGTATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAG 600
consensus_560#1      GTCTAATTAGTTCCCTGGAATTTTCTTTTCTCTGTAGGCCTGAGAGGACCATTTAACAAG 546
                     **** ************* *****************************************

consensus_560#0      CCACCAAACACAGCCCCCCGCATGTCTCCAACAATCAATAGGCATGGACCCTGGAGATTT 660
consensus_560#1      CCACCAAACACAGCCCCCCTTGTCT----------------------------------- 571
                     *******************   * *                                   

consensus_560#0      TCACTCCTACGGAAAAGTGTTCTTAGCGATGTTCCATGCTTCCAAGTGCTGCACTATATA 720
consensus_560#1      ------------------------------------------------------------