cluster # 5656

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Oryza sativa
cluster # 5656 cluster # 5656 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5656#0 length = 535 sequences # 2

consensus_5656#1 length = 494 sequences # 1

consensusID : consensus_5656#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 535
fasta sequence

                              [CCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCCTCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCTNTNTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTCTAGTAGCCCAACCCAGCGCGGCGCGGCGCACGATGTGCGGGATCTTCGCGTACCTCAACTACAATGTGTCGCGGGAG-GCCGGTACATNCTCGAGGTCCTCTTCAATGGCCTCCGNCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCGTCGANGGCGACGTTTCCCCCTGCGCTTCTTCTTCTTCTTCTACGGCGGTGCCGGCCTATGCCGGGGCGTCCCCGCTGGTGTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTACGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCATGGTGTGCCTGCCCCAAGGAACAGCCA]

[+] EMBL AU070511             [CCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCCTCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCTNTNTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTCTAGTAGCCCAACCCAGCGCGGCGCGGCGCACGATGTGCGGGATCTTCGCGTACCTCAACTACAATGTGTCGCGGGAG GCCGGTACATNCTCGAGGTCCTCTTCAATGGCCTCCGNCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCGTCGANGGCGACGTTTCCC                                                                                                                                                                                                                         ]
[+] EMBL AU225346             [                                                                                                                        gccgctgGAAACTTCTGGAAGCTTCTAGAAGCCCAGCCCAGCGCGGCGCGGCGCACGATGTGCGGGATCTTCGCGTACCTCAACTACAATGTGTCGCGGGAGCGCCGCTACATCCTCGAGGTCCTCTTCAATGGCCTCCGCCGCCTCGAGTACCGCGGCTACGACTCCTCCGGCATCGCCGTCGACGCCGACGTTCCCTCCTGCGCTTCTTCTTCTTCTTCTACGGCGGTGCCGGCCTATGCCGGGGCGTCCCCGCTGGTGTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTACGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCATGGTGTGCCTGCCCCAAGGAACAGCCA]




>consensus_5656#0
CCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCCTCGCCGCCGACGTAACCGC
GTCCTCTCTCTCTCTCTCTCTCTCTCTNTNTCTCTCTCTCTCTCTCTCTCTCTCTCCTCC
GAGCCCAGAAACTTCTGGAAGCTTCTAGTAGCCCAACCCAGCGCGGCGCGGCGCACGATG
TGCGGGATCTTCGCGTACCTCAACTACAATGTGTCGCGGGAGGCCGGTACATNCTCGAGG
TCCTCTTCAATGGCCTCCGNCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCG
TCGANGGCGACGTTTCCCCCTGCGCTTCTTCTTCTTCTTCTACGGCGGTGCCGGCCTATG
CCGGGGCGTCCCCGCTGGTGTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTACGATCCG
TCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTG
GAATTGCCCACACCAGGTGGGCCACGCATGGTGTGCCTGCCCCAAGGAACAGCCA

consensusID : consensus_5656#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [AAATAAGAACAAAACGCGGCCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCCTCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTTTTGTATCCCAACCCAGCGCGGCGCGGCGCACGATGTGCGGTTATTTTTCGTACCTCAACTACAATGTGTCGCGGGAGCGCCGGTACATCCTCGAGGTCCTCTTCAATGGCCTCCGCCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCGTCGACGCCGACGTTCCCTCCTGCGCTTCTACTTCTGCGGTGCCGCCGTACGCCGGGGCGCCCCCGCTGGTGTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCACGGTG]

[+] EMBL CF305997             [AAATAAGAACAAAACGCGGCCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCCTCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTTTTGTATCCCAACCCAGCGCGGCGCGGCGCACGATGTGCGGTTATTTTTCGTACCTCAACTACAATGTGTCGCGGGAGCGCCGGTACATCCTCGAGGTCCTCTTCAATGGCCTCCGCCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCGTCGACGCCGACGTTCCCTCCTGCGCTTCTACTTCTGCGGTGCCGCCGTACGCCGGGGCGCCCCCGCTGGTGTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCACGGTG]




>consensus_5656#1
AAATAAGAACAAAACGCGGCCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCC
TCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCCTCCGAGCCCAGAAA
CTTCTGGAAGCTTTTTGTATCCCAACCCAGCGCGGCGCGGCGCACGATGTGCGGTTATTT
TTCGTACCTCAACTACAATGTGTCGCGGGAGCGCCGGTACATCCTCGAGGTCCTCTTCAA
TGGCCTCCGCCGCCTCGAGTACCGCGGCTACGACTCCTCCGGTATCGCCGTCGACGCCGA
CGTTCCCTCCTGCGCTTCTACTTCTGCGGTGCCGCCGTACGCCGGGGCGCCCCCGCTGGT
GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGAGGTTGATGA
GAAGGATGTGAACCTGGACGCCGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTG
GGCCACGCACGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5656#0      -------------------CCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCC 41
consensus_5656#1      AAATAAGAACAAAACGCGGCCTTTTTCTCCTCTTCTTCCTCCGCCTCGGCCGGCGACTCC 60
                                         *****************************************

consensus_5656#0      TCGCCGCCGACGTAACCGCGTCCTCTCTCTCTCTCTCTCTCTCTCTNTNTCTCTCTCTCT 101
consensus_5656#1      TCGCCGCCGACGTAACCGCGTCCTCTCT------------------------------CT 90
                      ****************************                              **

consensus_5656#0      CTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTCTAGTAGCCCAACCCAG 161
consensus_5656#1      CTCTCTCTCTCTCTCCTCCGAGCCCAGAAACTTCTGGAAGCTTTTTGTATCCCAACCCAG 150
                      ******************************************* * *** **********

consensus_5656#0      CGCGGCGCGGCGCACGATGTGCGGGATCTTCGCGTACCTCAACTACAATGTGTCGCGGGA 221
consensus_5656#1      CGCGGCGCGGCGCACGATGTGCGGTTATTTTTCGTACCTCAACTACAATGTGTCGCGGGA 210
                      ************************    **  ****************************

consensus_5656#0      G-GCCGGTACATNCTCGAGGTCCTCTTCAATGGCCTCCGNCGCCTCGAGTACCGCGGCTA 280
consensus_5656#1      GCGCCGGTACATCCTCGAGGTCCTCTTCAATGGCCTCCGCCGCCTCGAGTACCGCGGCTA 270
                      * ********** ************************** ********************

consensus_5656#0      CGACTCCTCCGGTATCGCCGTCGANGGCGACGTTTCCCCCTGCGCTTCTTCTTCTTCTTC 340
consensus_5656#1      CGACTCCTCCGGTATCGCCGTCGACGCCGACGTTCCCTCCTGCGCTTCTACTTCT----- 325
                      ************************ * ******* ** *********** *****     

consensus_5656#0      TACGGCGGTGCCGGCCTATGCCGGGGCGTCCCCGCTGGTGTTCCGCCAGGAGGGCAAGAT 400
consensus_5656#1      ----GCGGTGCCGCCGTACGCCGGGGCGCCCCCGCTGGTGTTCCGCCAGGAGGGCAAGAT 381
                          ********* * ** ********* *******************************

consensus_5656#0      CGAGAACCTCGTACGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGC 460
consensus_5656#1      CGAGAACCTCGTGCGATCCGTCTACTCCGAGGTTGATGAGAAGGATGTGAACCTGGACGC 441
                      ************ ***********************************************

consensus_5656#0      CGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCATGGTGTGCCTGC 520
consensus_5656#1      CGCCTTCAATGTGCATGCTGGAATTGCCCACACCAGGTGGGCCACGCACGGTG------- 494
                      ************************************************ ****       

consensus_5656#0      CCCAAGGAACAGCCA 535
consensus_5656#1      ---------------