cluster # 5942

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Oryza sativa
cluster # 5942 cluster # 5942 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5942#0 length = 555 sequences # 1

consensus_5942#1 length = 541 sequences # 2

consensusID : consensus_5942#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [TGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGTCTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGGAGGATGGTGAGTTTTTTTTTTTTTTATTCTCACTCTCTTTTCTTTTCTTTTTTCTTTTTTTTTTGTTTCTGCAGACATGTGTAGCCATCAATCGATTCTTTGCTAGGTAGAGATATATGCTTATTATTATTAAGCTTTGATATGTTGCGGCCGTGAGACGATCACTGAGTCATTGTCCTCCGATCATTGGATGCTTCTCCTGTAGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAACGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACT]

[+] EMBL CF303883             [TGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGTCTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGGAGGATGGTGAGTTTTTTTTTTTTTTATTCTCACTCTCTTTTCTTTTCTTTTTTCTTTTTTTTTTGTTTCTGCAGACATGTGTAGCCATCAATCGATTCTTTGCTAGGTAGAGATATATGCTTATTATTATTAAGCTTTGATATGTTGCGGCCGTGAGACGATCACTGAGTCATTGTCCTCCGATCATTGGATGCTTCTCCTGTAGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAACGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACT]




>consensus_5942#0
TGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGTCTGTCCACTTCAGATGTGTCGATGA
AAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACT
GAAGCTCACGCAGGGGAGGATGGTGAGTTTTTTTTTTTTTTATTCTCACTCTCTTTTCTT
TTCTTTTTTCTTTTTTTTTTGTTTCTGCAGACATGTGTAGCCATCAATCGATTCTTTGCT
AGGTAGAGATATATGCTTATTATTATTAAGCTTTGATATGTTGCGGCCGTGAGACGATCA
CTGAGTCATTGTCCTCCGATCATTGGATGCTTCTCCTGTAGGTGTTCGAGATCCGGCCCA
CCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCG
ACTGCACCAACGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCA
AGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACA
CCAACGCCTCCTACT

consensusID : consensus_5942#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 541
fasta sequence

                              [GCCATGGCATGGACATCAAGGGCCCCGCGAAGGCCTCCCGCCACAACAAGGCCAAGGCGAAAGGCGTTCTCTTTCAGCCGGCTAGCGAGTTCCTCCCCATGATAGAACAGGTGCACGATTCTCTGATAGAAAGGACCAAGTGCATACCTGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGT-CTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCA-GGGAGGNNATGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAACNGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCTGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACTCCCTGCAAGAGCCAGCCGAGGTGATGGAGTTCTTG]

[+] EMBL CF309540             [GCCATGGCATGGACATCAAGGGCCCCGCGAAGGCCTCCCGCCACAACAAGGCCAAGGCGAAAGGCGTTCTCTTTCAGCCGGCTAGCGAGTTCCTCCCCATGATAGAACAGGTGCACGATTCTCTGATAGAAAGGACCAAGTGCATACCTGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGT CTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCA GGGAGGNNATGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAACNGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCTGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACTC                                  ]
[+] EMBL CF311215             [                                                                                                                                      ACCAAGTGCATACCTGGAGCCAAGGTGGAGAA AACAAGTTCTGTGTGTACTGTCCACTTGAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGGAGG  ATGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAAC GTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACTCCCTGCAAGAGCCAGCCGAGGTGATGGAGTTCTTG]




>consensus_5942#1
GCCATGGCATGGACATCAAGGGCCCCGCGAAGGCCTCCCGCCACAACAAGGCCAAGGCGA
AAGGCGTTCTCTTTCAGCCGGCTAGCGAGTTCCTCCCCATGATAGAACAGGTGCACGATT
CTCTGATAGAAAGGACCAAGTGCATACCTGGAGCCAAGGTGGAGAACAACAAGTTCTGTG
TGTCTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGA
AGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGAGGNNATGGTGTTCGAG
ATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTA
GGGTTCGCCGACTGCACCAACNGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGA
GGACGCGTTCAAGGTGCTCTGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTA
CCCCAAGGACACCAACGCCTCCTACTCCCTGCAAGAGCCAGCCGAGGTGATGGAGTTCTT
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5942#0      TGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGTCTGTCCACTTCAGATGTGTCGATGA 60
consensus_5942#1      ----------------------------------------------------------GC 2
                                                                                * 

consensus_5942#0      AAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACT 120
consensus_5942#1      CATGGCATGGACATCAAGGGCC----CCGCGAAGGCCTCCCGCCACAACAAGGCCAAGGC 58
                       * *   ****   **  ***       * ******    * * *  ** *  ****   

consensus_5942#0      GAA----GCTCACGCAGGGGAGGATGGTGAGTTTTTTTTTTTTTTATTCTCACT-CTCTT 175
consensus_5942#1      GAAAGGCGTTCTCTTTCAGCCGGCTAGCGAGTTCCTCCCCATGATAGAACAGGTGCACGA 118
                      ***    * ** *     *  ** * * *****  *     *  **       * * *  

consensus_5942#0      TTCTTTTCTTTTTTCTTTTTTTTTTGTTTCTGCAGACATGTGTAGCCATCAATCGATTCT 235
consensus_5942#1      TTCTCTGATAGAAAGGACCAAGTGCATACCTGGAGCCAAG-GTGGAGAACAACAAGTTCT 177
                      **** *  *             *   *  *** ** ** * ** *  * ***    ****

consensus_5942#0      TTGCTAGGTAGAGATATATGCTTATTATTATTAAGCTTTGATATGTTGCGGCCGTGAGA- 294
consensus_5942#1      GTGTGTCTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAG 237
                       **           *  *    * *   *   ***   **         *** *  * * 

consensus_5942#0      CGATCACTGAGTCATTGTCCTCCGATCATTGGATGCTTCTCC-------TGTAGGTGTTC 347
consensus_5942#1      TGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGAGGNNATGGTGTTC 297
                       **   * ***     *  ** *    *   ** ***    *           *******

consensus_5942#0      GAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCG 407
consensus_5942#1      GAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCG 357
                      ************************************************************

consensus_5942#0      CTAGGGTTCGCCGACTGCACCAACG-TGCTGCCGGTGTACATCGGCGACGACCGGACCGA 466
consensus_5942#1      CTAGGGTTCGCCGACTGCACCAACNGTGCTGCCGGTGTACATCGGCGACGACCGGACCGA 417
                      ************************  **********************************

consensus_5942#0      CGAGGACGCGTTCAAGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAA 526
consensus_5942#1      CGAGGACGCGTTCAAGGTGCTCTGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAA 477
                      ********************** *************************************

consensus_5942#0      GTACCCCAAGGACACCAACGCCTCCTACT------------------------------- 555
consensus_5942#1      GTACCCCAAGGACACCAACGCCTCCTACTCCCTGCAAGAGCCAGCCGAGGTGATGGAGTT 537
                      *****************************                               

consensus_5942#0      ----
consensus_5942#1      CTTG 541