cluster # 5944

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Oryza sativa
cluster # 5944 cluster # 5944 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5944#0 length = 2146 sequences # 2

consensus_5944#1 length = 680 sequences # 1

consensusID : consensus_5944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2146
fasta sequence

                              [AGCGGCGCCGGCGGCTCCGGCGGCGCTGAGACTGAGAGCGCACCACTCCGCAGCCACAGGCGGACCGGATCGACGATGCCTGCGGCCTCCGCCGCCGTCCCAGCGAGGCTGAAGCGGGAGGACTACCCACGCACCAAGCACGACTCCCTCTTCTCCCCATGGAAGGTTCTTGTCGGGCCGTCGGACTGGGAGGACCACGCCGCCGGCAAGGAAGGGATCCAGAGGTACAGGGTGCTCAACCTGCCGGAGAACTTCCCTGGCCTCTACGAGCTGGGCGTCGCGAGGGCCTCCGACGAGGGTATCAGGGCGGCTCGGCGGTGGAATGGATCCGGTGGTGGTGGCGTCGTCGTCGTGTACCTCGGGCAGGCCGACAGCGTCAGGGCGAGGCTCCAGCAGTACGGCCGGACGGGATCGCACTTGGACGCCGGGAACCCACCGCCGTCCGCCGGCGAAGCGGAGACGAATACGCGGGCGACGGGGAATGGGTTGTTCAGGGAAGTTTTCGTCAGAGGCTACTCCTTGGTGTTCCGATGTGCTCTGATGGGTAACAAACAAGAAGCTGAGAAGACTGAGGCTCGGCTGCTTAGAGTGTTTGATTACGCATGGAACAAGCTTCAGAACGGTGGTCTTCGCCGTGAAGAAATACTTATCAAGTTAGAACAAGGGGCAGTCAACAATAGATCATCTCTGCTTAGCAGAGTACGGCACTTCAAACAGGAAGTGTTCAGAGAGAAAGCAGGTATAAAGATAAGCAGAAATGGGTCTGTTGATGTCTCATCTGGCATTATGAAAAATATGCTCCCAAGAATTCGAACATTTGTTGGCTTCAGACCTCAGCTAGTTAACTCTGGTGACAATGTTGACAAGGAAATTGGCATTCGCTGG-AAAATACATCTGAAGGTAACAGTTATGGCAAACAAGCACGTCGAAGTTCTGAAGGATACAAAGTCAAAAGAGTCAATGTTGTAAAACGAAGAACTATGCCAGAACAAGATTCTAACGATGTTTGTGGAGTGATGCTGGAAGATGGCTCCTCTTGTCTTGACCATCCAGTACAAGGAAGGAAGAGGTGTGAATTACACAAAGGTAGAAGACTAGGAAGAATCACAGTCAATCCTAAAGGCTCCTCTTGTAGCTATTCTTGCCAAGTTGAGATTCCAGTTGTTGAATCCATATCTCCACTAACTGAAAATGAAAGCGAGTCAGATCAAGCACAGCAAACCAGTGAACTCCTCTCCAAATTTTTGCCAGCAACAGTGAAAAAATCATCAAGACCATGGTATAGCTTTGAAGCGAAAGAAATAAAAACTGGAGAAGCTCCTATAGAAGATGGAAAACAGGAAA-CCTCTGAGGTCATTGATATCTGTGAAGCC-AAAAAGAGTGACAACTCTG-CCTGCACCAACAAAGTAATTTCAGGAAGTAAAAAATGTCAGCTGCATAATGGTTGC-AAAGCAGAAGAG-TTTGTTTCATCTCGAGTCA-TTGA-TTTGCTCCAGAAT-GAAGAAAA-GGTCAAAAGCATGACAGTTGACAAGCTCAGTGGGGAGGAGATTTCTCATGGTAAATATCAGTCCCAAGAGAATCAGCCTTCCGGAAGAATGTGGTTTGAGCTGATCAAATTGCAGAATCCTACCAGCACACTGTCATCCAAAGGCCAGGGACGTCAGAAAAGAGTGACAGGCAATGTCGCAGCTATCTGTGAAGCGTTGACGGACAACAGATGCCGTGAAACAATACCAATGGCAGGAAGAGAAAGATGCGATGCGCATGAAGGAATAAAGGTCACCGATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATTGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGCATAAAGGCCAAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCAAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCAAAATAGACAGTCAAACAAACCATGTAACTTGATACAACTTTTTTTAGGGACTCAACCT]

[+] EMBL AK102792             [AGCGGCGCCGGCGGCTCCGGCGGCGCTGAGACTGAGAGCGCACCACTCCGCAGCCACAGGCGGACCGGATCGACGATGCCTGCGGCCTCCGCCGCCGTCCCAGCGAGGCTGAAGCGGGAGGACTACCCACGCACCAAGCACGACTCCCTCTTCTCCCCATGGAAGGTTCTTGTCGGGCCGTCGGACTGGGAGGACCACGCCGCCGGCAAGGAAGGGATCCAGAGGTACAGGGTGCTCAACCTGCCGGAGAACTTCCCTGGCCTCTACGAGCTGGGCGTCGCGAGGGCCTCCGACGAGGGTATCAGGGCGGCTCGGCGGTGGAATGGATCCGGTGGTGGTGGCGTCGTCGTCGTGTACCTCGGGCAGGCCGACAGCGTCAGGGCGAGGCTCCAGCAGTACGGCCGGACGGGATCGCACTTGGACGCCGGGAACCCACCGCCGTCCGCCGGCGAAGCGGAGACGAATACGCGGGCGACGGGGAATGGGTTGTTCAGGGAAGTTTTCGTCAGAGGCTACTCCTTGGTGTTCCGATGTGCTCTGATGGGTAACAAACAAGAAGCTGAGAAGACTGAGGCTCGGCTGCTTAGAGTGTTTGATTACGCATGGAACAAGCTTCAGAACGGTGGTCTTCGCCGTGAAGAAATACTTATCAAGTTAGAACAAGGGGCAGTCAACAATAGATCATCTCTGCTTAGCAGAGTACGGCACTTCAAACAGGAAGTGTTCAGAGAGAAAGCAGGTATAAAGATAAGCAGAAATGGGTCTGTTGATGTCTCATCTGGCATTATGAAAAATATGCTCCCAAGAATTCGAACATTTGTTGGCTTCAGACCTCAGCTAGTTAACTCTGGTGACAATGTTGACAAGGAAATTGGCATTCGCTGG AAAATACATCTGAAGGTAACAGTTATGGCAAACAAGCACGTCGAAGTTCTGAAGGATACAAAGTCAAAAGAGTCAATGTTGTAAAACGAAGAACTATGCCAGAACAAGATTCTAACGATGTTTGTGGAGTGATGCTGGAAGATGGCTCCTCTTGTCTTGACCATCCAGTACAAGGAAGGAAGAGGTGTGAATTACACAAAGGTAGAAGACTAGGAAGAATCACAGTCAATCCTAAAGGCTCCTCTTGTAGCTATTCTTGCCAAGTTGAGATTCCAGTTGTTGAATCCATATCTCCACTAACTGAAAATGAAAGCGAGTCAGATCAAGCACAGCAAACCAGTGAACTCCTCTCCAAATTTTTGCCAGCAACAGTGAAAAAATCATCAAGACCATGGTATAGCTTTGAAGCGAAAGAAATAAAAACTGGAGAAGCTCCTATAGAAGATGGAAAACAGGAAA CCTCTGAGGTCATTGATATCTGTGAAGCC AAAAAGAGTGACAACTCTG CCTGCACCAACAAAGTAATTTCAGGAAGTAAAAAATGTCAGCTGCATAATGGTTGC AAAGCAGAAGAG TTTGTTTCATCTCGAGTCA TTGA TTTGCTCCAGAAT GAAGAAAA GGTCAAAAGCATGACAGTTGACAAGCTCAGTGGGGAGGAGATTTCTCATGGTAAATATCAGTCCCAAGAGAATCAGCCTTCCGGAAGAATGTGGTTTGAGCTGATCAAATTGCAGAATCCTACCAGCACACTGTCATCCAAAGGCCAGGGACGTCAGAAAAGAGTGACAGGCAATGTCGCAGCTATCTGTGAAGCGTTGACGGACAACAGATGCCGTGAAACAATACCAATGGCAGGAAGAGAAAGATGCGATGCGCATGAAGGAATAAAGGTCACCGATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATTGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGCATAAAGGCCAAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCAAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCAAAATAGACAGTCAAACAAACCATGTAACTTGATACAACTTTTTTTAGGGACTCAACCT]
[+] EMBL CA764561             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       aaggggGACCTCAGCTAGTTAACTCTGGTGACAATGTTGACAAGGAAATTGGCATTCGCTGGAAAAATACATCTGAAGGTAACAGTTATGGCAAACAAGCACGTCGAAGCTCTGAAGGATACAAAGTCAAAAGAGTCAATGTTATAAAACGAAGAACTATGCCAGAACAAGATTCTAACGATGTTTGTGGAGTGATGCTGGAAGATGGCTCCTCTTGTCTTGACCATCCAGTACAGGGAAGGAAGAGGTGTGAATTACACAAAGGTAGAAGACTAGGAAGAATCACAGTCAATCCTAAAGGCTCCTCTTGTAGCTATTCTTGCCAAGTTGAGATTCCAGTTGTTGAATCCATATCTCCACTAACTGAAAATGAAAGCGAGTCAGATCAAGCACAGCAAACCAGNGAACTCCTCTCCAAATTTTTGCCAGAAACAGNGAAAAAATCATCAAGACCATGGTATAGCTTTGAAGCGANAGAAATAAAAACTGGAGAAGCTTCTATAGAAGATGGAAAACAGGAAACCCTCTGAGGTCATTGATATCTGNGAAGCCAAAAAAGAGTGACAACTCTGCCCTGCACCAACAAAGTAATTTCAGGAAGNNAAAAATGGCAGCTGCTAAATGGNTGCNAAACNNGAAGAGTTTTGTTTCATCTCNAGCCANTGGATTTTGCTCCCGAATGGAAGAAAAGGGTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]




>consensus_5944#0
AGCGGCGCCGGCGGCTCCGGCGGCGCTGAGACTGAGAGCGCACCACTCCGCAGCCACAGG
CGGACCGGATCGACGATGCCTGCGGCCTCCGCCGCCGTCCCAGCGAGGCTGAAGCGGGAG
GACTACCCACGCACCAAGCACGACTCCCTCTTCTCCCCATGGAAGGTTCTTGTCGGGCCG
TCGGACTGGGAGGACCACGCCGCCGGCAAGGAAGGGATCCAGAGGTACAGGGTGCTCAAC
CTGCCGGAGAACTTCCCTGGCCTCTACGAGCTGGGCGTCGCGAGGGCCTCCGACGAGGGT
ATCAGGGCGGCTCGGCGGTGGAATGGATCCGGTGGTGGTGGCGTCGTCGTCGTGTACCTC
GGGCAGGCCGACAGCGTCAGGGCGAGGCTCCAGCAGTACGGCCGGACGGGATCGCACTTG
GACGCCGGGAACCCACCGCCGTCCGCCGGCGAAGCGGAGACGAATACGCGGGCGACGGGG
AATGGGTTGTTCAGGGAAGTTTTCGTCAGAGGCTACTCCTTGGTGTTCCGATGTGCTCTG
ATGGGTAACAAACAAGAAGCTGAGAAGACTGAGGCTCGGCTGCTTAGAGTGTTTGATTAC
GCATGGAACAAGCTTCAGAACGGTGGTCTTCGCCGTGAAGAAATACTTATCAAGTTAGAA
CAAGGGGCAGTCAACAATAGATCATCTCTGCTTAGCAGAGTACGGCACTTCAAACAGGAA
GTGTTCAGAGAGAAAGCAGGTATAAAGATAAGCAGAAATGGGTCTGTTGATGTCTCATCT
GGCATTATGAAAAATATGCTCCCAAGAATTCGAACATTTGTTGGCTTCAGACCTCAGCTA
GTTAACTCTGGTGACAATGTTGACAAGGAAATTGGCATTCGCTGGAAAATACATCTGAAG
GTAACAGTTATGGCAAACAAGCACGTCGAAGTTCTGAAGGATACAAAGTCAAAAGAGTCA
ATGTTGTAAAACGAAGAACTATGCCAGAACAAGATTCTAACGATGTTTGTGGAGTGATGC
TGGAAGATGGCTCCTCTTGTCTTGACCATCCAGTACAAGGAAGGAAGAGGTGTGAATTAC
ACAAAGGTAGAAGACTAGGAAGAATCACAGTCAATCCTAAAGGCTCCTCTTGTAGCTATT
CTTGCCAAGTTGAGATTCCAGTTGTTGAATCCATATCTCCACTAACTGAAAATGAAAGCG
AGTCAGATCAAGCACAGCAAACCAGTGAACTCCTCTCCAAATTTTTGCCAGCAACAGTGA
AAAAATCATCAAGACCATGGTATAGCTTTGAAGCGAAAGAAATAAAAACTGGAGAAGCTC
CTATAGAAGATGGAAAACAGGAAACCTCTGAGGTCATTGATATCTGTGAAGCCAAAAAGA
GTGACAACTCTGCCTGCACCAACAAAGTAATTTCAGGAAGTAAAAAATGTCAGCTGCATA
ATGGTTGCAAAGCAGAAGAGTTTGTTTCATCTCGAGTCATTGATTTGCTCCAGAATGAAG
AAAAGGTCAAAAGCATGACAGTTGACAAGCTCAGTGGGGAGGAGATTTCTCATGGTAAAT
ATCAGTCCCAAGAGAATCAGCCTTCCGGAAGAATGTGGTTTGAGCTGATCAAATTGCAGA
ATCCTACCAGCACACTGTCATCCAAAGGCCAGGGACGTCAGAAAAGAGTGACAGGCAATG
TCGCAGCTATCTGTGAAGCGTTGACGGACAACAGATGCCGTGAAACAATACCAATGGCAG
GAAGAGAAAGATGCGATGCGCATGAAGGAATAAAGGTCACCGATGCTTCCTCTGTACCGT
TTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATTGTTCTCCTT
GTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGCATAAAGGCCAAAGAGCAT
GTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAATTGCTTACGTT
CATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCAAAGAAAGCTGT
TTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCAAAATAGACAGTC
AAACAAACCATGTAACTTGATACAACTTTTTTTAGGGACTCAACCT

consensusID : consensus_5944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [CTGATCAACTTGCAGAATCCTACCAGCACCTGGTCATCCACAAGGCCACGGGAACTGTCTNAANGTGGTNACAGNCAATTTGTGCACAGNATAGTTGTGAANGCTTTGTGCGGAACAAACCAANGTNCCCGTGTGACCAATCCCAATGGCCAGGAAGAGAAAAATCCAATGCCCCATGAAGGAATAAAGNTCACCGATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATGGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGCATAAAGGCCNAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCCAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCCAAATAGACAGTCAAACAAACCACTGTAACTTGATACAACTTTTTTTAGGGACTCAACCTCTATTACCTGAACATCGCGCATTTGCCATCTAATGCACCATAGGGCATTGGTTATAAACTTGTGCTTTCAAAGTGCAAAGAGATACACTCTTCTTGGTTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BM419305             [CTGATCAACTTGCAGAATCCTACCAGCACCTGGTCATCCACAAGGCCACGGGAACTGTCTNAANGTGGTNACAGNCAATTTGTGCACAGNATAGTTGTGAANGCTTTGTGCGGAACAAACCAANGTNCCCGTGTGACCAATCCCAATGGCCAGGAAGAGAAAAATCCAATGCCCCATGAAGGAATAAAGNTCACCGATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAGCTTCGGATGGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGCATAAAGGCCNAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGATGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAGTAAACCCAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGTAAACCCAAATAGACAGTCAAACAAACCACTGTAACTTGATACAACTTTTTTTAGGGACTCAACCTCTATTACCTGAACATCGCGCATTTGCCATCTAATGCACCATAGGGCATTGGTTATAAACTTGTGCTTTCAAAGTGCAAAGAGATACACTCTTCTTGGTTAAAAAAAAAAAAAAAAAAAA]




>consensus_5944#1
CTGATCAACTTGCAGAATCCTACCAGCACCTGGTCATCCACAAGGCCACGGGAACTGTCT
NAANGTGGTNACAGNCAATTTGTGCACAGNATAGTTGTGAANGCTTTGTGCGGAACAAAC
CAANGTNCCCGTGTGACCAATCCCAATGGCCAGGAAGAGAAAAATCCAATGCCCCATGAA
GGAATAAAGNTCACCGATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCA
ATCTGTGGTGCTCGAGCTTCGGATGGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGA
AAGAGATGCGCGATGCATAAAGGCCNAAGAGCATGTCGGACCCCCTCAATCGACTGAGCA
GACATGATATGAGTGATGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCAT
TTTCAGTAAGGAAAAGTAAACCCAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTT
ATTCGTTGCTGCTTGTAAACCCAAATAGACAGTCAAACAAACCACTGTAACTTGATACAA
CTTTTTTTAGGGACTCAACCTCTATTACCTGAACATCGCGCATTTGCCATCTAATGCACC
ATAGGGCATTGGTTATAAACTTGTGCTTTCAAAGTGCAAAGAGATACACTCTTCTTGGTT
AAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5944#0      AGCGGCGCCGGCGGCTCCGGCGGCGCTGAGACTGAGAGCGCACCACTCCGCAGCCACAGG 60
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      CGGACCGGATCGACGATGCCTGCGGCCTCCGCCGCCGTCCCAGCGAGGCTGAAGCGGGAG 120
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      GACTACCCACGCACCAAGCACGACTCCCTCTTCTCCCCATGGAAGGTTCTTGTCGGGCCG 180
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      TCGGACTGGGAGGACCACGCCGCCGGCAAGGAAGGGATCCAGAGGTACAGGGTGCTCAAC 240
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      CTGCCGGAGAACTTCCCTGGCCTCTACGAGCTGGGCGTCGCGAGGGCCTCCGACGAGGGT 300
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      ATCAGGGCGGCTCGGCGGTGGAATGGATCCGGTGGTGGTGGCGTCGTCGTCGTGTACCTC 360
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      GGGCAGGCCGACAGCGTCAGGGCGAGGCTCCAGCAGTACGGCCGGACGGGATCGCACTTG 420
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      GACGCCGGGAACCCACCGCCGTCCGCCGGCGAAGCGGAGACGAATACGCGGGCGACGGGG 480
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      AATGGGTTGTTCAGGGAAGTTTTCGTCAGAGGCTACTCCTTGGTGTTCCGATGTGCTCTG 540
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      ATGGGTAACAAACAAGAAGCTGAGAAGACTGAGGCTCGGCTGCTTAGAGTGTTTGATTAC 600
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      GCATGGAACAAGCTTCAGAACGGTGGTCTTCGCCGTGAAGAAATACTTATCAAGTTAGAA 660
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      CAAGGGGCAGTCAACAATAGATCATCTCTGCTTAGCAGAGTACGGCACTTCAAACAGGAA 720
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      GTGTTCAGAGAGAAAGCAGGTATAAAGATAAGCAGAAATGGGTCTGTTGATGTCTCATCT 780
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      GGCATTATGAAAAATATGCTCCCAAGAATTCGAACATTTGTTGGCTTCAGACCTCAGCTA 840
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      GTTAACTCTGGTGACAATGTTGACAAGGAAATTGGCATTCGCTGGAAAATACATCTGAAG 900
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      GTAACAGTTATGGCAAACAAGCACGTCGAAGTTCTGAAGGATACAAAGTCAAAAGAGTCA 960
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      ATGTTGTAAAACGAAGAACTATGCCAGAACAAGATTCTAACGATGTTTGTGGAGTGATGC 1020
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      TGGAAGATGGCTCCTCTTGTCTTGACCATCCAGTACAAGGAAGGAAGAGGTGTGAATTAC 1080
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      ACAAAGGTAGAAGACTAGGAAGAATCACAGTCAATCCTAAAGGCTCCTCTTGTAGCTATT 1140
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      CTTGCCAAGTTGAGATTCCAGTTGTTGAATCCATATCTCCACTAACTGAAAATGAAAGCG 1200
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      AGTCAGATCAAGCACAGCAAACCAGTGAACTCCTCTCCAAATTTTTGCCAGCAACAGTGA 1260
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      AAAAATCATCAAGACCATGGTATAGCTTTGAAGCGAAAGAAATAAAAACTGGAGAAGCTC 1320
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      CTATAGAAGATGGAAAACAGGAAACCTCTGAGGTCATTGATATCTGTGAAGCCAAAAAGA 1380
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      GTGACAACTCTGCCTGCACCAACAAAGTAATTTCAGGAAGTAAAAAATGTCAGCTGCATA 1440
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      ATGGTTGCAAAGCAGAAGAGTTTGTTTCATCTCGAGTCATTGATTTGCTCCAGAATGAAG 1500
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      AAAAGGTCAAAAGCATGACAGTTGACAAGCTCAGTGGGGAGGAGATTTCTCATGGTAAAT 1560
consensus_5944#1      ------------------------------------------------------------
                                                                                  

consensus_5944#0      ATCAGTCCCAAGAGAATCAGCCTTCCGGAAGAATGTGGTTTGAGCTGATCAAATTGCAGA 1620
consensus_5944#1      --------------------------------------------CTGATCAACTTGCAGA 16
                                                                  ******** *******

consensus_5944#0      ATCCTACCAGCACACTGTCATCCA-AAGGCCAGGGA---CGTCAGAAAAGAGTGACAGGC 1676
consensus_5944#1      ATCCTACCAGCACCTGGTCATCCACAAGGCCACGGGAACTGTCTNAANGTGGTNACAGNC 76
                      *************   ******** ******* **     ***  **    ** **** *

consensus_5944#0      AATGT---CGCAGC-TATCTGTGAAGCGTT-------GACGGACAACAGATGCCGTGAAA 1725
consensus_5944#1      AATTTGTGCACAGNATAGTTGTGAANGCTTTGTGCGGAACAAACCAANGTNCCCGTGTGA 136
                      *** *   * ***  **  ******   **        **  ** *  *   *****  *

consensus_5944#0      C-AATACCAATGGC-AGGAAGAGAAAGATGCGATGCGC-ATGAAGGAATAAAGGTCACCG 1782
consensus_5944#1      CCAATCCCAATGGCCAGGAAGAGAAAAATCCAATGCCCCATGAAGGAATAAAGNTCACCG 196
                      * *** ******** *********** ** * **** * ************** ******

consensus_5944#0      ATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAG 1842
consensus_5944#1      ATGCTTCCTCTGTACCGTTTTCCGGAAGCTCAGGATGGCCATCAATCTGTGGTGCTCGAG 256
                      ************************************************************

consensus_5944#0      CTTCGGATTGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGC 1902
consensus_5944#1      CTTCGGATGGTTCTCCTTGTAAGAATCAGCCAATTGCAGGGAGAAAGAGATGCGCGATGC 316
                      ******** ***************************************************

consensus_5944#0      ATAAAGGCCAAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGA 1962
consensus_5944#1      ATAAAGGCCNAAGAGCATGTCGGACCCCCTCAATCGACTGAGCAGACATGATATGAGTGA 376
                      ********* **************************************************

consensus_5944#0      TGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAG 2022
consensus_5944#1      TGCTCAATTGCTTACGTTCATTCAGTCATTTGTTGTAATAGCATTTTCAGTAAGGAAAAG 436
                      ************************************************************

consensus_5944#0      TAAACCAAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGT 2082
consensus_5944#1      TAAACCCAAGAAAGCTGTTTTCTTGCCCCGAGTTTTGATTGGTTATTCGTTGCTGCTTGT 496
                      ****** *****************************************************

consensus_5944#0      AAACCAAAATAGACAGTCAAACAAACCA-TGTAACTTGATACAACTTTTTTTAGGGACTC 2141
consensus_5944#1      AAACCCAAATAGACAGTCAAACAAACCACTGTAACTTGATACAACTTTTTTTAGGGACTC 556
                      ***** ********************** *******************************

consensus_5944#0      AACCT------------------------------------------------------- 2146
consensus_5944#1      AACCTCTATTACCTGAACATCGCGCATTTGCCATCTAATGCACCATAGGGCATTGGTTAT 616
                      *****                                                       

consensus_5944#0      ------------------------------------------------------------
consensus_5944#1      AAACTTGTGCTTTCAAAGTGCAAAGAGATACACTCTTCTTGGTTAAAAAAAAAAAAAAAA 676
                                                                                  

consensus_5944#0      ----
consensus_5944#1      AAAA 680